data_3UVP
#
_model_server_result.job_id            M83Gkt54UGFEZNu6Dks7XA 
_model_server_result.datetime_utc      '2024-10-20 20:39:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3uvp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":362}' 
#
_entry.id    3UVP 
#
_exptl.entry_id    3UVP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              292.369 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'octyl beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3UVP 
_cell.length_a            64 
_cell.length_b            68.8 
_cell.length_c            74.8 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3UVP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
_chem_comp.formula           'C14 H28 O6' 
_chem_comp.formula_weight    292.369 
_chem_comp.id                BOG 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              'octyl beta-D-glucopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 BOG sing 123 n n 
C1 C2 BOG sing 124 n n 
C1 O5 BOG sing 125 n n 
C1 H1 BOG sing 126 n n 
O1 C1' BOG sing 127 n n 
C2 O2 BOG sing 128 n n 
C2 C3 BOG sing 129 n n 
C2 H2 BOG sing 130 n n 
O2 HO2 BOG sing 131 n n 
C3 O3 BOG sing 132 n n 
C3 C4 BOG sing 133 n n 
C3 H3 BOG sing 134 n n 
O3 HO3 BOG sing 135 n n 
C4 O4 BOG sing 136 n n 
C4 C5 BOG sing 137 n n 
C4 H4 BOG sing 138 n n 
O4 HO4 BOG sing 139 n n 
C5 O5 BOG sing 140 n n 
C5 C6 BOG sing 141 n n 
C5 H5 BOG sing 142 n n 
C6 O6 BOG sing 143 n n 
C6 H61 BOG sing 144 n n 
C6 H62 BOG sing 145 n n 
O6 HO6 BOG sing 146 n n 
C1' C2' BOG sing 147 n n 
C1' "H1'1" BOG sing 148 n n 
C1' "H1'2" BOG sing 149 n n 
C2' C3' BOG sing 150 n n 
C2' "H2'1" BOG sing 151 n n 
C2' "H2'2" BOG sing 152 n n 
C3' C4' BOG sing 153 n n 
C3' "H3'1" BOG sing 154 n n 
C3' "H3'2" BOG sing 155 n n 
C4' C5' BOG sing 156 n n 
C4' "H4'1" BOG sing 157 n n 
C4' "H4'2" BOG sing 158 n n 
C5' C6' BOG sing 159 n n 
C5' "H5'1" BOG sing 160 n n 
C5' "H5'2" BOG sing 161 n n 
C6' C7' BOG sing 162 n n 
C6' "H6'1" BOG sing 163 n n 
C6' "H6'2" BOG sing 164 n n 
C7' C8' BOG sing 165 n n 
C7' "H7'1" BOG sing 166 n n 
C7' "H7'2" BOG sing 167 n n 
C8' "H8'1" BOG sing 168 n n 
C8' "H8'2" BOG sing 169 n n 
C8' "H8'3" BOG sing 170 n n 
#
_pdbx_chem_comp_identifier.comp_id            BOG 
_pdbx_chem_comp_identifier.identifier         b-octylglucoside 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     3UVP 
_atom_sites.fract_transf_matrix[1][1]    0.015625 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014535 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013369 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 048 A 1 361 1 048 DRG . 
C 3 BOG A 1 1000 1000 BOG BOG . 
D 3 BOG A 1 362 1000 BOG BOG . 
E 4 HOH A 1 363 1 HOH HOH . 
E 4 HOH A 2 364 2 HOH HOH . 
E 4 HOH A 3 365 3 HOH HOH . 
E 4 HOH A 4 366 5 HOH HOH . 
E 4 HOH A 5 367 7 HOH HOH . 
E 4 HOH A 6 368 8 HOH HOH . 
E 4 HOH A 7 369 9 HOH HOH . 
E 4 HOH A 8 370 10 HOH HOH . 
E 4 HOH A 9 371 11 HOH HOH . 
E 4 HOH A 10 372 13 HOH HOH . 
E 4 HOH A 11 373 14 HOH HOH . 
E 4 HOH A 12 374 15 HOH HOH . 
E 4 HOH A 13 375 16 HOH HOH . 
E 4 HOH A 14 376 18 HOH HOH . 
E 4 HOH A 15 377 19 HOH HOH . 
E 4 HOH A 16 378 20 HOH HOH . 
E 4 HOH A 17 379 24 HOH HOH . 
E 4 HOH A 18 380 25 HOH HOH . 
E 4 HOH A 19 381 26 HOH HOH . 
E 4 HOH A 20 382 29 HOH HOH . 
E 4 HOH A 21 383 32 HOH HOH . 
E 4 HOH A 22 384 33 HOH HOH . 
E 4 HOH A 23 385 34 HOH HOH . 
E 4 HOH A 24 386 37 HOH HOH . 
E 4 HOH A 25 387 39 HOH HOH . 
E 4 HOH A 26 388 41 HOH HOH . 
E 4 HOH A 27 389 42 HOH HOH . 
E 4 HOH A 28 390 45 HOH HOH . 
E 4 HOH A 29 391 46 HOH HOH . 
E 4 HOH A 30 392 47 HOH HOH . 
E 4 HOH A 31 393 48 HOH HOH . 
E 4 HOH A 32 394 49 HOH HOH . 
E 4 HOH A 33 395 50 HOH HOH . 
E 4 HOH A 34 396 51 HOH HOH . 
E 4 HOH A 35 397 56 HOH HOH . 
E 4 HOH A 36 398 57 HOH HOH . 
E 4 HOH A 37 399 59 HOH HOH . 
E 4 HOH A 38 400 60 HOH HOH . 
E 4 HOH A 39 401 61 HOH HOH . 
E 4 HOH A 40 402 63 HOH HOH . 
E 4 HOH A 41 403 64 HOH HOH . 
E 4 HOH A 42 404 65 HOH HOH . 
E 4 HOH A 43 405 66 HOH HOH . 
E 4 HOH A 44 406 67 HOH HOH . 
E 4 HOH A 45 407 68 HOH HOH . 
E 4 HOH A 46 408 69 HOH HOH . 
E 4 HOH A 47 409 70 HOH HOH . 
E 4 HOH A 48 410 71 HOH HOH . 
E 4 HOH A 49 411 72 HOH HOH . 
E 4 HOH A 50 412 73 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BOG . . . D 3 2.95 7.921 0.803 1 40.89 ? C1 BOG 362 A 1 
HETATM 2 O O1 BOG . . . D 3 3.494 6.732 1.362 1 40.22 ? O1 BOG 362 A 1 
HETATM 3 C C2 BOG . . . D 3 1.76 8.337 1.699 1 41.7 ? C2 BOG 362 A 1 
HETATM 4 O O2 BOG . . . D 3 0.674 7.433 1.495 1 42.71 ? O2 BOG 362 A 1 
HETATM 5 C C3 BOG . . . D 3 1.277 9.765 1.415 1 41.82 ? C3 BOG 362 A 1 
HETATM 6 O O3 BOG . . . D 3 0.516 10.208 2.543 1 43.94 ? O3 BOG 362 A 1 
HETATM 7 C C4 BOG . . . D 3 2.434 10.738 1.236 1 40.62 ? C4 BOG 362 A 1 
HETATM 8 O O4 BOG . . . D 3 1.929 11.963 0.693 1 44.3 ? O4 BOG 362 A 1 
HETATM 9 C C5 BOG . . . D 3 3.565 10.176 0.353 1 38.77 ? C5 BOG 362 A 1 
HETATM 10 O O5 BOG . . . D 3 4.01 8.886 0.773 1 39.52 ? O5 BOG 362 A 1 
HETATM 11 C C6 BOG . . . D 3 4.808 11.018 0.447 1 36.34 ? C6 BOG 362 A 1 
HETATM 12 O O6 BOG . . . D 3 5.396 10.869 1.743 1 35.96 ? O6 BOG 362 A 1 
HETATM 13 C C1' BOG . . . D 3 4.37 6.039 0.486 1 39.78 ? C1' BOG 362 A 1 
HETATM 14 C C2' BOG . . . D 3 4.592 4.664 1.127 1 40.03 ? C2' BOG 362 A 1 
HETATM 15 C C3' BOG . . . D 3 5.475 3.804 0.233 1 39.59 ? C3' BOG 362 A 1 
HETATM 16 C C4' BOG . . . D 3 5.835 2.507 0.945 1 38.94 ? C4' BOG 362 A 1 
HETATM 17 C C5' BOG . . . D 3 5.652 1.292 0.027 1 38.46 ? C5' BOG 362 A 1 
HETATM 18 C C6' BOG . . . D 3 6.098 0.014 0.722 1 38.07 ? C6' BOG 362 A 1 
HETATM 19 C C7' BOG . . . D 3 6.354 -1.061 -0.325 1 39.64 ? C7' BOG 362 A 1 
HETATM 20 C C8' BOG . . . D 3 5.288 -2.141 -0.183 1 40.41 ? C8' BOG 362 A 1 
#
_model_server_stats.io_time_ms              61 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           20 
#