data_3UZB # _model_server_result.job_id D8vOQgJWksSJFEsn4TOh6g _model_server_result.datetime_utc '2025-03-06 05:54:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3uzb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":374}' # _entry.id 3UZB # _exptl.entry_id 3UZB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.142 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.19 _cell.angle_gamma 90 _cell.entry_id 3UZB _cell.length_a 56.11 _cell.length_b 172.58 _cell.length_c 80.08 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UZB _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,M,N 1 1 C,D,I,J,K,L,O,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # _chem_comp.formula 'C8 H10 N O6 P' _chem_comp.formula_weight 247.142 _chem_comp.id PLP _chem_comp.mon_nstd_flag . _chem_comp.name "PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN B6 Phosphate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PLP doub 278 n y N1 C6 PLP sing 279 n y C2 C2A PLP sing 280 n n C2 C3 PLP sing 281 n y C2A H2A1 PLP sing 282 n n C2A H2A2 PLP sing 283 n n C2A H2A3 PLP sing 284 n n C3 O3 PLP sing 285 n n C3 C4 PLP doub 286 n y O3 HO3 PLP sing 287 n n C4 C4A PLP sing 288 n n C4 C5 PLP sing 289 n y C4A O4A PLP doub 290 n n C4A H4A PLP sing 291 n n C5 C6 PLP doub 292 n y C5 C5A PLP sing 293 n n C6 H6 PLP sing 294 n n C5A O4P PLP sing 295 n n C5A H5A1 PLP sing 296 n n C5A H5A2 PLP sing 297 n n O4P P PLP sing 298 n n P O1P PLP doub 299 n n P O2P PLP sing 300 n n P O3P PLP sing 301 n n O2P HOP2 PLP sing 302 n n O3P HOP3 PLP sing 303 n n # _atom_sites.entry_id 3UZB _atom_sites.fract_transf_matrix[1][1] 0.017822 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005856 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005794 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013144 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PLP A 1 371 371 PLP PLP . F 3 COI A 1 1517 1517 COI COI . G 2 PLP B 1 372 372 PLP PLP . H 3 COI B 1 2517 2517 COI COI . I 2 PLP C 1 373 373 PLP PLP . J 3 COI C 1 3517 3517 COI COI . K 2 PLP D 1 374 374 PLP PLP . L 3 COI D 1 4517 4517 COI COI . M 4 HOH A 1 359 4 HOH TIP . M 4 HOH A 2 360 7 HOH TIP . M 4 HOH A 3 361 8 HOH TIP . M 4 HOH A 4 362 10 HOH TIP . M 4 HOH A 5 363 15 HOH TIP . M 4 HOH A 6 364 17 HOH TIP . M 4 HOH A 7 365 18 HOH TIP . M 4 HOH A 8 366 20 HOH TIP . M 4 HOH A 9 367 23 HOH TIP . M 4 HOH A 10 368 24 HOH TIP . M 4 HOH A 11 369 27 HOH TIP . M 4 HOH A 12 370 28 HOH TIP . M 4 HOH A 13 372 37 HOH TIP . M 4 HOH A 14 373 44 HOH TIP . M 4 HOH A 15 374 56 HOH TIP . M 4 HOH A 16 375 57 HOH TIP . M 4 HOH A 17 376 59 HOH TIP . M 4 HOH A 18 377 60 HOH TIP . M 4 HOH A 19 378 62 HOH TIP . M 4 HOH A 20 379 67 HOH TIP . M 4 HOH A 21 380 70 HOH TIP . M 4 HOH A 22 381 72 HOH TIP . M 4 HOH A 23 382 76 HOH TIP . M 4 HOH A 24 383 78 HOH TIP . M 4 HOH A 25 384 79 HOH TIP . M 4 HOH A 26 385 86 HOH TIP . M 4 HOH A 27 386 87 HOH TIP . M 4 HOH A 28 387 88 HOH TIP . M 4 HOH A 29 388 89 HOH TIP . M 4 HOH A 30 389 94 HOH TIP . M 4 HOH A 31 390 95 HOH TIP . M 4 HOH A 32 391 97 HOH TIP . M 4 HOH A 33 392 100 HOH TIP . M 4 HOH A 34 393 103 HOH TIP . M 4 HOH A 35 394 104 HOH TIP . M 4 HOH A 36 395 107 HOH TIP . M 4 HOH A 37 396 109 HOH TIP . M 4 HOH A 38 397 112 HOH TIP . M 4 HOH A 39 398 113 HOH TIP . M 4 HOH A 40 399 114 HOH TIP . M 4 HOH A 41 400 130 HOH TIP . M 4 HOH A 42 401 131 HOH TIP . M 4 HOH A 43 402 133 HOH TIP . M 4 HOH A 44 403 136 HOH TIP . M 4 HOH A 45 404 139 HOH TIP . M 4 HOH A 46 405 141 HOH TIP . M 4 HOH A 47 406 142 HOH TIP . M 4 HOH A 48 407 143 HOH TIP . M 4 HOH A 49 408 148 HOH TIP . M 4 HOH A 50 409 149 HOH TIP . M 4 HOH A 51 410 150 HOH TIP . M 4 HOH A 52 411 152 HOH TIP . M 4 HOH A 53 412 159 HOH TIP . M 4 HOH A 54 413 166 HOH TIP . M 4 HOH A 55 414 173 HOH TIP . M 4 HOH A 56 415 175 HOH TIP . M 4 HOH A 57 416 177 HOH TIP . N 4 HOH B 1 359 1 HOH TIP . N 4 HOH B 2 360 5 HOH TIP . N 4 HOH B 3 361 16 HOH TIP . N 4 HOH B 4 362 22 HOH TIP . N 4 HOH B 5 363 25 HOH TIP . N 4 HOH B 6 364 26 HOH TIP . N 4 HOH B 7 365 33 HOH TIP . N 4 HOH B 8 366 36 HOH TIP . N 4 HOH B 9 367 41 HOH TIP . N 4 HOH B 10 368 43 HOH TIP . N 4 HOH B 11 369 45 HOH TIP . N 4 HOH B 12 370 46 HOH TIP . N 4 HOH B 13 371 49 HOH TIP . N 4 HOH B 14 373 50 HOH TIP . N 4 HOH B 15 374 58 HOH TIP . N 4 HOH B 16 375 75 HOH TIP . N 4 HOH B 17 376 77 HOH TIP . N 4 HOH B 18 377 80 HOH TIP . N 4 HOH B 19 378 82 HOH TIP . N 4 HOH B 20 379 101 HOH TIP . N 4 HOH B 21 380 105 HOH TIP . N 4 HOH B 22 381 126 HOH TIP . N 4 HOH B 23 382 127 HOH TIP . N 4 HOH B 24 383 129 HOH TIP . N 4 HOH B 25 384 135 HOH TIP . N 4 HOH B 26 385 138 HOH TIP . N 4 HOH B 27 386 144 HOH TIP . N 4 HOH B 28 387 146 HOH TIP . N 4 HOH B 29 388 147 HOH TIP . N 4 HOH B 30 389 153 HOH TIP . N 4 HOH B 31 390 163 HOH TIP . N 4 HOH B 32 391 167 HOH TIP . N 4 HOH B 33 392 170 HOH TIP . N 4 HOH B 34 393 171 HOH TIP . N 4 HOH B 35 394 174 HOH TIP . O 4 HOH C 1 359 2 HOH TIP . O 4 HOH C 2 360 6 HOH TIP . O 4 HOH C 3 361 9 HOH TIP . O 4 HOH C 4 362 11 HOH TIP . O 4 HOH C 5 363 12 HOH TIP . O 4 HOH C 6 364 13 HOH TIP . O 4 HOH C 7 365 19 HOH TIP . O 4 HOH C 8 366 21 HOH TIP . O 4 HOH C 9 367 30 HOH TIP . O 4 HOH C 10 368 31 HOH TIP . O 4 HOH C 11 369 34 HOH TIP . O 4 HOH C 12 370 38 HOH TIP . O 4 HOH C 13 371 39 HOH TIP . O 4 HOH C 14 372 47 HOH TIP . O 4 HOH C 15 374 52 HOH TIP . O 4 HOH C 16 375 53 HOH TIP . O 4 HOH C 17 376 54 HOH TIP . O 4 HOH C 18 377 68 HOH TIP . O 4 HOH C 19 378 74 HOH TIP . O 4 HOH C 20 379 81 HOH TIP . O 4 HOH C 21 380 83 HOH TIP . O 4 HOH C 22 381 90 HOH TIP . O 4 HOH C 23 382 92 HOH TIP . O 4 HOH C 24 383 96 HOH TIP . O 4 HOH C 25 384 98 HOH TIP . O 4 HOH C 26 385 99 HOH TIP . O 4 HOH C 27 386 102 HOH TIP . O 4 HOH C 28 387 110 HOH TIP . O 4 HOH C 29 388 111 HOH TIP . O 4 HOH C 30 389 115 HOH TIP . O 4 HOH C 31 390 116 HOH TIP . O 4 HOH C 32 391 117 HOH TIP . O 4 HOH C 33 392 118 HOH TIP . O 4 HOH C 34 393 121 HOH TIP . O 4 HOH C 35 394 123 HOH TIP . O 4 HOH C 36 395 134 HOH TIP . O 4 HOH C 37 396 145 HOH TIP . O 4 HOH C 38 397 151 HOH TIP . O 4 HOH C 39 398 154 HOH TIP . O 4 HOH C 40 399 155 HOH TIP . O 4 HOH C 41 400 157 HOH TIP . O 4 HOH C 42 401 158 HOH TIP . O 4 HOH C 43 402 160 HOH TIP . O 4 HOH C 44 403 161 HOH TIP . O 4 HOH C 45 404 164 HOH TIP . O 4 HOH C 46 405 165 HOH TIP . O 4 HOH C 47 406 168 HOH TIP . O 4 HOH C 48 407 169 HOH TIP . P 4 HOH D 1 359 3 HOH TIP . P 4 HOH D 2 360 14 HOH TIP . P 4 HOH D 3 361 29 HOH TIP . P 4 HOH D 4 362 32 HOH TIP . P 4 HOH D 5 363 35 HOH TIP . P 4 HOH D 6 364 40 HOH TIP . P 4 HOH D 7 365 42 HOH TIP . P 4 HOH D 8 366 48 HOH TIP . P 4 HOH D 9 367 51 HOH TIP . P 4 HOH D 10 368 55 HOH TIP . P 4 HOH D 11 369 61 HOH TIP . P 4 HOH D 12 370 63 HOH TIP . P 4 HOH D 13 371 64 HOH TIP . P 4 HOH D 14 372 65 HOH TIP . P 4 HOH D 15 373 66 HOH TIP . P 4 HOH D 16 375 69 HOH TIP . P 4 HOH D 17 376 71 HOH TIP . P 4 HOH D 18 377 85 HOH TIP . P 4 HOH D 19 378 91 HOH TIP . P 4 HOH D 20 379 93 HOH TIP . P 4 HOH D 21 380 106 HOH TIP . P 4 HOH D 22 381 108 HOH TIP . P 4 HOH D 23 382 119 HOH TIP . P 4 HOH D 24 383 120 HOH TIP . P 4 HOH D 25 384 122 HOH TIP . P 4 HOH D 26 385 124 HOH TIP . P 4 HOH D 27 386 125 HOH TIP . P 4 HOH D 28 387 128 HOH TIP . P 4 HOH D 29 388 132 HOH TIP . P 4 HOH D 30 389 140 HOH TIP . P 4 HOH D 31 390 156 HOH TIP . P 4 HOH D 32 391 172 HOH TIP . P 4 HOH D 33 392 176 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLP . . . K 2 -33.207 11.047 44.368 1 27.51 ? N1 PLP 374 D 1 HETATM 2 C C2 PLP . . . K 2 -33.927 10.624 43.277 1 27.43 ? C2 PLP 374 D 1 HETATM 3 C C2A PLP . . . K 2 -33.239 9.721 42.247 1 36.87 ? C2A PLP 374 D 1 HETATM 4 C C3 PLP . . . K 2 -35.257 11.039 43.156 1 37.07 ? C3 PLP 374 D 1 HETATM 5 O O3 PLP . . . K 2 -35.98 10.637 42.094 1 35.24 ? O3 PLP 374 D 1 HETATM 6 C C4 PLP . . . K 2 -35.838 11.881 44.149 1 35.47 ? C4 PLP 374 D 1 HETATM 7 C C4A PLP . . . K 2 -37.293 12.288 43.935 1 37.79 ? C4A PLP 374 D 1 HETATM 8 C C5 PLP . . . K 2 -35.028 12.299 45.292 1 31.37 ? C5 PLP 374 D 1 HETATM 9 C C6 PLP . . . K 2 -33.72 11.864 45.365 1 25.11 ? C6 PLP 374 D 1 HETATM 10 C C5A PLP . . . K 2 -35.468 13.184 46.446 1 28.93 ? C5A PLP 374 D 1 HETATM 11 O O4P PLP . . . K 2 -36.647 13.898 46.294 1 29.28 ? O4P PLP 374 D 1 HETATM 12 P P PLP . . . K 2 -36.953 15.218 47.102 1 24.48 ? P PLP 374 D 1 HETATM 13 O O1P PLP . . . K 2 -37.003 14.982 48.52 1 29.34 ? O1P PLP 374 D 1 HETATM 14 O O2P PLP . . . K 2 -38.334 15.549 46.542 1 22.52 ? O2P PLP 374 D 1 HETATM 15 O O3P PLP . . . K 2 -36.045 16.286 46.615 1 30.87 ? O3P PLP 374 D 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 15 #