data_3UWP # _model_server_result.job_id lU5jAcWNxQuufAviEzTwHA _model_server_result.datetime_utc '2024-11-24 03:59:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3uwp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":421}' # _entry.id 3UWP # _exptl.entry_id 3UWP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 392.15 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2R,3R,4S,5R)-2-(4-AMINO-5-IODO-7H-PYRROLO[2,3-D]PYRIMIDIN-7-YL)-5-(HYDROXYMETHYL)TETRAHYDROFURAN-3,4-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3UWP _cell.length_a 149.784 _cell.length_b 149.784 _cell.length_c 53.521 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UWP _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O LYS 70 A LYS 52 1_555 E NA NA . A NA 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? metalc ? metalc2 A O LEU 71 A LEU 53 1_555 E NA NA . A NA 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.742 ? metalc ? metalc3 A O MET 73 A MET 55 1_555 E NA NA . A NA 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc4 A OD1 ASN 75 A ASN 57 1_555 E NA NA . A NA 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc5 E NA NA . A NA 424 1_555 L O HOH . A HOH 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc6 E NA NA . A NA 424 1_555 L O HOH . A HOH 481 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? # _chem_comp.formula 'C11 H13 I N4 O4' _chem_comp.formula_weight 392.15 _chem_comp.id 5ID _chem_comp.mon_nstd_flag . _chem_comp.name (2R,3R,4S,5R)-2-(4-AMINO-5-IODO-7H-PYRROLO[2,3-D]PYRIMIDIN-7-YL)-5-(HYDROXYMETHYL)TETRAHYDROFURAN-3,4-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 5-IODOTUBERCIDIN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5' C5' 5ID sing 1 n n O5' H5' 5ID sing 2 n n C5' C4' 5ID sing 3 n n C5' "H5'1" 5ID sing 4 n n C5' "H5'2" 5ID sing 5 n n C4' O4' 5ID sing 6 n n C4' C3' 5ID sing 7 n n C4' H4' 5ID sing 8 n n O4' C1' 5ID sing 9 n n C1' N9 5ID sing 10 n n C1' C2' 5ID sing 11 n n C1' H1' 5ID sing 12 n n N9 C8 5ID sing 13 n y N9 C4 5ID sing 14 n y C8 C7 5ID doub 15 n y C8 H8 5ID sing 16 n n C7 C5 5ID sing 17 n y C7 IAE 5ID sing 18 n n C5 C6 5ID doub 19 n y C5 C4 5ID sing 20 n y C6 N1 5ID sing 21 n y C6 N6 5ID sing 22 n n N1 C2 5ID doub 23 n y C2 N3 5ID sing 24 n y C2 H2 5ID sing 25 n n N3 C4 5ID doub 26 n y N6 H6N1 5ID sing 27 n n N6 H6N2 5ID sing 28 n n C2' O2' 5ID sing 29 n n C2' C3' 5ID sing 30 n n C2' H2' 5ID sing 31 n n O2' HA 5ID sing 32 n n C3' O3' 5ID sing 33 n n C3' H3' 5ID sing 34 n n O3' HB 5ID sing 35 n n # _atom_sites.entry_id 3UWP _atom_sites.fract_transf_matrix[1][1] 0.006676 _atom_sites.fract_transf_matrix[1][2] 0.003855 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007709 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018684 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5ID A 1 421 1 5ID 5ID . C 3 IOD A 1 422 1 IOD IOD . D 3 IOD A 1 423 2 IOD IOD . E 4 NA A 1 424 1 NA NA . F 5 UNX A 1 425 3 UNX UNX . G 5 UNX A 1 426 4 UNX UNX . H 5 UNX A 1 427 5 UNX UNX . I 5 UNX A 1 428 6 UNX UNX . J 5 UNX A 1 429 8 UNX UNX . K 5 UNX A 1 430 9 UNX UNX . L 6 HOH A 1 431 5 HOH HOH . L 6 HOH A 2 432 6 HOH HOH . L 6 HOH A 3 433 7 HOH HOH . L 6 HOH A 4 434 9 HOH HOH . L 6 HOH A 5 435 10 HOH HOH . L 6 HOH A 6 436 11 HOH HOH . L 6 HOH A 7 437 13 HOH HOH . L 6 HOH A 8 438 15 HOH HOH . L 6 HOH A 9 439 16 HOH HOH . L 6 HOH A 10 440 20 HOH HOH . L 6 HOH A 11 441 21 HOH HOH . L 6 HOH A 12 442 22 HOH HOH . L 6 HOH A 13 443 24 HOH HOH . L 6 HOH A 14 444 25 HOH HOH . L 6 HOH A 15 445 26 HOH HOH . L 6 HOH A 16 446 27 HOH HOH . L 6 HOH A 17 447 29 HOH HOH . L 6 HOH A 18 448 30 HOH HOH . L 6 HOH A 19 449 32 HOH HOH . L 6 HOH A 20 450 33 HOH HOH . L 6 HOH A 21 451 35 HOH HOH . L 6 HOH A 22 452 37 HOH HOH . L 6 HOH A 23 453 38 HOH HOH . L 6 HOH A 24 454 40 HOH HOH . L 6 HOH A 25 455 42 HOH HOH . L 6 HOH A 26 456 43 HOH HOH . L 6 HOH A 27 457 44 HOH HOH . L 6 HOH A 28 458 45 HOH HOH . L 6 HOH A 29 459 47 HOH HOH . L 6 HOH A 30 460 48 HOH HOH . L 6 HOH A 31 461 49 HOH HOH . L 6 HOH A 32 462 51 HOH HOH . L 6 HOH A 33 463 52 HOH HOH . L 6 HOH A 34 464 55 HOH HOH . L 6 HOH A 35 465 56 HOH HOH . L 6 HOH A 36 466 57 HOH HOH . L 6 HOH A 37 467 59 HOH HOH . L 6 HOH A 38 468 61 HOH HOH . L 6 HOH A 39 469 62 HOH HOH . L 6 HOH A 40 470 63 HOH HOH . L 6 HOH A 41 471 64 HOH HOH . L 6 HOH A 42 472 65 HOH HOH . L 6 HOH A 43 473 66 HOH HOH . L 6 HOH A 44 474 67 HOH HOH . L 6 HOH A 45 475 69 HOH HOH . L 6 HOH A 46 476 70 HOH HOH . L 6 HOH A 47 477 71 HOH HOH . L 6 HOH A 48 478 72 HOH HOH . L 6 HOH A 49 479 73 HOH HOH . L 6 HOH A 50 480 74 HOH HOH . L 6 HOH A 51 481 75 HOH HOH . L 6 HOH A 52 482 76 HOH HOH . L 6 HOH A 53 483 77 HOH HOH . L 6 HOH A 54 484 79 HOH HOH . L 6 HOH A 55 485 80 HOH HOH . L 6 HOH A 56 486 81 HOH HOH . L 6 HOH A 57 487 82 HOH HOH . L 6 HOH A 58 488 83 HOH HOH . L 6 HOH A 59 489 84 HOH HOH . L 6 HOH A 60 490 85 HOH HOH . L 6 HOH A 61 491 86 HOH HOH . L 6 HOH A 62 492 87 HOH HOH . L 6 HOH A 63 493 88 HOH HOH . L 6 HOH A 64 494 89 HOH HOH . L 6 HOH A 65 495 90 HOH HOH . L 6 HOH A 66 496 91 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5' 5ID . . . B 2 20.44 64.862 -5.763 1 41.97 ? O5' 5ID 421 A 1 HETATM 2 C C5' 5ID . . . B 2 20.853 65.038 -7.092 1 41.57 ? C5' 5ID 421 A 1 HETATM 3 C C4' 5ID . . . B 2 20.837 63.676 -7.724 1 39.07 ? C4' 5ID 421 A 1 HETATM 4 O O4' 5ID . . . B 2 19.451 63.351 -8.013 1 35.56 ? O4' 5ID 421 A 1 HETATM 5 C C1' 5ID . . . B 2 19.504 62.593 -9.259 1 36.28 ? C1' 5ID 421 A 1 HETATM 6 N N9 5ID . . . B 2 18.126 62.668 -9.751 1 40.65 ? N9 5ID 421 A 1 HETATM 7 C C8 5ID . . . B 2 17.526 63.809 -10.101 1 39.76 ? C8 5ID 421 A 1 HETATM 8 C C7 5ID . . . B 2 16.281 63.567 -10.462 1 42.76 ? C7 5ID 421 A 1 HETATM 9 C C5 5ID . . . B 2 16.041 62.185 -10.343 1 39.91 ? C5 5ID 421 A 1 HETATM 10 C C6 5ID . . . B 2 14.98 61.291 -10.547 1 41.41 ? C6 5ID 421 A 1 HETATM 11 N N1 5ID . . . B 2 15.172 59.983 -10.293 1 38.42 ? N1 5ID 421 A 1 HETATM 12 C C2 5ID . . . B 2 16.35 59.521 -9.85 1 39.59 ? C2 5ID 421 A 1 HETATM 13 N N3 5ID . . . B 2 17.386 60.337 -9.635 1 37.84 ? N3 5ID 421 A 1 HETATM 14 C C4 5ID . . . B 2 17.257 61.656 -9.88 1 38.63 ? C4 5ID 421 A 1 HETATM 15 N N6 5ID . . . B 2 13.781 61.685 -10.996 1 44.61 ? N6 5ID 421 A 1 HETATM 16 C C2' 5ID . . . B 2 20.404 63.464 -10.078 1 36.95 ? C2' 5ID 421 A 1 HETATM 17 O O2' 5ID . . . B 2 20.838 62.739 -11.226 1 34.73 ? O2' 5ID 421 A 1 HETATM 18 C C3' 5ID . . . B 2 21.563 63.685 -9.074 1 38.01 ? C3' 5ID 421 A 1 HETATM 19 O O3' 5ID . . . B 2 22.451 62.562 -9.091 1 34.35 ? O3' 5ID 421 A 1 HETATM 20 I IAE 5ID . . . B 2 15.069 65.218 -11.074 0.3 61.66 ? IAE 5ID 421 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 20 #