data_3UVR # _model_server_result.job_id A6tazuamS2nN3pFWowbC3A _model_server_result.datetime_utc '2024-11-23 11:14:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3uvr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":362}' # _entry.id 3UVR # _exptl.entry_id 3UVR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3UVR _cell.length_a 62.858 _cell.length_b 68.246 _cell.length_c 73.698 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UVR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 148 n n C1 C2 BOG sing 149 n n C1 O5 BOG sing 150 n n C1 H1 BOG sing 151 n n O1 C1' BOG sing 152 n n C2 O2 BOG sing 153 n n C2 C3 BOG sing 154 n n C2 H2 BOG sing 155 n n O2 HO2 BOG sing 156 n n C3 O3 BOG sing 157 n n C3 C4 BOG sing 158 n n C3 H3 BOG sing 159 n n O3 HO3 BOG sing 160 n n C4 O4 BOG sing 161 n n C4 C5 BOG sing 162 n n C4 H4 BOG sing 163 n n O4 HO4 BOG sing 164 n n C5 O5 BOG sing 165 n n C5 C6 BOG sing 166 n n C5 H5 BOG sing 167 n n C6 O6 BOG sing 168 n n C6 H61 BOG sing 169 n n C6 H62 BOG sing 170 n n O6 HO6 BOG sing 171 n n C1' C2' BOG sing 172 n n C1' "H1'1" BOG sing 173 n n C1' "H1'2" BOG sing 174 n n C2' C3' BOG sing 175 n n C2' "H2'1" BOG sing 176 n n C2' "H2'2" BOG sing 177 n n C3' C4' BOG sing 178 n n C3' "H3'1" BOG sing 179 n n C3' "H3'2" BOG sing 180 n n C4' C5' BOG sing 181 n n C4' "H4'1" BOG sing 182 n n C4' "H4'2" BOG sing 183 n n C5' C6' BOG sing 184 n n C5' "H5'1" BOG sing 185 n n C5' "H5'2" BOG sing 186 n n C6' C7' BOG sing 187 n n C6' "H6'1" BOG sing 188 n n C6' "H6'2" BOG sing 189 n n C7' C8' BOG sing 190 n n C7' "H7'1" BOG sing 191 n n C7' "H7'2" BOG sing 192 n n C8' "H8'1" BOG sing 193 n n C8' "H8'2" BOG sing 194 n n C8' "H8'3" BOG sing 195 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 3UVR _atom_sites.fract_transf_matrix[1][1] 0.015909 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014653 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013569 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 06F A 1 361 1 06F DRG . C 3 BOG A 1 1000 1000 BOG BOG . D 3 BOG A 1 362 1000 BOG BOG . E 4 HOH A 1 363 1 HOH HOH . E 4 HOH A 2 364 2 HOH HOH . E 4 HOH A 3 365 3 HOH HOH . E 4 HOH A 4 366 4 HOH HOH . E 4 HOH A 5 367 5 HOH HOH . E 4 HOH A 6 368 6 HOH HOH . E 4 HOH A 7 369 7 HOH HOH . E 4 HOH A 8 370 8 HOH HOH . E 4 HOH A 9 371 9 HOH HOH . E 4 HOH A 10 372 10 HOH HOH . E 4 HOH A 11 373 11 HOH HOH . E 4 HOH A 12 374 12 HOH HOH . E 4 HOH A 13 375 13 HOH HOH . E 4 HOH A 14 376 14 HOH HOH . E 4 HOH A 15 377 15 HOH HOH . E 4 HOH A 16 378 16 HOH HOH . E 4 HOH A 17 379 17 HOH HOH . E 4 HOH A 18 380 18 HOH HOH . E 4 HOH A 19 381 19 HOH HOH . E 4 HOH A 20 382 20 HOH HOH . E 4 HOH A 21 383 21 HOH HOH . E 4 HOH A 22 384 22 HOH HOH . E 4 HOH A 23 385 23 HOH HOH . E 4 HOH A 24 386 24 HOH HOH . E 4 HOH A 25 387 25 HOH HOH . E 4 HOH A 26 388 26 HOH HOH . E 4 HOH A 27 389 27 HOH HOH . E 4 HOH A 28 390 28 HOH HOH . E 4 HOH A 29 391 29 HOH HOH . E 4 HOH A 30 392 30 HOH HOH . E 4 HOH A 31 393 31 HOH HOH . E 4 HOH A 32 394 32 HOH HOH . E 4 HOH A 33 395 33 HOH HOH . E 4 HOH A 34 396 34 HOH HOH . E 4 HOH A 35 397 35 HOH HOH . E 4 HOH A 36 398 36 HOH HOH . E 4 HOH A 37 399 37 HOH HOH . E 4 HOH A 38 400 38 HOH HOH . E 4 HOH A 39 401 39 HOH HOH . E 4 HOH A 40 402 40 HOH HOH . E 4 HOH A 41 403 41 HOH HOH . E 4 HOH A 42 404 42 HOH HOH . E 4 HOH A 43 405 43 HOH HOH . E 4 HOH A 44 406 44 HOH HOH . E 4 HOH A 45 407 45 HOH HOH . E 4 HOH A 46 408 46 HOH HOH . E 4 HOH A 47 409 47 HOH HOH . E 4 HOH A 48 410 48 HOH HOH . E 4 HOH A 49 411 49 HOH HOH . E 4 HOH A 50 412 51 HOH HOH . E 4 HOH A 51 413 52 HOH HOH . E 4 HOH A 52 414 53 HOH HOH . E 4 HOH A 53 415 54 HOH HOH . E 4 HOH A 54 416 55 HOH HOH . E 4 HOH A 55 417 56 HOH HOH . E 4 HOH A 56 418 57 HOH HOH . E 4 HOH A 57 419 58 HOH HOH . E 4 HOH A 58 420 59 HOH HOH . E 4 HOH A 59 421 60 HOH HOH . E 4 HOH A 60 422 61 HOH HOH . E 4 HOH A 61 423 62 HOH HOH . E 4 HOH A 62 424 63 HOH HOH . E 4 HOH A 63 425 64 HOH HOH . E 4 HOH A 64 426 65 HOH HOH . E 4 HOH A 65 427 66 HOH HOH . E 4 HOH A 66 428 67 HOH HOH . E 4 HOH A 67 429 68 HOH HOH . E 4 HOH A 68 430 69 HOH HOH . E 4 HOH A 69 431 70 HOH HOH . E 4 HOH A 70 432 71 HOH HOH . E 4 HOH A 71 433 72 HOH HOH . E 4 HOH A 72 434 73 HOH HOH . E 4 HOH A 73 435 74 HOH HOH . E 4 HOH A 74 436 75 HOH HOH . E 4 HOH A 75 437 76 HOH HOH . E 4 HOH A 76 438 77 HOH HOH . E 4 HOH A 77 439 78 HOH HOH . E 4 HOH A 78 440 79 HOH HOH . E 4 HOH A 79 441 80 HOH HOH . E 4 HOH A 80 442 81 HOH HOH . E 4 HOH A 81 443 82 HOH HOH . E 4 HOH A 82 444 83 HOH HOH . E 4 HOH A 83 445 84 HOH HOH . E 4 HOH A 84 446 85 HOH HOH . E 4 HOH A 85 447 86 HOH HOH . E 4 HOH A 86 448 87 HOH HOH . E 4 HOH A 87 449 89 HOH HOH . E 4 HOH A 88 450 90 HOH HOH . E 4 HOH A 89 451 91 HOH HOH . E 4 HOH A 90 452 92 HOH HOH . E 4 HOH A 91 453 93 HOH HOH . E 4 HOH A 92 454 94 HOH HOH . E 4 HOH A 93 455 95 HOH HOH . E 4 HOH A 94 456 96 HOH HOH . E 4 HOH A 95 457 97 HOH HOH . E 4 HOH A 96 458 98 HOH HOH . E 4 HOH A 97 459 99 HOH HOH . E 4 HOH A 98 460 100 HOH HOH . E 4 HOH A 99 461 101 HOH HOH . E 4 HOH A 100 462 102 HOH HOH . E 4 HOH A 101 463 103 HOH HOH . E 4 HOH A 102 464 104 HOH HOH . E 4 HOH A 103 465 105 HOH HOH . E 4 HOH A 104 466 106 HOH HOH . E 4 HOH A 105 467 107 HOH HOH . E 4 HOH A 106 468 109 HOH HOH . E 4 HOH A 107 469 110 HOH HOH . E 4 HOH A 108 470 111 HOH HOH . E 4 HOH A 109 471 112 HOH HOH . E 4 HOH A 110 472 113 HOH HOH . E 4 HOH A 111 473 114 HOH HOH . E 4 HOH A 112 474 115 HOH HOH . E 4 HOH A 113 475 116 HOH HOH . E 4 HOH A 114 476 117 HOH HOH . E 4 HOH A 115 477 118 HOH HOH . E 4 HOH A 116 478 119 HOH HOH . E 4 HOH A 117 479 120 HOH HOH . E 4 HOH A 118 480 121 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . D 3 -2.663 -7.677 0.953 1 21.92 ? C1 BOG 362 A 1 HETATM 2 O O1 BOG . . . D 3 -3.119 -6.405 1.359 1 23.57 ? O1 BOG 362 A 1 HETATM 3 C C2 BOG . . . D 3 -1.517 -8.032 1.878 1 22.19 ? C2 BOG 362 A 1 HETATM 4 O O2 BOG . . . D 3 -0.439 -7.151 1.584 1 28.26 ? O2 BOG 362 A 1 HETATM 5 C C3 BOG . . . D 3 -1.047 -9.437 1.552 1 21.5 ? C3 BOG 362 A 1 HETATM 6 O O3 BOG . . . D 3 -0.025 -9.792 2.446 1 19.97 ? O3 BOG 362 A 1 HETATM 7 C C4 BOG . . . D 3 -2.165 -10.455 1.683 1 19.97 ? C4 BOG 362 A 1 HETATM 8 O O4 BOG . . . D 3 -1.684 -11.697 1.18 1 19.85 ? O4 BOG 362 A 1 HETATM 9 C C5 BOG . . . D 3 -3.414 -10.019 0.923 1 19.87 ? C5 BOG 362 A 1 HETATM 10 O O5 BOG . . . D 3 -3.747 -8.632 1.042 1 20 ? O5 BOG 362 A 1 HETATM 11 C C6 BOG . . . D 3 -4.448 -10.624 1.855 1 19.45 ? C6 BOG 362 A 1 HETATM 12 O O6 BOG . . . D 3 -5.348 -11.336 1.073 1 22.28 ? O6 BOG 362 A 1 HETATM 13 C C1' BOG . . . D 3 -4.025 -5.881 0.366 1 24.11 ? C1' BOG 362 A 1 HETATM 14 C C2' BOG . . . D 3 -4.989 -4.978 1.132 1 25.54 ? C2' BOG 362 A 1 HETATM 15 C C3' BOG . . . D 3 -5.42 -3.772 0.308 1 27.19 ? C3' BOG 362 A 1 HETATM 16 C C4' BOG . . . D 3 -5.079 -2.504 1.078 1 31.5 ? C4' BOG 362 A 1 HETATM 17 C C5' BOG . . . D 3 -6.065 -1.367 0.836 1 33.18 ? C5' BOG 362 A 1 HETATM 18 C C6' BOG . . . D 3 -5.564 -0.459 -0.284 1 34.33 ? C6' BOG 362 A 1 HETATM 19 C C7' BOG . . . D 3 -6.248 0.899 -0.259 1 33.51 ? C7' BOG 362 A 1 HETATM 20 C C8' BOG . . . D 3 -5.201 1.998 -0.162 1 33.23 ? C8' BOG 362 A 1 # _model_server_stats.io_time_ms 97 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 20 #