data_3UX4 # _model_server_result.job_id UedNUZDlFPAmNByJi7T3hA _model_server_result.datetime_utc '2024-11-05 04:23:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ux4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":305}' # _entry.id 3UX4 # _exptl.entry_id 3UX4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 591.777 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHATE _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3UX4 _cell.length_a 122.904 _cell.length_b 122.904 _cell.length_c 141.348 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UX4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N # _chem_comp.formula 'C31 H60 O8 P -1' _chem_comp.formula_weight 591.777 _chem_comp.id XP4 _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 P1 XP4 sing 374 n n O2 P1 XP4 doub 375 n n P1 O3 XP4 sing 376 n n P1 O4 XP4 sing 377 n n O3 H1 XP4 sing 378 n n O4 C1 XP4 sing 379 n n C1 C2 XP4 sing 380 n n C1 H2 XP4 sing 381 n n C1 H3 XP4 sing 382 n n C2 C3 XP4 sing 383 n n C2 O7 XP4 sing 384 n n C2 H4 XP4 sing 385 n n C3 O5 XP4 sing 386 n n C3 H5 XP4 sing 387 n n C3 H6 XP4 sing 388 n n O5 C4 XP4 sing 389 n n C4 O6 XP4 doub 390 n n C4 C5 XP4 sing 391 n n C5 C6 XP4 sing 392 n n C5 H7 XP4 sing 393 n n C5 H8 XP4 sing 394 n n C6 C7 XP4 sing 395 n n C6 H9 XP4 sing 396 n n C6 H10 XP4 sing 397 n n C7 C8 XP4 sing 398 n n C7 H11 XP4 sing 399 n n C7 H12 XP4 sing 400 n n C8 C9 XP4 sing 401 n n C8 H13 XP4 sing 402 n n C8 H14 XP4 sing 403 n n C9 C10 XP4 sing 404 n n C9 H15 XP4 sing 405 n n C9 H16 XP4 sing 406 n n C10 C11 XP4 sing 407 n n C10 H17 XP4 sing 408 n n C10 H18 XP4 sing 409 n n C11 C12 XP4 sing 410 n n C11 H19 XP4 sing 411 n n C11 H20 XP4 sing 412 n n C12 C13 XP4 sing 413 n n C12 H21 XP4 sing 414 n n C12 H22 XP4 sing 415 n n C13 C14 XP4 sing 416 n n C13 H23 XP4 sing 417 n n C13 H24 XP4 sing 418 n n C14 C15 XP4 sing 419 n n C14 H25 XP4 sing 420 n n C14 H26 XP4 sing 421 n n C15 C16 XP4 sing 422 n n C15 H27 XP4 sing 423 n n C15 H28 XP4 sing 424 n n C16 C17 XP4 sing 425 n n C16 H29 XP4 sing 426 n n C16 H30 XP4 sing 427 n n C17 H31 XP4 sing 428 n n C17 H32 XP4 sing 429 n n C17 H33 XP4 sing 430 n n O7 C18 XP4 sing 431 n n C18 O8 XP4 doub 432 n n C18 C19 XP4 sing 433 n n C19 C20 XP4 sing 434 n n C19 H34 XP4 sing 435 n n C19 H35 XP4 sing 436 n n C20 C21 XP4 sing 437 n n C20 H36 XP4 sing 438 n n C20 H37 XP4 sing 439 n n C21 C22 XP4 sing 440 n n C21 H38 XP4 sing 441 n n C21 H39 XP4 sing 442 n n C22 C23 XP4 sing 443 n n C22 H40 XP4 sing 444 n n C22 H41 XP4 sing 445 n n C23 C24 XP4 sing 446 n n C23 H42 XP4 sing 447 n n C23 H43 XP4 sing 448 n n C24 C25 XP4 sing 449 n n C24 H44 XP4 sing 450 n n C24 H45 XP4 sing 451 n n C25 C26 XP4 sing 452 n n C25 H46 XP4 sing 453 n n C25 H47 XP4 sing 454 n n C26 C27 XP4 sing 455 n n C26 H48 XP4 sing 456 n n C26 H49 XP4 sing 457 n n C27 C28 XP4 sing 458 n n C27 H50 XP4 sing 459 n n C27 H51 XP4 sing 460 n n C28 C29 XP4 sing 461 n n C28 H52 XP4 sing 462 n n C28 H53 XP4 sing 463 n n C29 C30 XP4 sing 464 n n C29 H54 XP4 sing 465 n n C29 H55 XP4 sing 466 n n C30 C31 XP4 sing 467 n n C30 H56 XP4 sing 468 n n C30 H57 XP4 sing 469 n n C31 H58 XP4 sing 470 n n C31 H59 XP4 sing 471 n n C31 H60 XP4 sing 472 n n # _atom_sites.entry_id 3UX4 _atom_sites.fract_transf_matrix[1][1] 0.008136 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008136 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007075 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 XP4 A 1 201 302 XP4 XP4 . E 2 XP4 A 1 202 201 XP4 XP4 . F 2 XP4 B 1 301 301 XP4 XP4 . G 2 XP4 B 1 302 301 XP4 XP4 . H 2 XP4 B 1 303 302 XP4 XP4 . I 2 XP4 B 1 304 302 XP4 XP4 . J 2 XP4 B 1 305 201 XP4 XP4 . K 2 XP4 C 1 301 301 XP4 XP4 . L 2 XP4 C 1 302 201 XP4 XP4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C3 XP4 . . . J 2 -20.667 21.787 6.878 1 173.86 ? C3 XP4 305 B 1 HETATM 2 O O5 XP4 . . . J 2 -19.87 20.686 6.429 1 178.28 ? O5 XP4 305 B 1 HETATM 3 C C4 XP4 . . . J 2 -18.967 20.711 5.232 1 176.91 ? C4 XP4 305 B 1 HETATM 4 O O6 XP4 . . . J 2 -19.189 21.398 4.219 1 231.14 ? O6 XP4 305 B 1 HETATM 5 C C5 XP4 . . . J 2 -17.725 19.825 5.246 1 209.92 ? C5 XP4 305 B 1 HETATM 6 C C6 XP4 . . . J 2 -16.463 20.566 4.809 1 244.43 ? C6 XP4 305 B 1 HETATM 7 C C7 XP4 . . . J 2 -15.195 20.166 5.602 1 96.66 ? C7 XP4 305 B 1 HETATM 8 C C8 XP4 . . . J 2 -14.067 21.244 5.447 1 133.33 ? C8 XP4 305 B 1 HETATM 9 C C9 XP4 . . . J 2 -12.668 20.759 5.872 1 224.28 ? C9 XP4 305 B 1 HETATM 10 C C10 XP4 . . . J 2 -11.546 21.767 5.59 1 99.71 ? C10 XP4 305 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #