data_3UY4 # _model_server_result.job_id u4jGjMaqFavNoAMyGjzybg _model_server_result.datetime_utc '2024-12-28 23:51:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3uy4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 3UY4 # _exptl.entry_id 3UY4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3UY4 _cell.length_a 83.401 _cell.length_b 83.401 _cell.length_c 150.162 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UY4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_575 x,x-y+2,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -83.401 144.454769 25.027 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 3 A ALA 0 1_555 A N MSE 4 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C MSE 4 A MSE 1 1_555 A N GLN 5 A GLN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale3 A C THR 32 A THR 29 1_555 A N MSE 33 A MSE 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C MSE 33 A MSE 30 1_555 A N GLY 34 A GLY 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 A C PRO 61 A PRO 58 1_555 A N MSE 62 A MSE 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale6 A C MSE 62 A MSE 59 1_555 A N GLN 63 A GLN 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale7 A C LYS 82 A LYS 79 1_555 A N MSE 83 A MSE 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale8 A C MSE 83 A MSE 80 1_555 A N CYS 84 A CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale9 A C ASP 90 A ASP 87 1_555 A N MSE 91 A MSE 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale10 A C MSE 91 A MSE 88 1_555 A N VAL 92 A VAL 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale11 A C GLN 99 A GLN 96 1_555 A N MSE 100 A MSE 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale12 A C MSE 100 A MSE 97 1_555 A N TYR 101 A TYR 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale13 A C ASP 110 A ASP 107 1_555 A N MSE 111 A MSE 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale14 A C MSE 111 A MSE 108 1_555 A N ASN 112 A ASN 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale15 A C TYR 147 A TYR 144 1_555 A N MSE 148 A MSE 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale16 A C MSE 148 A MSE 145 1_555 A N GLY 149 A GLY 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale17 A C HIS 161 A HIS 158 1_555 A N MSE 162 A MSE 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale18 A C MSE 162 A MSE 159 1_555 A N VAL 163 A VAL 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale19 A C ALA 228 A ALA 225 1_555 A N MSE 229 A MSE 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale20 A C MSE 229 A MSE 226 1_555 A N LYS 230 A LYS 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale21 A C THR 251 A THR 248 1_555 A N MSE 252 A MSE 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale22 A C MSE 252 A MSE 249 1_555 A N GLU 253 A GLU 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 168 n n C1 C2 GOL sing 169 n n C1 H11 GOL sing 170 n n C1 H12 GOL sing 171 n n O1 HO1 GOL sing 172 n n C2 O2 GOL sing 173 n n C2 C3 GOL sing 174 n n C2 H2 GOL sing 175 n n O2 HO2 GOL sing 176 n n C3 O3 GOL sing 177 n n C3 H31 GOL sing 178 n n C3 H32 GOL sing 179 n n O3 HO3 GOL sing 180 n n # _atom_sites.entry_id 3UY4 _atom_sites.fract_transf_matrix[1][1] 0.01199 _atom_sites.fract_transf_matrix[1][2] 0.006923 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013845 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006659 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AMP A 1 301 301 AMP AMP . C 3 PAU A 1 302 302 PAU PTA . D 4 GOL A 1 303 303 GOL GOL . E 5 HOH A 1 283 1 HOH HOH . E 5 HOH A 2 284 2 HOH HOH . E 5 HOH A 3 285 3 HOH HOH . E 5 HOH A 4 286 4 HOH HOH . E 5 HOH A 5 287 5 HOH HOH . E 5 HOH A 6 288 6 HOH HOH . E 5 HOH A 7 289 7 HOH HOH . E 5 HOH A 8 290 8 HOH HOH . E 5 HOH A 9 291 9 HOH HOH . E 5 HOH A 10 292 10 HOH HOH . E 5 HOH A 11 293 11 HOH HOH . E 5 HOH A 12 294 12 HOH HOH . E 5 HOH A 13 295 13 HOH HOH . E 5 HOH A 14 296 14 HOH HOH . E 5 HOH A 15 297 15 HOH HOH . E 5 HOH A 16 298 16 HOH HOH . E 5 HOH A 17 299 17 HOH HOH . E 5 HOH A 18 300 18 HOH HOH . E 5 HOH A 19 304 19 HOH HOH . E 5 HOH A 20 305 20 HOH HOH . E 5 HOH A 21 306 21 HOH HOH . E 5 HOH A 22 307 22 HOH HOH . E 5 HOH A 23 308 23 HOH HOH . E 5 HOH A 24 309 24 HOH HOH . E 5 HOH A 25 310 25 HOH HOH . E 5 HOH A 26 311 26 HOH HOH . E 5 HOH A 27 312 27 HOH HOH . E 5 HOH A 28 313 28 HOH HOH . E 5 HOH A 29 314 29 HOH HOH . E 5 HOH A 30 315 30 HOH HOH . E 5 HOH A 31 316 31 HOH HOH . E 5 HOH A 32 317 32 HOH HOH . E 5 HOH A 33 318 33 HOH HOH . E 5 HOH A 34 319 34 HOH HOH . E 5 HOH A 35 320 35 HOH HOH . E 5 HOH A 36 321 36 HOH HOH . E 5 HOH A 37 322 37 HOH HOH . E 5 HOH A 38 323 38 HOH HOH . E 5 HOH A 39 324 39 HOH HOH . E 5 HOH A 40 325 40 HOH HOH . E 5 HOH A 41 326 41 HOH HOH . E 5 HOH A 42 327 42 HOH HOH . E 5 HOH A 43 328 43 HOH HOH . E 5 HOH A 44 329 44 HOH HOH . E 5 HOH A 45 330 45 HOH HOH . E 5 HOH A 46 331 46 HOH HOH . E 5 HOH A 47 332 47 HOH HOH . E 5 HOH A 48 333 48 HOH HOH . E 5 HOH A 49 334 49 HOH HOH . E 5 HOH A 50 335 50 HOH HOH . E 5 HOH A 51 336 51 HOH HOH . E 5 HOH A 52 337 52 HOH HOH . E 5 HOH A 53 338 53 HOH HOH . E 5 HOH A 54 339 54 HOH HOH . E 5 HOH A 55 340 55 HOH HOH . E 5 HOH A 56 341 56 HOH HOH . E 5 HOH A 57 342 57 HOH HOH . E 5 HOH A 58 343 58 HOH HOH . E 5 HOH A 59 344 59 HOH HOH . E 5 HOH A 60 345 60 HOH HOH . E 5 HOH A 61 346 61 HOH HOH . E 5 HOH A 62 347 62 HOH HOH . E 5 HOH A 63 348 63 HOH HOH . E 5 HOH A 64 349 64 HOH HOH . E 5 HOH A 65 350 65 HOH HOH . E 5 HOH A 66 351 66 HOH HOH . E 5 HOH A 67 352 67 HOH HOH . E 5 HOH A 68 353 68 HOH HOH . E 5 HOH A 69 354 69 HOH HOH . E 5 HOH A 70 355 70 HOH HOH . E 5 HOH A 71 356 71 HOH HOH . E 5 HOH A 72 357 72 HOH HOH . E 5 HOH A 73 358 73 HOH HOH . E 5 HOH A 74 359 74 HOH HOH . E 5 HOH A 75 360 75 HOH HOH . E 5 HOH A 76 361 76 HOH HOH . E 5 HOH A 77 362 77 HOH HOH . E 5 HOH A 78 363 78 HOH HOH . E 5 HOH A 79 364 79 HOH HOH . E 5 HOH A 80 365 80 HOH HOH . E 5 HOH A 81 366 81 HOH HOH . E 5 HOH A 82 367 82 HOH HOH . E 5 HOH A 83 368 83 HOH HOH . E 5 HOH A 84 369 84 HOH HOH . E 5 HOH A 85 370 85 HOH HOH . E 5 HOH A 86 371 86 HOH HOH . E 5 HOH A 87 372 87 HOH HOH . E 5 HOH A 88 373 88 HOH HOH . E 5 HOH A 89 374 89 HOH HOH . E 5 HOH A 90 375 90 HOH HOH . E 5 HOH A 91 376 91 HOH HOH . E 5 HOH A 92 377 92 HOH HOH . E 5 HOH A 93 378 93 HOH HOH . E 5 HOH A 94 379 94 HOH HOH . E 5 HOH A 95 380 95 HOH HOH . E 5 HOH A 96 381 96 HOH HOH . E 5 HOH A 97 382 97 HOH HOH . E 5 HOH A 98 383 98 HOH HOH . E 5 HOH A 99 384 99 HOH HOH . E 5 HOH A 100 385 100 HOH HOH . E 5 HOH A 101 386 101 HOH HOH . E 5 HOH A 102 387 102 HOH HOH . E 5 HOH A 103 388 103 HOH HOH . E 5 HOH A 104 389 104 HOH HOH . E 5 HOH A 105 390 105 HOH HOH . E 5 HOH A 106 391 106 HOH HOH . E 5 HOH A 107 392 107 HOH HOH . E 5 HOH A 108 393 108 HOH HOH . E 5 HOH A 109 394 109 HOH HOH . E 5 HOH A 110 395 110 HOH HOH . E 5 HOH A 111 396 111 HOH HOH . E 5 HOH A 112 397 112 HOH HOH . E 5 HOH A 113 398 113 HOH HOH . E 5 HOH A 114 399 114 HOH HOH . E 5 HOH A 115 400 115 HOH HOH . E 5 HOH A 116 401 116 HOH HOH . E 5 HOH A 117 402 117 HOH HOH . E 5 HOH A 118 403 118 HOH HOH . E 5 HOH A 119 404 119 HOH HOH . E 5 HOH A 120 405 120 HOH HOH . E 5 HOH A 121 406 121 HOH HOH . E 5 HOH A 122 407 122 HOH HOH . E 5 HOH A 123 408 123 HOH HOH . E 5 HOH A 124 409 124 HOH HOH . E 5 HOH A 125 410 125 HOH HOH . E 5 HOH A 126 411 126 HOH HOH . E 5 HOH A 127 412 127 HOH HOH . E 5 HOH A 128 413 128 HOH HOH . E 5 HOH A 129 414 129 HOH HOH . E 5 HOH A 130 415 130 HOH HOH . E 5 HOH A 131 416 131 HOH HOH . E 5 HOH A 132 417 132 HOH HOH . E 5 HOH A 133 418 133 HOH HOH . E 5 HOH A 134 419 134 HOH HOH . E 5 HOH A 135 420 135 HOH HOH . E 5 HOH A 136 421 136 HOH HOH . E 5 HOH A 137 422 137 HOH HOH . E 5 HOH A 138 423 138 HOH HOH . E 5 HOH A 139 424 139 HOH HOH . E 5 HOH A 140 425 140 HOH HOH . E 5 HOH A 141 426 141 HOH HOH . E 5 HOH A 142 427 142 HOH HOH . E 5 HOH A 143 428 143 HOH HOH . E 5 HOH A 144 429 144 HOH HOH . E 5 HOH A 145 430 145 HOH HOH . E 5 HOH A 146 431 146 HOH HOH . E 5 HOH A 147 432 147 HOH HOH . E 5 HOH A 148 433 148 HOH HOH . E 5 HOH A 149 434 149 HOH HOH . E 5 HOH A 150 435 150 HOH HOH . E 5 HOH A 151 436 151 HOH HOH . E 5 HOH A 152 437 152 HOH HOH . E 5 HOH A 153 438 153 HOH HOH . E 5 HOH A 154 439 154 HOH HOH . E 5 HOH A 155 440 155 HOH HOH . E 5 HOH A 156 441 156 HOH HOH . E 5 HOH A 157 442 157 HOH HOH . E 5 HOH A 158 443 158 HOH HOH . E 5 HOH A 159 444 159 HOH HOH . E 5 HOH A 160 445 160 HOH HOH . E 5 HOH A 161 446 161 HOH HOH . E 5 HOH A 162 447 162 HOH HOH . E 5 HOH A 163 448 163 HOH HOH . E 5 HOH A 164 449 164 HOH HOH . E 5 HOH A 165 450 165 HOH HOH . E 5 HOH A 166 451 166 HOH HOH . E 5 HOH A 167 452 167 HOH HOH . E 5 HOH A 168 453 168 HOH HOH . E 5 HOH A 169 454 169 HOH HOH . E 5 HOH A 170 455 170 HOH HOH . E 5 HOH A 171 456 171 HOH HOH . E 5 HOH A 172 457 172 HOH HOH . E 5 HOH A 173 458 173 HOH HOH . E 5 HOH A 174 459 174 HOH HOH . E 5 HOH A 175 460 175 HOH HOH . E 5 HOH A 176 461 176 HOH HOH . E 5 HOH A 177 462 177 HOH HOH . E 5 HOH A 178 463 178 HOH HOH . E 5 HOH A 179 464 179 HOH HOH . E 5 HOH A 180 465 180 HOH HOH . E 5 HOH A 181 466 181 HOH HOH . E 5 HOH A 182 467 182 HOH HOH . E 5 HOH A 183 468 183 HOH HOH . E 5 HOH A 184 469 184 HOH HOH . E 5 HOH A 185 470 185 HOH HOH . E 5 HOH A 186 471 186 HOH HOH . E 5 HOH A 187 472 187 HOH HOH . E 5 HOH A 188 473 188 HOH HOH . E 5 HOH A 189 474 189 HOH HOH . E 5 HOH A 190 475 190 HOH HOH . E 5 HOH A 191 476 191 HOH HOH . E 5 HOH A 192 477 192 HOH HOH . E 5 HOH A 193 478 193 HOH HOH . E 5 HOH A 194 479 194 HOH HOH . E 5 HOH A 195 480 195 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 14.593 65.566 15.334 1 64.44 ? C1 GOL 303 A 1 HETATM 2 O O1 GOL . . . D 4 13.446 66.328 15.022 1 67.08 ? O1 GOL 303 A 1 HETATM 3 C C2 GOL . . . D 4 15.343 66.257 16.465 1 59.29 ? C2 GOL 303 A 1 HETATM 4 O O2 GOL . . . D 4 16.305 67.135 15.925 1 61.85 ? O2 GOL 303 A 1 HETATM 5 C C3 GOL . . . D 4 14.338 67.066 17.266 1 49.83 ? C3 GOL 303 A 1 HETATM 6 O O3 GOL . . . D 4 14.957 67.626 18.397 1 47.27 ? O3 GOL 303 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #