data_3UTY # _model_server_result.job_id -xg7dbeRpO1UBNI-uYbyPQ _model_server_result.datetime_utc '2024-10-31 07:35:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3uty # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 3UTY # _exptl.entry_id 3UTY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 170.335 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.55 _cell.angle_gamma 90 _cell.entry_id 3UTY _cell.length_a 45.781 _cell.length_b 116.463 _cell.length_c 57.083 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UTY _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,F 1 1 B,E,G 2 1 A,B,C,D,E,F,G 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 216 A LYS 216 1_555 C C15 RET . A RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 B NZ LYS 216 B LYS 216 1_555 E C15 RET . B RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? # _chem_comp.formula 'C12 H26' _chem_comp.formula_weight 170.335 _chem_comp.id D12 _chem_comp.mon_nstd_flag . _chem_comp.name DODECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 D12 sing 70 n n C1 H11 D12 sing 71 n n C1 H12 D12 sing 72 n n C1 H13 D12 sing 73 n n C2 C3 D12 sing 74 n n C2 H21 D12 sing 75 n n C2 H22 D12 sing 76 n n C3 C4 D12 sing 77 n n C3 H31 D12 sing 78 n n C3 H32 D12 sing 79 n n C4 C5 D12 sing 80 n n C4 H41 D12 sing 81 n n C4 H42 D12 sing 82 n n C5 C6 D12 sing 83 n n C5 H51 D12 sing 84 n n C5 H52 D12 sing 85 n n C6 C7 D12 sing 86 n n C6 H61 D12 sing 87 n n C6 H62 D12 sing 88 n n C7 C8 D12 sing 89 n n C7 H71 D12 sing 90 n n C7 H72 D12 sing 91 n n C8 C9 D12 sing 92 n n C8 H81 D12 sing 93 n n C8 H82 D12 sing 94 n n C9 C10 D12 sing 95 n n C9 H91 D12 sing 96 n n C9 H92 D12 sing 97 n n C10 C11 D12 sing 98 n n C10 H101 D12 sing 99 n n C10 H102 D12 sing 100 n n C11 C12 D12 sing 101 n n C11 H111 D12 sing 102 n n C11 H112 D12 sing 103 n n C12 H121 D12 sing 104 n n C12 H122 D12 sing 105 n n C12 H123 D12 sing 106 n n # _atom_sites.entry_id 3UTY _atom_sites.fract_transf_matrix[1][1] 0.021843 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00907 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008586 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018969 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 RET A 1 301 301 RET RET . D 3 D12 A 1 501 501 D12 D12 . E 2 RET B 1 301 301 RET RET . F 4 HOH A 1 402 402 HOH HOH . F 4 HOH A 2 403 403 HOH HOH . F 4 HOH A 3 405 405 HOH HOH . F 4 HOH A 4 406 406 HOH HOH . F 4 HOH A 5 407 407 HOH HOH . G 4 HOH B 1 401 401 HOH HOH . G 4 HOH B 2 404 404 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 D12 . . . D 3 15.439 18.032 -34.176 1 45.84 ? C1 D12 501 A 1 HETATM 2 C C2 D12 . . . D 3 15.436 17.397 -32.793 1 45.95 ? C2 D12 501 A 1 HETATM 3 C C3 D12 . . . D 3 15.657 15.891 -32.874 1 45.94 ? C3 D12 501 A 1 HETATM 4 C C4 D12 . . . D 3 15.674 15.326 -31.465 1 45.55 ? C4 D12 501 A 1 HETATM 5 C C5 D12 . . . D 3 15.791 13.814 -31.45 1 46.11 ? C5 D12 501 A 1 HETATM 6 C C6 D12 . . . D 3 15.822 13.366 -29.994 1 46.09 ? C6 D12 501 A 1 HETATM 7 C C7 D12 . . . D 3 15.811 11.862 -29.965 1 47.23 ? C7 D12 501 A 1 HETATM 8 C C8 D12 . . . D 3 15.909 11.286 -28.554 1 47.77 ? C8 D12 501 A 1 HETATM 9 C C9 D12 . . . D 3 15.793 9.79 -28.792 1 48.35 ? C9 D12 501 A 1 HETATM 10 C C10 D12 . . . D 3 15.937 8.9 -27.573 1 47.93 ? C10 D12 501 A 1 HETATM 11 C C11 D12 . . . D 3 15.737 7.456 -28.054 1 47.77 ? C11 D12 501 A 1 HETATM 12 C C12 D12 . . . D 3 15.931 6.478 -26.917 1 46.59 ? C12 D12 501 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 12 #