data_3UX4
#
_model_server_result.job_id            D4tcC1RqVduPm67pugQWiA 
_model_server_result.datetime_utc      '2024-11-05 04:16:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ux4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":301}' 
#
_entry.id    3UX4 
#
_exptl.entry_id    3UX4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              591.777 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHATE 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3UX4 
_cell.length_a            122.904 
_cell.length_b            122.904 
_cell.length_c            141.348 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3UX4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        94 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 42 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
#
_chem_comp.formula           'C31 H60 O8 P -1' 
_chem_comp.formula_weight    591.777 
_chem_comp.id                XP4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 P1 XP4 sing 374 n n 
O2 P1 XP4 doub 375 n n 
P1 O3 XP4 sing 376 n n 
P1 O4 XP4 sing 377 n n 
O3 H1 XP4 sing 378 n n 
O4 C1 XP4 sing 379 n n 
C1 C2 XP4 sing 380 n n 
C1 H2 XP4 sing 381 n n 
C1 H3 XP4 sing 382 n n 
C2 C3 XP4 sing 383 n n 
C2 O7 XP4 sing 384 n n 
C2 H4 XP4 sing 385 n n 
C3 O5 XP4 sing 386 n n 
C3 H5 XP4 sing 387 n n 
C3 H6 XP4 sing 388 n n 
O5 C4 XP4 sing 389 n n 
C4 O6 XP4 doub 390 n n 
C4 C5 XP4 sing 391 n n 
C5 C6 XP4 sing 392 n n 
C5 H7 XP4 sing 393 n n 
C5 H8 XP4 sing 394 n n 
C6 C7 XP4 sing 395 n n 
C6 H9 XP4 sing 396 n n 
C6 H10 XP4 sing 397 n n 
C7 C8 XP4 sing 398 n n 
C7 H11 XP4 sing 399 n n 
C7 H12 XP4 sing 400 n n 
C8 C9 XP4 sing 401 n n 
C8 H13 XP4 sing 402 n n 
C8 H14 XP4 sing 403 n n 
C9 C10 XP4 sing 404 n n 
C9 H15 XP4 sing 405 n n 
C9 H16 XP4 sing 406 n n 
C10 C11 XP4 sing 407 n n 
C10 H17 XP4 sing 408 n n 
C10 H18 XP4 sing 409 n n 
C11 C12 XP4 sing 410 n n 
C11 H19 XP4 sing 411 n n 
C11 H20 XP4 sing 412 n n 
C12 C13 XP4 sing 413 n n 
C12 H21 XP4 sing 414 n n 
C12 H22 XP4 sing 415 n n 
C13 C14 XP4 sing 416 n n 
C13 H23 XP4 sing 417 n n 
C13 H24 XP4 sing 418 n n 
C14 C15 XP4 sing 419 n n 
C14 H25 XP4 sing 420 n n 
C14 H26 XP4 sing 421 n n 
C15 C16 XP4 sing 422 n n 
C15 H27 XP4 sing 423 n n 
C15 H28 XP4 sing 424 n n 
C16 C17 XP4 sing 425 n n 
C16 H29 XP4 sing 426 n n 
C16 H30 XP4 sing 427 n n 
C17 H31 XP4 sing 428 n n 
C17 H32 XP4 sing 429 n n 
C17 H33 XP4 sing 430 n n 
O7 C18 XP4 sing 431 n n 
C18 O8 XP4 doub 432 n n 
C18 C19 XP4 sing 433 n n 
C19 C20 XP4 sing 434 n n 
C19 H34 XP4 sing 435 n n 
C19 H35 XP4 sing 436 n n 
C20 C21 XP4 sing 437 n n 
C20 H36 XP4 sing 438 n n 
C20 H37 XP4 sing 439 n n 
C21 C22 XP4 sing 440 n n 
C21 H38 XP4 sing 441 n n 
C21 H39 XP4 sing 442 n n 
C22 C23 XP4 sing 443 n n 
C22 H40 XP4 sing 444 n n 
C22 H41 XP4 sing 445 n n 
C23 C24 XP4 sing 446 n n 
C23 H42 XP4 sing 447 n n 
C23 H43 XP4 sing 448 n n 
C24 C25 XP4 sing 449 n n 
C24 H44 XP4 sing 450 n n 
C24 H45 XP4 sing 451 n n 
C25 C26 XP4 sing 452 n n 
C25 H46 XP4 sing 453 n n 
C25 H47 XP4 sing 454 n n 
C26 C27 XP4 sing 455 n n 
C26 H48 XP4 sing 456 n n 
C26 H49 XP4 sing 457 n n 
C27 C28 XP4 sing 458 n n 
C27 H50 XP4 sing 459 n n 
C27 H51 XP4 sing 460 n n 
C28 C29 XP4 sing 461 n n 
C28 H52 XP4 sing 462 n n 
C28 H53 XP4 sing 463 n n 
C29 C30 XP4 sing 464 n n 
C29 H54 XP4 sing 465 n n 
C29 H55 XP4 sing 466 n n 
C30 C31 XP4 sing 467 n n 
C30 H56 XP4 sing 468 n n 
C30 H57 XP4 sing 469 n n 
C31 H58 XP4 sing 470 n n 
C31 H59 XP4 sing 471 n n 
C31 H60 XP4 sing 472 n n 
#
_atom_sites.entry_id                     3UX4 
_atom_sites.fract_transf_matrix[1][1]    0.008136 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008136 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007075 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 XP4 A 1 201 302 XP4 XP4 . 
E 2 XP4 A 1 202 201 XP4 XP4 . 
F 2 XP4 B 1 301 301 XP4 XP4 . 
G 2 XP4 B 1 302 301 XP4 XP4 . 
H 2 XP4 B 1 303 302 XP4 XP4 . 
I 2 XP4 B 1 304 302 XP4 XP4 . 
J 2 XP4 B 1 305 201 XP4 XP4 . 
K 2 XP4 C 1 301 301 XP4 XP4 . 
L 2 XP4 C 1 302 201 XP4 XP4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 XP4 . . . K 2 3.164 2.545 -8.364 1 267.79 ? O1 XP4 301 C 1 
HETATM 2 O O2 XP4 . . . K 2 1.904 3.914 -9.964 1 246.77 ? O2 XP4 301 C 1 
HETATM 3 P P1 XP4 . . . K 2 2.17 3.709 -8.445 1 211.52 ? P1 XP4 301 C 1 
HETATM 4 O O3 XP4 . . . K 2 0.898 3.506 -7.643 1 273.94 ? O3 XP4 301 C 1 
HETATM 5 O O4 XP4 . . . K 2 3.064 4.908 -7.687 1 258.74 ? O4 XP4 301 C 1 
HETATM 6 C C1 XP4 . . . K 2 3 5.848 -6.544 1 166.04 ? C1 XP4 301 C 1 
HETATM 7 C C2 XP4 . . . K 2 2.499 7.283 -6.847 1 125.82 ? C2 XP4 301 C 1 
HETATM 8 C C3 XP4 . . . K 2 1.361 7.304 -5.824 1 148.35 ? C3 XP4 301 C 1 
HETATM 9 O O5 XP4 . . . K 2 0.833 8.612 -5.519 1 149.44 ? O5 XP4 301 C 1 
HETATM 10 C C4 XP4 . . . K 2 -0.553 8.978 -5.784 1 153.28 ? C4 XP4 301 C 1 
HETATM 11 O O6 XP4 . . . K 2 -1.39 8.587 -5.021 1 168.98 ? O6 XP4 301 C 1 
HETATM 12 C C5 XP4 . . . K 2 -1.302 9.709 -6.889 1 139.07 ? C5 XP4 301 C 1 
HETATM 13 C C6 XP4 . . . K 2 -2.792 9.875 -6.5 1 136.82 ? C6 XP4 301 C 1 
HETATM 14 C C7 XP4 . . . K 2 -3.488 10.765 -7.486 1 95.85 ? C7 XP4 301 C 1 
HETATM 15 C C8 XP4 . . . K 2 -4.827 10.131 -7.86 1 86.8 ? C8 XP4 301 C 1 
HETATM 16 C C9 XP4 . . . K 2 -5.538 11.031 -8.861 1 89.77 ? C9 XP4 301 C 1 
HETATM 17 C C10 XP4 . . . K 2 -7.047 10.927 -8.677 1 86.54 ? C10 XP4 301 C 1 
HETATM 18 C C11 XP4 . . . K 2 -7.696 12.115 -9.333 1 97.09 ? C11 XP4 301 C 1 
HETATM 19 C C12 XP4 . . . K 2 -9.131 12.292 -8.893 1 107.65 ? C12 XP4 301 C 1 
HETATM 20 C C13 XP4 . . . K 2 -9.69 13.63 -9.419 1 165.63 ? C13 XP4 301 C 1 
HETATM 21 C C14 XP4 . . . K 2 -10.212 14.591 -8.324 1 177.77 ? C14 XP4 301 C 1 
HETATM 22 C C15 XP4 . . . K 2 -9.746 16.05 -8.482 1 195.31 ? C15 XP4 301 C 1 
HETATM 23 C C16 XP4 . . . K 2 -10.698 17.095 -7.865 1 133.38 ? C16 XP4 301 C 1 
HETATM 24 C C17 XP4 . . . K 2 -9.961 18.28 -7.258 1 186.66 ? C17 XP4 301 C 1 
HETATM 25 O O7 XP4 . . . K 2 3.443 8.398 -6.68 1 131.2 ? O7 XP4 301 C 1 
HETATM 26 C C18 XP4 . . . K 2 3.133 9.69 -7.397 1 152.75 ? C18 XP4 301 C 1 
HETATM 27 O O8 XP4 . . . K 2 3.324 9.762 -8.616 1 148.42 ? O8 XP4 301 C 1 
HETATM 28 C C19 XP4 . . . K 2 2.612 10.92 -6.634 1 124.08 ? C19 XP4 301 C 1 
HETATM 29 C C20 XP4 . . . K 2 2.04 12.09 -7.454 1 79.23 ? C20 XP4 301 C 1 
HETATM 30 C C21 XP4 . . . K 2 1.396 13.176 -6.569 1 99.34 ? C21 XP4 301 C 1 
HETATM 31 C C22 XP4 . . . K 2 0.049 13.586 -7.167 1 117.8 ? C22 XP4 301 C 1 
HETATM 32 C C23 XP4 . . . K 2 -0.496 14.929 -6.681 1 63.58 ? C23 XP4 301 C 1 
HETATM 33 C C24 XP4 . . . K 2 -2.051 15.029 -6.697 1 120.87 ? C24 XP4 301 C 1 
HETATM 34 C C25 XP4 . . . K 2 -2.602 16.426 -6.26 1 104.22 ? C25 XP4 301 C 1 
HETATM 35 C C26 XP4 . . . K 2 -3.947 16.894 -6.902 1 112.55 ? C26 XP4 301 C 1 
HETATM 36 C C27 XP4 . . . K 2 -4.652 18.091 -6.21 1 119.53 ? C27 XP4 301 C 1 
HETATM 37 C C28 XP4 . . . K 2 -5.114 19.256 -7.08 1 84.7 ? C28 XP4 301 C 1 
HETATM 38 C C29 XP4 . . . K 2 -5.292 20.496 -6.205 1 109.73 ? C29 XP4 301 C 1 
HETATM 39 C C30 XP4 . . . K 2 -5.922 21.627 -7.051 1 127.24 ? C30 XP4 301 C 1 
HETATM 40 C C31 XP4 . . . K 2 -7.067 22.406 -6.4 1 114.46 ? C31 XP4 301 C 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           40 
#