data_3UXP # _model_server_result.job_id F0d0OSb4E3iluM6FOEGLHw _model_server_result.datetime_utc '2025-03-05 22:14:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3uxp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":337}' # _entry.id 3UXP # _exptl.entry_id 3UXP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.04 _cell.angle_gamma 90 _cell.entry_id 3UXP _cell.length_a 100.321 _cell.length_b 56.607 _cell.length_c 93.144 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UXP _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G,H,I,J,K,P,R,S 1 1 B,E,F,L,M,N,O,Q,T,U 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 I N N ? 5 J N N ? 5 K N N ? 5 M N N ? 5 N N N ? 5 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O THR 101 A THR 101 1_555 J NA NA . A NA 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc2 A O VAL 103 A VAL 103 1_555 J NA NA . A NA 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc3 A O ILE 106 A ILE 106 1_555 J NA NA . A NA 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc4 A OD1 ASP 190 A ASP 190 1_555 I NA NA . A NA 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc5 A O ASP 190 A ASP 190 1_555 I NA NA . A NA 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? metalc ? metalc6 A OD2 ASP 192 A ASP 192 1_555 I NA NA . A NA 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc7 G O1B D3T . A D3T 336 1_555 I NA NA . A NA 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc8 G O1A D3T . A D3T 336 1_555 I NA NA . A NA 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc9 J NA NA . A NA 339 1_555 C OP2 DA 6 P DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc10 B O THR 101 B THR 101 1_555 N NA NA . B NA 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc11 B O VAL 103 B VAL 103 1_555 N NA NA . B NA 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? metalc ? metalc12 B O ILE 106 B ILE 106 1_555 N NA NA . B NA 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.89 ? metalc ? metalc13 B OD2 ASP 192 B ASP 192 1_555 M NA NA . B NA 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? metalc ? metalc14 L O1A D3T . B D3T 336 1_555 M NA NA . B NA 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? metalc ? metalc15 L O1B D3T . B D3T 336 1_555 M NA NA . B NA 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.024 ? metalc ? metalc16 L O3B D3T . B D3T 336 1_555 M NA NA . B NA 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.125 ? metalc ? metalc17 N NA NA . B NA 338 1_555 E OP2 DA 6 D DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? hydrog WATSON-CRICK hydrog1 C N3 DT 2 P DT 2 1_555 D N1 DA 7 T DA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 C O4 DT 2 P DT 2 1_555 D N6 DA 7 T DA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 C N1 DG 3 P DG 3 1_555 D N3 DC 6 T DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 C N2 DG 3 P DG 3 1_555 D O2 DC 6 T DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 C O6 DG 3 P DG 3 1_555 D N4 DC 6 T DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 C N3 DT 4 P DT 4 1_555 D N1 DA 5 T DA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 C O4 DT 4 P DT 4 1_555 D N6 DA 5 T DA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 C N1 DG 5 P DG 5 1_555 D N3 DC 4 T DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 C N2 DG 5 P DG 5 1_555 D O2 DC 4 T DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 C O6 DG 5 P DG 5 1_555 D N4 DC 4 T DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 C N1 DA 6 P DA 6 1_555 D N3 DT 3 T DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 C N6 DA 6 P DA 6 1_555 D O4 DT 3 T DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DC PAIR' hydrog13 C N2 DG 7 P DG 7 1_555 D O2 DC 2 T DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 E N3 DT 2 D DT 2 1_555 F N1 DA 7 E DA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 E O4 DT 2 D DT 2 1_555 F N6 DA 7 E DA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 E N1 DG 3 D DG 3 1_555 F N3 DC 6 E DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 E N2 DG 3 D DG 3 1_555 F O2 DC 6 E DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 E O6 DG 3 D DG 3 1_555 F N4 DC 6 E DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 E N3 DT 4 D DT 4 1_555 F N1 DA 5 E DA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 E O4 DT 4 D DT 4 1_555 F N6 DA 5 E DA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 E N1 DG 5 D DG 5 1_555 F N3 DC 4 E DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 E N2 DG 5 D DG 5 1_555 F O2 DC 4 E DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 E O6 DG 5 D DG 5 1_555 F N4 DC 4 E DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 E N1 DA 6 D DA 6 1_555 F N3 DT 3 E DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 E N6 DA 6 D DA 6 1_555 F O4 DT 3 E DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DC PAIR' hydrog26 E N1 DG 7 D DG 7 1_555 F N3 DC 2 E DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DT MISPAIR' hydrog27 E N2 DG 7 D DG 7 1_555 F O2 DT 3 E DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3UXP _atom_sites.fract_transf_matrix[1][1] 0.009968 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002126 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017666 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010978 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 D3T A 1 336 1 D3T D3T . H 5 NA A 1 337 1 NA NA . I 5 NA A 1 338 2 NA NA . J 5 NA A 1 339 3 NA NA . K 5 NA A 1 340 6 NA NA . L 4 D3T B 1 336 1 D3T D3T . M 5 NA B 1 337 4 NA NA . N 5 NA B 1 338 5 NA NA . O 5 NA B 1 339 7 NA NA . P 6 HOH A 1 341 2 HOH HOH . P 6 HOH A 2 342 7 HOH HOH . P 6 HOH A 3 343 10 HOH HOH . P 6 HOH A 4 344 20 HOH HOH . P 6 HOH A 5 345 21 HOH HOH . P 6 HOH A 6 346 23 HOH HOH . P 6 HOH A 7 347 24 HOH HOH . P 6 HOH A 8 348 28 HOH HOH . P 6 HOH A 9 349 29 HOH HOH . P 6 HOH A 10 350 37 HOH HOH . P 6 HOH A 11 351 39 HOH HOH . P 6 HOH A 12 352 43 HOH HOH . P 6 HOH A 13 353 44 HOH HOH . Q 6 HOH B 1 340 1 HOH HOH . Q 6 HOH B 2 341 5 HOH HOH . Q 6 HOH B 3 342 6 HOH HOH . Q 6 HOH B 4 343 9 HOH HOH . Q 6 HOH B 5 344 11 HOH HOH . Q 6 HOH B 6 345 15 HOH HOH . Q 6 HOH B 7 346 22 HOH HOH . Q 6 HOH B 8 347 25 HOH HOH . Q 6 HOH B 9 348 26 HOH HOH . Q 6 HOH B 10 349 30 HOH HOH . Q 6 HOH B 11 350 31 HOH HOH . Q 6 HOH B 12 351 33 HOH HOH . Q 6 HOH B 13 352 35 HOH HOH . Q 6 HOH B 14 353 40 HOH HOH . Q 6 HOH B 15 354 41 HOH HOH . Q 6 HOH B 16 355 45 HOH HOH . Q 6 HOH B 17 356 47 HOH HOH . R 6 HOH P 1 14 14 HOH HOH . R 6 HOH P 2 34 34 HOH HOH . S 6 HOH T 1 12 12 HOH HOH . S 6 HOH T 2 18 18 HOH HOH . S 6 HOH T 3 36 36 HOH HOH . S 6 HOH T 4 46 46 HOH HOH . T 6 HOH D 1 19 19 HOH HOH . U 6 HOH E 1 12 3 HOH HOH . U 6 HOH E 2 13 4 HOH HOH . U 6 HOH E 3 17 17 HOH HOH . U 6 HOH E 4 38 38 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id M _atom_site.label_entity_id 5 _atom_site.Cartn_x 38.752 _atom_site.Cartn_y 10.938 _atom_site.Cartn_z -26.999 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 84.61 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 337 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #