data_3UYY # _model_server_result.job_id K2XVcQ_mVAy1V5Qnae8RXw _model_server_result.datetime_utc '2025-03-06 05:58:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3uyy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":372}' # _entry.id 3UYY # _exptl.entry_id 3UYY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.142 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3UYY _cell.length_a 56.366 _cell.length_b 90.704 _cell.length_c 155.469 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UYY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C8 H10 N O6 P' _chem_comp.formula_weight 247.142 _chem_comp.id PLP _chem_comp.mon_nstd_flag . _chem_comp.name "PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN B6 Phosphate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PLP doub 260 n y N1 C6 PLP sing 261 n y C2 C2A PLP sing 262 n n C2 C3 PLP sing 263 n y C2A H2A1 PLP sing 264 n n C2A H2A2 PLP sing 265 n n C2A H2A3 PLP sing 266 n n C3 O3 PLP sing 267 n n C3 C4 PLP doub 268 n y O3 HO3 PLP sing 269 n n C4 C4A PLP sing 270 n n C4 C5 PLP sing 271 n y C4A O4A PLP doub 272 n n C4A H4A PLP sing 273 n n C5 C6 PLP doub 274 n y C5 C5A PLP sing 275 n n C6 H6 PLP sing 276 n n C5A O4P PLP sing 277 n n C5A H5A1 PLP sing 278 n n C5A H5A2 PLP sing 279 n n O4P P PLP sing 280 n n P O1P PLP doub 281 n n P O2P PLP sing 282 n n P O3P PLP sing 283 n n O2P HOP2 PLP sing 284 n n O3P HOP3 PLP sing 285 n n # _atom_sites.entry_id 3UYY _atom_sites.fract_transf_matrix[1][1] 0.017741 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011025 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006432 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PLP A 1 371 371 PLP PLP . D 2 PLP B 1 372 372 PLP PLP . E 3 HOH A 1 359 1 HOH TIP . E 3 HOH A 2 360 2 HOH TIP . E 3 HOH A 3 361 3 HOH TIP . E 3 HOH A 4 362 5 HOH TIP . E 3 HOH A 5 363 19 HOH TIP . E 3 HOH A 6 364 22 HOH TIP . E 3 HOH A 7 365 23 HOH TIP . E 3 HOH A 8 366 26 HOH TIP . E 3 HOH A 9 367 34 HOH TIP . E 3 HOH A 10 368 40 HOH TIP . E 3 HOH A 11 369 49 HOH TIP . E 3 HOH A 12 370 53 HOH TIP . E 3 HOH A 13 372 54 HOH TIP . E 3 HOH A 14 373 56 HOH TIP . E 3 HOH A 15 374 58 HOH TIP . E 3 HOH A 16 375 59 HOH TIP . E 3 HOH A 17 376 60 HOH TIP . E 3 HOH A 18 377 61 HOH TIP . F 3 HOH B 1 359 4 HOH TIP . F 3 HOH B 2 360 6 HOH TIP . F 3 HOH B 3 361 7 HOH TIP . F 3 HOH B 4 362 8 HOH TIP . F 3 HOH B 5 363 9 HOH TIP . F 3 HOH B 6 364 10 HOH TIP . F 3 HOH B 7 365 11 HOH TIP . F 3 HOH B 8 366 12 HOH TIP . F 3 HOH B 9 367 13 HOH TIP . F 3 HOH B 10 368 14 HOH TIP . F 3 HOH B 11 369 15 HOH TIP . F 3 HOH B 12 370 16 HOH TIP . F 3 HOH B 13 371 17 HOH TIP . F 3 HOH B 14 373 18 HOH TIP . F 3 HOH B 15 374 20 HOH TIP . F 3 HOH B 16 375 21 HOH TIP . F 3 HOH B 17 376 24 HOH TIP . F 3 HOH B 18 377 25 HOH TIP . F 3 HOH B 19 378 27 HOH TIP . F 3 HOH B 20 379 28 HOH TIP . F 3 HOH B 21 380 29 HOH TIP . F 3 HOH B 22 381 30 HOH TIP . F 3 HOH B 23 382 31 HOH TIP . F 3 HOH B 24 383 32 HOH TIP . F 3 HOH B 25 384 33 HOH TIP . F 3 HOH B 26 385 35 HOH TIP . F 3 HOH B 27 386 36 HOH TIP . F 3 HOH B 28 387 37 HOH TIP . F 3 HOH B 29 388 38 HOH TIP . F 3 HOH B 30 389 39 HOH TIP . F 3 HOH B 31 390 41 HOH TIP . F 3 HOH B 32 391 42 HOH TIP . F 3 HOH B 33 392 43 HOH TIP . F 3 HOH B 34 393 44 HOH TIP . F 3 HOH B 35 394 45 HOH TIP . F 3 HOH B 36 395 46 HOH TIP . F 3 HOH B 37 396 47 HOH TIP . F 3 HOH B 38 397 48 HOH TIP . F 3 HOH B 39 398 50 HOH TIP . F 3 HOH B 40 399 51 HOH TIP . F 3 HOH B 41 400 52 HOH TIP . F 3 HOH B 42 401 55 HOH TIP . F 3 HOH B 43 402 57 HOH TIP . F 3 HOH B 44 403 62 HOH TIP . F 3 HOH B 45 404 63 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLP . . . D 2 21.391 52.178 12.386 1 27.17 ? N1 PLP 372 B 1 HETATM 2 C C2 PLP . . . D 2 20.439 51.196 12.23 1 28.01 ? C2 PLP 372 B 1 HETATM 3 C C2A PLP . . . D 2 20.624 50.188 11.092 1 30.2 ? C2A PLP 372 B 1 HETATM 4 C C3 PLP . . . D 2 19.334 51.166 13.133 1 33.15 ? C3 PLP 372 B 1 HETATM 5 O O3 PLP . . . D 2 18.395 50.208 12.993 1 32.42 ? O3 PLP 372 B 1 HETATM 6 C C4 PLP . . . D 2 19.222 52.153 14.19 1 33.32 ? C4 PLP 372 B 1 HETATM 7 C C4A PLP . . . D 2 17.967 52.065 15.161 1 34.05 ? C4A PLP 372 B 1 HETATM 8 C C5 PLP . . . D 2 20.285 53.176 14.289 1 30.93 ? C5 PLP 372 B 1 HETATM 9 C C6 PLP . . . D 2 21.342 53.153 13.378 1 26.58 ? C6 PLP 372 B 1 HETATM 10 C C5A PLP . . . D 2 20.354 54.283 15.301 1 21.76 ? C5A PLP 372 B 1 HETATM 11 O O4P PLP . . . D 2 19.628 55.418 14.963 1 25.56 ? O4P PLP 372 B 1 HETATM 12 P P PLP . . . D 2 18.972 56.314 16.085 1 18.44 ? P PLP 372 B 1 HETATM 13 O O1P PLP . . . D 2 18.012 55.537 16.851 1 26.7 ? O1P PLP 372 B 1 HETATM 14 O O2P PLP . . . D 2 18.265 57.411 15.232 1 23.73 ? O2P PLP 372 B 1 HETATM 15 O O3P PLP . . . D 2 20.062 56.993 16.838 1 46.3 ? O3P PLP 372 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 15 #