data_3UUS # _model_server_result.job_id h5aETblu5xCsUrU_mJmEkg _model_server_result.datetime_utc '2024-11-29 13:22:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3uus # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":900}' # _entry.id 3UUS # _exptl.entry_id 3UUS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 491.182 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2'-DEOXYADENOSINE 5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 119.91 _cell.angle_gamma 90 _cell.entry_id 3UUS _cell.length_a 287.358 _cell.length_b 153.457 _cell.length_c 169.416 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UUS _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 225 A CYS 225 1_555 A SG CYS 462 A CYS 462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? disulf ? disulf2 B SG CYS 225 B CYS 225 1_555 B SG CYS 462 B CYS 462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.82 ? disulf ? disulf3 C SG CYS 225 C CYS 225 1_555 C SG CYS 462 C CYS 462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf4 D SG CYS 225 D CYS 225 1_555 D SG CYS 462 D CYS 462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc1 E OD2 ASP 84 E ASP 84 1_555 Q FE FE . E FE 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc2 E OD1 ASP 84 E ASP 84 1_555 Q FE FE . E FE 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc3 E OE1 GLU 115 E GLU 115 1_555 Q FE FE . E FE 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.747 ? metalc ? metalc4 E OE2 GLU 115 E GLU 115 1_555 R FE FE . E FE 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc5 E ND1 HIS 118 E HIS 118 1_555 Q FE FE . E FE 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc6 E OE1 GLU 204 E GLU 204 1_555 R FE FE . E FE 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc7 E OE1 GLU 238 E GLU 238 1_555 R FE FE . E FE 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? metalc ? metalc8 E OE2 GLU 238 E GLU 238 1_555 R FE FE . E FE 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? metalc ? metalc9 E ND1 HIS 241 E HIS 241 1_555 R FE FE . E FE 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc10 F OD2 ASP 84 F ASP 84 1_555 S FE FE . F FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc11 F OD1 ASP 84 F ASP 84 1_555 S FE FE . F FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc12 F OE1 GLU 115 F GLU 115 1_555 S FE FE . F FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.719 ? metalc ? metalc13 F OE2 GLU 115 F GLU 115 1_555 T FE FE . F FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc14 F ND1 HIS 118 F HIS 118 1_555 S FE FE . F FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc15 F OE1 GLU 204 F GLU 204 1_555 T FE FE . F FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc16 F OE1 GLU 238 F GLU 238 1_555 T FE FE . F FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.78 ? metalc ? metalc17 F OE2 GLU 238 F GLU 238 1_555 T FE FE . F FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.788 ? metalc ? metalc18 F ND1 HIS 241 F HIS 241 1_555 T FE FE . F FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc19 G OD1 ASP 84 G ASP 84 1_555 U FE FE . G FE 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc20 G OD2 ASP 84 G ASP 84 1_555 U FE FE . G FE 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc21 G OE1 GLU 115 G GLU 115 1_555 U FE FE . G FE 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.735 ? metalc ? metalc22 G OE2 GLU 115 G GLU 115 1_555 V FE FE . G FE 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc23 G ND1 HIS 118 G HIS 118 1_555 U FE FE . G FE 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc24 G OE1 GLU 204 G GLU 204 1_555 V FE FE . G FE 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc25 G OE1 GLU 238 G GLU 238 1_555 V FE FE . G FE 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? metalc ? metalc26 G OE2 GLU 238 G GLU 238 1_555 V FE FE . G FE 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.729 ? metalc ? metalc27 G ND1 HIS 241 G HIS 241 1_555 V FE FE . G FE 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc28 H OD2 ASP 84 H ASP 84 1_555 W FE FE . H FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc29 H OD1 ASP 84 H ASP 84 1_555 W FE FE . H FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc30 H OE1 GLU 115 H GLU 115 1_555 W FE FE . H FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.715 ? metalc ? metalc31 H OE2 GLU 115 H GLU 115 1_555 X FE FE . H FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc32 H ND1 HIS 118 H HIS 118 1_555 W FE FE . H FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc33 H OE1 GLU 204 H GLU 204 1_555 X FE FE . H FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc34 H OE1 GLU 238 H GLU 238 1_555 X FE FE . H FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.772 ? metalc ? metalc35 H ND1 HIS 241 H HIS 241 1_555 X FE FE . H FE 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? # _chem_comp.formula 'C10 H16 N5 O12 P3' _chem_comp.formula_weight 491.182 _chem_comp.id DTP _chem_comp.mon_nstd_flag . _chem_comp.name "2'-DEOXYADENOSINE 5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G DTP doub 83 n n PG O2G DTP sing 84 n n PG O3G DTP sing 85 n n PG O3B DTP sing 86 n n O2G HOG2 DTP sing 87 n n O3G HOG3 DTP sing 88 n n PB O1B DTP doub 89 n n PB O2B DTP sing 90 n n PB O3B DTP sing 91 n n PB O3A DTP sing 92 n n O2B HOB2 DTP sing 93 n n PA O1A DTP doub 94 n n PA O2A DTP sing 95 n n PA O3A DTP sing 96 n n PA O5' DTP sing 97 n n O2A HOA2 DTP sing 98 n n O5' C5' DTP sing 99 n n C5' C4' DTP sing 100 n n C5' "H5'1" DTP sing 101 n n C5' "H5'2" DTP sing 102 n n C4' O4' DTP sing 103 n n C4' C3' DTP sing 104 n n C4' H4' DTP sing 105 n n O4' C1' DTP sing 106 n n C3' O3' DTP sing 107 n n C3' C2' DTP sing 108 n n C3' H3' DTP sing 109 n n O3' HO3' DTP sing 110 n n C2' C1' DTP sing 111 n n C2' "H2'1" DTP sing 112 n n C2' "H2'2" DTP sing 113 n n C1' N9 DTP sing 114 n n C1' H1' DTP sing 115 n n N9 C8 DTP sing 116 n y N9 C4 DTP sing 117 n y C8 N7 DTP doub 118 n y C8 H8 DTP sing 119 n n N7 C5 DTP sing 120 n y C5 C6 DTP sing 121 n y C5 C4 DTP doub 122 n y C6 N6 DTP sing 123 n n C6 N1 DTP doub 124 n y N6 HN61 DTP sing 125 n n N6 HN62 DTP sing 126 n n N1 C2 DTP sing 127 n y C2 N3 DTP doub 128 n y C2 H2 DTP sing 129 n n N3 C4 DTP sing 130 n y # _atom_sites.entry_id 3UUS _atom_sites.fract_transf_matrix[1][1] 0.00348 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002002 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006516 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00681 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 DTP A 1 800 800 DTP DTP . J 3 DTP A 1 900 900 DTP DTP . K 3 DTP B 1 800 800 DTP DTP . L 3 DTP B 1 900 900 DTP DTP . M 3 DTP C 1 800 800 DTP DTP . N 3 DTP C 1 900 900 DTP DTP . O 3 DTP D 1 800 800 DTP DTP . P 3 DTP D 1 900 900 DTP DTP . Q 4 FE E 1 1003 1003 FE FE . R 4 FE E 1 1004 1004 FE FE . S 4 FE F 1 1001 1001 FE FE . T 4 FE F 1 1002 1002 FE FE . U 4 FE G 1 1003 1003 FE FE . V 4 FE G 1 1004 1004 FE FE . W 4 FE H 1 1001 1001 FE FE . X 4 FE H 1 1002 1002 FE FE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG DTP . . . N 3 67.712 34.935 -13.311 1 284 ? PG DTP 900 C 1 HETATM 2 O O1G DTP . . . N 3 66.56 34.845 -14.277 1 284 ? O1G DTP 900 C 1 HETATM 3 O O2G DTP . . . N 3 67.789 33.634 -12.499 1 284 ? O2G DTP 900 C 1 HETATM 4 O O3G DTP . . . N 3 69.004 35.12 -14.074 1 284 ? O3G DTP 900 C 1 HETATM 5 P PB DTP . . . N 3 66.236 37.048 -12.422 1 284 ? PB DTP 900 C 1 HETATM 6 O O1B DTP . . . N 3 66.3 37.944 -13.64 1 284 ? O1B DTP 900 C 1 HETATM 7 O O2B DTP . . . N 3 66.168 37.92 -11.19 1 284 ? O2B DTP 900 C 1 HETATM 8 O O3B DTP . . . N 3 67.515 36.14 -12.343 1 284 ? O3B DTP 900 C 1 HETATM 9 P PA DTP . . . N 3 63.799 36.367 -13.508 1 284 ? PA DTP 900 C 1 HETATM 10 O O1A DTP . . . N 3 64.388 36.444 -14.863 1 284 ? O1A DTP 900 C 1 HETATM 11 O O2A DTP . . . N 3 63.112 37.633 -13.195 1 284 ? O2A DTP 900 C 1 HETATM 12 O O3A DTP . . . N 3 64.939 36.123 -12.462 1 284 ? O3A DTP 900 C 1 HETATM 13 O O5' DTP . . . N 3 62.77 35.156 -13.454 1 284 ? O5' DTP 900 C 1 HETATM 14 C C5' DTP . . . N 3 62.602 34.46 -12.324 1 284 ? C5' DTP 900 C 1 HETATM 15 C C4' DTP . . . N 3 61.965 33.191 -12.42 1 284 ? C4' DTP 900 C 1 HETATM 16 O O4' DTP . . . N 3 62.297 32.394 -11.256 1 284 ? O4' DTP 900 C 1 HETATM 17 C C3' DTP . . . N 3 60.486 33.248 -12.412 1 284 ? C3' DTP 900 C 1 HETATM 18 O O3' DTP . . . N 3 60.016 32.077 -12.884 1 284 ? O3' DTP 900 C 1 HETATM 19 C C2' DTP . . . N 3 60.191 33.343 -10.99 1 284 ? C2' DTP 900 C 1 HETATM 20 C C1' DTP . . . N 3 61.248 32.533 -10.336 1 284 ? C1' DTP 900 C 1 HETATM 21 N N9 DTP . . . N 3 61.648 33.1 -9.034 1 284 ? N9 DTP 900 C 1 HETATM 22 C C8 DTP . . . N 3 62.563 34.066 -8.818 1 284 ? C8 DTP 900 C 1 HETATM 23 N N7 DTP . . . N 3 62.647 34.31 -7.499 1 284 ? N7 DTP 900 C 1 HETATM 24 C C5 DTP . . . N 3 61.775 33.49 -6.863 1 284 ? C5 DTP 900 C 1 HETATM 25 C C6 DTP . . . N 3 61.432 33.296 -5.527 1 284 ? C6 DTP 900 C 1 HETATM 26 N N6 DTP . . . N 3 62.081 34.089 -4.478 1 284 ? N6 DTP 900 C 1 HETATM 27 N N1 DTP . . . N 3 60.498 32.377 -5.197 1 284 ? N1 DTP 900 C 1 HETATM 28 C C2 DTP . . . N 3 59.921 31.668 -6.166 1 284 ? C2 DTP 900 C 1 HETATM 29 N N3 DTP . . . N 3 60.215 31.814 -7.468 1 284 ? N3 DTP 900 C 1 HETATM 30 C C4 DTP . . . N 3 61.141 32.721 -7.838 1 284 ? C4 DTP 900 C 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #