data_3UVX # _model_server_result.job_id xZ_146euegd0xth4Vs7PDA _model_server_result.datetime_utc '2024-11-05 13:33:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3uvx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":170}' # _entry.id 3UVX # _exptl.entry_id 3UVX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 46.025 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FORMIC ACID' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3UVX _cell.length_a 43.94 _cell.length_b 52.38 _cell.length_c 57.62 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UVX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N ? 5 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C GLY 1 B GLY 11 1_555 B N ALY 2 B ALY 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale2 B C ALY 2 B ALY 12 1_555 B N GLY 3 B GLY 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.36 ? covale ? covale3 B C ALA 5 B ALA 15 1_555 B N ALY 6 B ALY 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale4 B C ALY 6 B ALY 16 1_555 B N ARG 7 B ARG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? metalc ? metalc1 C NA NA . A NA 1 1_555 I O HOH . A HOH 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc2 C NA NA . A NA 1 1_555 A OD1 ASN 20 A ASN 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc3 C NA NA . A NA 1 1_555 A OE1 GLN 23 A GLN 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc4 D NA NA . A NA 2 1_555 A OE1 GLU 8 A GLU 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.936 ? metalc ? metalc5 D NA NA . A NA 2 1_555 I O HOH . A HOH 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc6 D NA NA . A NA 2 1_555 I O HOH . A HOH 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? # _chem_comp.formula 'C H2 O2' _chem_comp.formula_weight 46.025 _chem_comp.id FMT _chem_comp.mon_nstd_flag . _chem_comp.name 'FORMIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O1 FMT doub 120 n n C O2 FMT sing 121 n n C H FMT sing 122 n n O2 HO2 FMT sing 123 n n # _atom_sites.entry_id 3UVX _atom_sites.fract_transf_matrix[1][1] 0.022758 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019091 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017355 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NA A 1 1 1 NA NA . D 3 NA A 1 2 2 NA NA . E 4 EDO A 1 169 1 EDO EDO . F 5 FMT A 1 170 1 FMT FMT . G 5 FMT A 1 171 2 FMT FMT . H 5 FMT A 1 3 3 FMT FMT . I 6 HOH A 1 4 4 HOH HOH . I 6 HOH A 2 6 6 HOH HOH . I 6 HOH A 3 7 7 HOH HOH . I 6 HOH A 4 8 8 HOH HOH . I 6 HOH A 5 9 9 HOH HOH . I 6 HOH A 6 10 10 HOH HOH . I 6 HOH A 7 12 12 HOH HOH . I 6 HOH A 8 13 13 HOH HOH . I 6 HOH A 9 14 14 HOH HOH . I 6 HOH A 10 17 17 HOH HOH . I 6 HOH A 11 20 20 HOH HOH . I 6 HOH A 12 21 21 HOH HOH . I 6 HOH A 13 23 23 HOH HOH . I 6 HOH A 14 24 24 HOH HOH . I 6 HOH A 15 25 25 HOH HOH . I 6 HOH A 16 27 27 HOH HOH . I 6 HOH A 17 28 28 HOH HOH . I 6 HOH A 18 30 30 HOH HOH . I 6 HOH A 19 32 32 HOH HOH . I 6 HOH A 20 33 33 HOH HOH . I 6 HOH A 21 34 34 HOH HOH . I 6 HOH A 22 35 35 HOH HOH . I 6 HOH A 23 36 36 HOH HOH . I 6 HOH A 24 37 37 HOH HOH . I 6 HOH A 25 39 39 HOH HOH . I 6 HOH A 26 41 41 HOH HOH . I 6 HOH A 27 172 2 HOH HOH . I 6 HOH A 28 173 3 HOH HOH . I 6 HOH A 29 174 44 HOH HOH . I 6 HOH A 30 175 46 HOH HOH . I 6 HOH A 31 176 48 HOH HOH . I 6 HOH A 32 177 50 HOH HOH . I 6 HOH A 33 178 51 HOH HOH . I 6 HOH A 34 179 52 HOH HOH . I 6 HOH A 35 180 57 HOH HOH . I 6 HOH A 36 181 58 HOH HOH . I 6 HOH A 37 182 59 HOH HOH . I 6 HOH A 38 183 60 HOH HOH . I 6 HOH A 39 184 61 HOH HOH . I 6 HOH A 40 185 62 HOH HOH . I 6 HOH A 41 186 64 HOH HOH . I 6 HOH A 42 187 65 HOH HOH . I 6 HOH A 43 188 66 HOH HOH . I 6 HOH A 44 189 67 HOH HOH . I 6 HOH A 45 190 68 HOH HOH . I 6 HOH A 46 191 69 HOH HOH . I 6 HOH A 47 192 70 HOH HOH . I 6 HOH A 48 193 74 HOH HOH . I 6 HOH A 49 194 75 HOH HOH . I 6 HOH A 50 195 76 HOH HOH . I 6 HOH A 51 196 77 HOH HOH . I 6 HOH A 52 197 78 HOH HOH . I 6 HOH A 53 198 79 HOH HOH . I 6 HOH A 54 199 80 HOH HOH . I 6 HOH A 55 200 81 HOH HOH . I 6 HOH A 56 201 82 HOH HOH . I 6 HOH A 57 202 83 HOH HOH . I 6 HOH A 58 203 84 HOH HOH . I 6 HOH A 59 204 87 HOH HOH . I 6 HOH A 60 205 88 HOH HOH . I 6 HOH A 61 206 89 HOH HOH . I 6 HOH A 62 207 90 HOH HOH . I 6 HOH A 63 208 91 HOH HOH . I 6 HOH A 64 209 92 HOH HOH . I 6 HOH A 65 210 93 HOH HOH . I 6 HOH A 66 211 96 HOH HOH . I 6 HOH A 67 212 97 HOH HOH . I 6 HOH A 68 213 98 HOH HOH . I 6 HOH A 69 214 99 HOH HOH . I 6 HOH A 70 215 100 HOH HOH . I 6 HOH A 71 216 101 HOH HOH . I 6 HOH A 72 217 102 HOH HOH . I 6 HOH A 73 218 103 HOH HOH . I 6 HOH A 74 219 104 HOH HOH . I 6 HOH A 75 220 105 HOH HOH . I 6 HOH A 76 221 106 HOH HOH . I 6 HOH A 77 222 108 HOH HOH . I 6 HOH A 78 223 109 HOH HOH . I 6 HOH A 79 224 110 HOH HOH . I 6 HOH A 80 225 111 HOH HOH . I 6 HOH A 81 226 112 HOH HOH . I 6 HOH A 82 227 113 HOH HOH . I 6 HOH A 83 228 114 HOH HOH . I 6 HOH A 84 229 115 HOH HOH . I 6 HOH A 85 230 116 HOH HOH . I 6 HOH A 86 231 119 HOH HOH . I 6 HOH A 87 232 120 HOH HOH . I 6 HOH A 88 233 121 HOH HOH . I 6 HOH A 89 234 122 HOH HOH . I 6 HOH A 90 235 123 HOH HOH . I 6 HOH A 91 236 124 HOH HOH . I 6 HOH A 92 237 125 HOH HOH . I 6 HOH A 93 238 126 HOH HOH . I 6 HOH A 94 239 118 HOH HOH . J 6 HOH B 1 38 38 HOH HOH . J 6 HOH B 2 43 43 HOH HOH . J 6 HOH B 3 94 94 HOH HOH . J 6 HOH B 4 107 107 HOH HOH . J 6 HOH B 5 117 117 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C FMT . . . F 5 51.68 35.43 1.747 1 24.6 ? C FMT 170 A 1 HETATM 2 O O1 FMT . . . F 5 51.786 36.649 1.794 1 34.19 ? O1 FMT 170 A 1 HETATM 3 O O2 FMT . . . F 5 50.656 34.842 2.364 1 18.81 ? O2 FMT 170 A 1 # _model_server_stats.io_time_ms 119 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 3 #