data_3UYP # _model_server_result.job_id ldyjhBuPQ-0x81mcRcegsA _model_server_result.datetime_utc '2024-11-09 02:41:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3uyp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":254}' # _entry.id 3UYP # _exptl.entry_id 3UYP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3UYP _cell.length_a 106.6 _cell.length_b 155.88 _cell.length_c 55.91 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UYP _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 A CYS 23 1_555 A SG CYS 97 A CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 A SG CYS 155 A CYS 155 1_555 A SG CYS 224 A CYS 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf3 B SG CYS 8 B CYS 302 1_555 B SG CYS 39 B CYS 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3UYP _atom_sites.fract_transf_matrix[1][1] 0.009381 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006415 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017886 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 254 1 GOL GOL . D 3 GOL A 1 255 1 GOL GOL . E 4 SO4 A 1 256 1 SO4 SO4 . F 3 GOL A 1 257 1 GOL GOL . G 3 GOL A 1 258 1 GOL GOL . H 3 GOL A 1 259 1 GOL GOL . I 3 GOL A 1 260 1 GOL GOL . J 5 TRS B 1 1 1 TRS TRS . K 6 HOH A 1 261 261 HOH HOH . K 6 HOH A 2 262 1 HOH HOH . K 6 HOH A 3 263 2 HOH HOH . K 6 HOH A 4 264 3 HOH HOH . K 6 HOH A 5 265 265 HOH HOH . K 6 HOH A 6 266 266 HOH HOH . K 6 HOH A 7 267 267 HOH HOH . K 6 HOH A 8 268 5 HOH HOH . K 6 HOH A 9 269 269 HOH HOH . K 6 HOH A 10 270 270 HOH HOH . K 6 HOH A 11 271 271 HOH HOH . K 6 HOH A 12 272 272 HOH HOH . K 6 HOH A 13 273 6 HOH HOH . K 6 HOH A 14 274 274 HOH HOH . K 6 HOH A 15 275 275 HOH HOH . K 6 HOH A 16 276 8 HOH HOH . K 6 HOH A 17 277 9 HOH HOH . K 6 HOH A 18 278 278 HOH HOH . K 6 HOH A 19 279 10 HOH HOH . K 6 HOH A 20 280 280 HOH HOH . K 6 HOH A 21 281 11 HOH HOH . K 6 HOH A 22 282 282 HOH HOH . K 6 HOH A 23 283 12 HOH HOH . K 6 HOH A 24 284 284 HOH HOH . K 6 HOH A 25 285 285 HOH HOH . K 6 HOH A 26 286 286 HOH HOH . K 6 HOH A 27 287 14 HOH HOH . K 6 HOH A 28 288 16 HOH HOH . K 6 HOH A 29 289 289 HOH HOH . K 6 HOH A 30 290 20 HOH HOH . K 6 HOH A 31 291 291 HOH HOH . K 6 HOH A 32 292 292 HOH HOH . K 6 HOH A 33 293 293 HOH HOH . K 6 HOH A 34 294 294 HOH HOH . K 6 HOH A 35 295 21 HOH HOH . K 6 HOH A 36 296 22 HOH HOH . K 6 HOH A 37 297 23 HOH HOH . K 6 HOH A 38 298 24 HOH HOH . K 6 HOH A 39 299 299 HOH HOH . K 6 HOH A 40 300 25 HOH HOH . K 6 HOH A 41 301 301 HOH HOH . K 6 HOH A 42 302 302 HOH HOH . K 6 HOH A 43 303 303 HOH HOH . K 6 HOH A 44 304 26 HOH HOH . K 6 HOH A 45 305 305 HOH HOH . K 6 HOH A 46 306 27 HOH HOH . K 6 HOH A 47 307 307 HOH HOH . K 6 HOH A 48 308 308 HOH HOH . K 6 HOH A 49 309 309 HOH HOH . K 6 HOH A 50 310 310 HOH HOH . K 6 HOH A 51 311 28 HOH HOH . K 6 HOH A 52 312 29 HOH HOH . K 6 HOH A 53 313 30 HOH HOH . K 6 HOH A 54 314 31 HOH HOH . K 6 HOH A 55 315 33 HOH HOH . K 6 HOH A 56 316 34 HOH HOH . K 6 HOH A 57 317 35 HOH HOH . K 6 HOH A 58 318 36 HOH HOH . K 6 HOH A 59 319 37 HOH HOH . K 6 HOH A 60 320 38 HOH HOH . K 6 HOH A 61 321 40 HOH HOH . K 6 HOH A 62 322 41 HOH HOH . K 6 HOH A 63 323 42 HOH HOH . K 6 HOH A 64 324 45 HOH HOH . K 6 HOH A 65 325 46 HOH HOH . K 6 HOH A 66 326 51 HOH HOH . K 6 HOH A 67 327 52 HOH HOH . K 6 HOH A 68 328 54 HOH HOH . K 6 HOH A 69 329 55 HOH HOH . K 6 HOH A 70 330 57 HOH HOH . K 6 HOH A 71 331 58 HOH HOH . K 6 HOH A 72 332 59 HOH HOH . K 6 HOH A 73 333 60 HOH HOH . K 6 HOH A 74 334 62 HOH HOH . K 6 HOH A 75 335 63 HOH HOH . K 6 HOH A 76 336 64 HOH HOH . K 6 HOH A 77 337 65 HOH HOH . K 6 HOH A 78 338 66 HOH HOH . K 6 HOH A 79 339 68 HOH HOH . K 6 HOH A 80 340 70 HOH HOH . K 6 HOH A 81 341 71 HOH HOH . K 6 HOH A 82 342 73 HOH HOH . K 6 HOH A 83 343 74 HOH HOH . K 6 HOH A 84 344 75 HOH HOH . K 6 HOH A 85 345 76 HOH HOH . K 6 HOH A 86 346 77 HOH HOH . K 6 HOH A 87 347 78 HOH HOH . K 6 HOH A 88 348 81 HOH HOH . K 6 HOH A 89 349 82 HOH HOH . K 6 HOH A 90 350 83 HOH HOH . K 6 HOH A 91 351 84 HOH HOH . K 6 HOH A 92 352 85 HOH HOH . K 6 HOH A 93 353 86 HOH HOH . K 6 HOH A 94 354 87 HOH HOH . K 6 HOH A 95 355 88 HOH HOH . K 6 HOH A 96 356 89 HOH HOH . K 6 HOH A 97 357 90 HOH HOH . K 6 HOH A 98 358 91 HOH HOH . K 6 HOH A 99 359 92 HOH HOH . K 6 HOH A 100 360 94 HOH HOH . K 6 HOH A 101 361 96 HOH HOH . K 6 HOH A 102 362 97 HOH HOH . K 6 HOH A 103 363 98 HOH HOH . K 6 HOH A 104 364 99 HOH HOH . K 6 HOH A 105 365 100 HOH HOH . K 6 HOH A 106 366 103 HOH HOH . K 6 HOH A 107 367 104 HOH HOH . K 6 HOH A 108 368 106 HOH HOH . K 6 HOH A 109 369 107 HOH HOH . K 6 HOH A 110 370 108 HOH HOH . K 6 HOH A 111 371 111 HOH HOH . K 6 HOH A 112 372 112 HOH HOH . K 6 HOH A 113 373 113 HOH HOH . K 6 HOH A 114 374 114 HOH HOH . K 6 HOH A 115 375 115 HOH HOH . K 6 HOH A 116 376 116 HOH HOH . K 6 HOH A 117 377 118 HOH HOH . K 6 HOH A 118 378 120 HOH HOH . K 6 HOH A 119 379 121 HOH HOH . K 6 HOH A 120 380 124 HOH HOH . K 6 HOH A 121 381 125 HOH HOH . K 6 HOH A 122 382 127 HOH HOH . K 6 HOH A 123 383 130 HOH HOH . K 6 HOH A 124 384 131 HOH HOH . K 6 HOH A 125 385 132 HOH HOH . K 6 HOH A 126 386 135 HOH HOH . K 6 HOH A 127 387 137 HOH HOH . K 6 HOH A 128 388 138 HOH HOH . K 6 HOH A 129 389 139 HOH HOH . K 6 HOH A 130 390 140 HOH HOH . K 6 HOH A 131 391 141 HOH HOH . K 6 HOH A 132 392 142 HOH HOH . K 6 HOH A 133 393 145 HOH HOH . K 6 HOH A 134 394 146 HOH HOH . K 6 HOH A 135 395 149 HOH HOH . K 6 HOH A 136 396 150 HOH HOH . K 6 HOH A 137 397 152 HOH HOH . K 6 HOH A 138 398 154 HOH HOH . K 6 HOH A 139 399 155 HOH HOH . K 6 HOH A 140 400 157 HOH HOH . K 6 HOH A 141 401 159 HOH HOH . K 6 HOH A 142 402 160 HOH HOH . K 6 HOH A 143 403 161 HOH HOH . K 6 HOH A 144 404 162 HOH HOH . K 6 HOH A 145 405 163 HOH HOH . K 6 HOH A 146 406 164 HOH HOH . K 6 HOH A 147 407 165 HOH HOH . K 6 HOH A 148 408 167 HOH HOH . K 6 HOH A 149 409 168 HOH HOH . K 6 HOH A 150 410 169 HOH HOH . K 6 HOH A 151 411 171 HOH HOH . K 6 HOH A 152 412 172 HOH HOH . K 6 HOH A 153 413 173 HOH HOH . K 6 HOH A 154 414 174 HOH HOH . K 6 HOH A 155 415 175 HOH HOH . K 6 HOH A 156 416 176 HOH HOH . K 6 HOH A 157 417 177 HOH HOH . K 6 HOH A 158 418 178 HOH HOH . K 6 HOH A 159 419 179 HOH HOH . K 6 HOH A 160 420 182 HOH HOH . K 6 HOH A 161 421 183 HOH HOH . K 6 HOH A 162 422 184 HOH HOH . K 6 HOH A 163 423 185 HOH HOH . K 6 HOH A 164 424 189 HOH HOH . K 6 HOH A 165 425 190 HOH HOH . K 6 HOH A 166 426 192 HOH HOH . K 6 HOH A 167 427 193 HOH HOH . K 6 HOH A 168 428 195 HOH HOH . K 6 HOH A 169 429 196 HOH HOH . K 6 HOH A 170 430 197 HOH HOH . K 6 HOH A 171 431 199 HOH HOH . K 6 HOH A 172 432 200 HOH HOH . K 6 HOH A 173 433 202 HOH HOH . K 6 HOH A 174 434 203 HOH HOH . K 6 HOH A 175 435 204 HOH HOH . K 6 HOH A 176 436 205 HOH HOH . K 6 HOH A 177 437 206 HOH HOH . K 6 HOH A 178 438 208 HOH HOH . K 6 HOH A 179 439 209 HOH HOH . K 6 HOH A 180 440 211 HOH HOH . K 6 HOH A 181 441 212 HOH HOH . K 6 HOH A 182 442 213 HOH HOH . K 6 HOH A 183 443 218 HOH HOH . K 6 HOH A 184 444 219 HOH HOH . K 6 HOH A 185 445 220 HOH HOH . K 6 HOH A 186 446 221 HOH HOH . K 6 HOH A 187 447 223 HOH HOH . K 6 HOH A 188 448 224 HOH HOH . K 6 HOH A 189 449 226 HOH HOH . K 6 HOH A 190 450 227 HOH HOH . K 6 HOH A 191 451 228 HOH HOH . K 6 HOH A 192 452 232 HOH HOH . K 6 HOH A 193 453 235 HOH HOH . K 6 HOH A 194 454 236 HOH HOH . K 6 HOH A 195 455 237 HOH HOH . K 6 HOH A 196 456 238 HOH HOH . K 6 HOH A 197 457 240 HOH HOH . K 6 HOH A 198 458 241 HOH HOH . K 6 HOH A 199 459 245 HOH HOH . K 6 HOH A 200 460 246 HOH HOH . K 6 HOH A 201 461 248 HOH HOH . K 6 HOH A 202 462 249 HOH HOH . K 6 HOH A 203 463 250 HOH HOH . K 6 HOH A 204 464 254 HOH HOH . K 6 HOH A 205 465 255 HOH HOH . K 6 HOH A 206 466 257 HOH HOH . K 6 HOH A 207 467 258 HOH HOH . K 6 HOH A 208 468 259 HOH HOH . K 6 HOH A 209 469 67 HOH HOH . L 6 HOH B 1 7 7 HOH HOH . L 6 HOH B 2 13 13 HOH HOH . L 6 HOH B 3 15 15 HOH HOH . L 6 HOH B 4 17 17 HOH HOH . L 6 HOH B 5 18 18 HOH HOH . L 6 HOH B 6 32 32 HOH HOH . L 6 HOH B 7 39 39 HOH HOH . L 6 HOH B 8 43 43 HOH HOH . L 6 HOH B 9 44 44 HOH HOH . L 6 HOH B 10 47 47 HOH HOH . L 6 HOH B 11 49 49 HOH HOH . L 6 HOH B 12 50 50 HOH HOH . L 6 HOH B 13 53 53 HOH HOH . L 6 HOH B 14 56 56 HOH HOH . L 6 HOH B 15 79 79 HOH HOH . L 6 HOH B 16 80 80 HOH HOH . L 6 HOH B 17 93 93 HOH HOH . L 6 HOH B 18 95 95 HOH HOH . L 6 HOH B 19 105 105 HOH HOH . L 6 HOH B 20 110 110 HOH HOH . L 6 HOH B 21 119 119 HOH HOH . L 6 HOH B 22 123 123 HOH HOH . L 6 HOH B 23 126 126 HOH HOH . L 6 HOH B 24 128 128 HOH HOH . L 6 HOH B 25 133 133 HOH HOH . L 6 HOH B 26 134 134 HOH HOH . L 6 HOH B 27 136 136 HOH HOH . L 6 HOH B 28 143 143 HOH HOH . L 6 HOH B 29 144 144 HOH HOH . L 6 HOH B 30 147 147 HOH HOH . L 6 HOH B 31 151 151 HOH HOH . L 6 HOH B 32 153 153 HOH HOH . L 6 HOH B 33 158 158 HOH HOH . L 6 HOH B 34 166 166 HOH HOH . L 6 HOH B 35 170 170 HOH HOH . L 6 HOH B 36 181 181 HOH HOH . L 6 HOH B 37 186 186 HOH HOH . L 6 HOH B 38 188 188 HOH HOH . L 6 HOH B 39 191 191 HOH HOH . L 6 HOH B 40 194 194 HOH HOH . L 6 HOH B 41 198 198 HOH HOH . L 6 HOH B 42 207 207 HOH HOH . L 6 HOH B 43 210 210 HOH HOH . L 6 HOH B 44 214 214 HOH HOH . L 6 HOH B 45 215 215 HOH HOH . L 6 HOH B 46 216 216 HOH HOH . L 6 HOH B 47 217 217 HOH HOH . L 6 HOH B 48 229 229 HOH HOH . L 6 HOH B 49 231 231 HOH HOH . L 6 HOH B 50 234 234 HOH HOH . L 6 HOH B 51 239 239 HOH HOH . L 6 HOH B 52 242 242 HOH HOH . L 6 HOH B 53 247 247 HOH HOH . L 6 HOH B 54 251 251 HOH HOH . L 6 HOH B 55 253 253 HOH HOH . L 6 HOH B 56 256 256 HOH HOH . L 6 HOH B 57 260 260 HOH HOH . L 6 HOH B 58 262 262 HOH HOH . L 6 HOH B 59 263 263 HOH HOH . L 6 HOH B 60 264 264 HOH HOH . L 6 HOH B 61 273 273 HOH HOH . L 6 HOH B 62 281 281 HOH HOH . L 6 HOH B 63 283 283 HOH HOH . L 6 HOH B 64 287 287 HOH HOH . L 6 HOH B 65 409 298 HOH HOH . L 6 HOH B 66 410 300 HOH HOH . L 6 HOH B 67 411 304 HOH HOH . L 6 HOH B 68 412 306 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 19.526 22.9 2.923 1 58.78 ? C1 GOL 254 A 1 HETATM 2 O O1 GOL . . . C 3 19.378 21.766 2.042 1 57.99 ? O1 GOL 254 A 1 HETATM 3 C C2 GOL . . . C 3 20.977 23.132 3.351 1 58.51 ? C2 GOL 254 A 1 HETATM 4 O O2 GOL . . . C 3 21.788 22.822 2.252 1 59.26 ? O2 GOL 254 A 1 HETATM 5 C C3 GOL . . . C 3 21.275 24.595 3.742 1 58.7 ? C3 GOL 254 A 1 HETATM 6 O O3 GOL . . . C 3 21.501 25.472 2.617 1 58.64 ? O3 GOL 254 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #