data_3UZD # _model_server_result.job_id PwSLawvpSCsZTxVM8hZUCQ _model_server_result.datetime_utc '2025-06-27 12:03:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3uzd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":101}' # _entry.id 3UZD # _exptl.entry_id 3UZD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.005 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NITRATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3UZD _cell.length_a 60.511 _cell.length_b 79.23 _cell.length_c 122.232 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UZD _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA octameric 8 software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1,2,3,4 A,B,C,D,E,F,G,H 2 1,3 A,B,C,D,E,F,G,H 3 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C PRO 7 B PRO 7 1_555 B N SEP 8 B SEP 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale2 B C SEP 8 B SEP 8 1_555 B N LEU 9 B LEU 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? metalc ? metalc1 E MG MG . A MG 303 1_555 G O HOH . A HOH 459 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.738 ? metalc ? metalc2 E MG MG . A MG 303 1_555 G O HOH . A HOH 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? # _chem_comp.formula 'N O3 -1' _chem_comp.formula_weight 62.005 _chem_comp.id NO3 _chem_comp.mon_nstd_flag . _chem_comp.name 'NITRATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N O1 NO3 doub 237 n n N O2 NO3 sing 238 n n N O3 NO3 sing 239 n n # _atom_sites.entry_id 3UZD _atom_sites.fract_transf_matrix[1][1] 0.016526 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012621 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008181 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NO3 A 1 301 1 NO3 NO3 . D 3 NO3 A 1 302 2 NO3 NO3 . E 4 MG A 1 303 5 MG MG . F 3 NO3 B 1 101 4 NO3 NO3 . G 5 HOH A 1 401 251 HOH HOH . G 5 HOH A 2 402 2 HOH HOH . G 5 HOH A 3 403 3 HOH HOH . G 5 HOH A 4 404 4 HOH HOH . G 5 HOH A 5 405 5 HOH HOH . G 5 HOH A 6 406 6 HOH HOH . G 5 HOH A 7 407 7 HOH HOH . G 5 HOH A 8 408 9 HOH HOH . G 5 HOH A 9 409 10 HOH HOH . G 5 HOH A 10 410 11 HOH HOH . G 5 HOH A 11 411 12 HOH HOH . G 5 HOH A 12 412 14 HOH HOH . G 5 HOH A 13 413 15 HOH HOH . G 5 HOH A 14 414 16 HOH HOH . G 5 HOH A 15 415 17 HOH HOH . G 5 HOH A 16 416 18 HOH HOH . G 5 HOH A 17 417 19 HOH HOH . G 5 HOH A 18 418 20 HOH HOH . G 5 HOH A 19 419 21 HOH HOH . G 5 HOH A 20 420 22 HOH HOH . G 5 HOH A 21 421 23 HOH HOH . G 5 HOH A 22 422 24 HOH HOH . G 5 HOH A 23 423 25 HOH HOH . G 5 HOH A 24 424 26 HOH HOH . G 5 HOH A 25 425 27 HOH HOH . G 5 HOH A 26 426 28 HOH HOH . G 5 HOH A 27 427 30 HOH HOH . G 5 HOH A 28 428 31 HOH HOH . G 5 HOH A 29 429 32 HOH HOH . G 5 HOH A 30 430 33 HOH HOH . G 5 HOH A 31 431 34 HOH HOH . G 5 HOH A 32 432 36 HOH HOH . G 5 HOH A 33 433 37 HOH HOH . G 5 HOH A 34 434 38 HOH HOH . G 5 HOH A 35 435 39 HOH HOH . G 5 HOH A 36 436 41 HOH HOH . G 5 HOH A 37 437 42 HOH HOH . G 5 HOH A 38 438 43 HOH HOH . G 5 HOH A 39 439 44 HOH HOH . G 5 HOH A 40 440 45 HOH HOH . G 5 HOH A 41 441 46 HOH HOH . G 5 HOH A 42 442 48 HOH HOH . G 5 HOH A 43 443 49 HOH HOH . G 5 HOH A 44 444 50 HOH HOH . G 5 HOH A 45 445 51 HOH HOH . G 5 HOH A 46 446 52 HOH HOH . G 5 HOH A 47 447 53 HOH HOH . G 5 HOH A 48 448 54 HOH HOH . G 5 HOH A 49 449 55 HOH HOH . G 5 HOH A 50 450 56 HOH HOH . G 5 HOH A 51 451 57 HOH HOH . G 5 HOH A 52 452 58 HOH HOH . G 5 HOH A 53 453 59 HOH HOH . G 5 HOH A 54 454 60 HOH HOH . G 5 HOH A 55 455 61 HOH HOH . G 5 HOH A 56 456 62 HOH HOH . G 5 HOH A 57 457 63 HOH HOH . G 5 HOH A 58 458 64 HOH HOH . G 5 HOH A 59 459 65 HOH HOH . G 5 HOH A 60 460 66 HOH HOH . G 5 HOH A 61 461 67 HOH HOH . G 5 HOH A 62 462 68 HOH HOH . G 5 HOH A 63 463 69 HOH HOH . G 5 HOH A 64 464 70 HOH HOH . G 5 HOH A 65 465 71 HOH HOH . G 5 HOH A 66 466 72 HOH HOH . G 5 HOH A 67 467 73 HOH HOH . G 5 HOH A 68 468 74 HOH HOH . G 5 HOH A 69 469 75 HOH HOH . G 5 HOH A 70 470 76 HOH HOH . G 5 HOH A 71 471 77 HOH HOH . G 5 HOH A 72 472 78 HOH HOH . G 5 HOH A 73 473 79 HOH HOH . G 5 HOH A 74 474 80 HOH HOH . G 5 HOH A 75 475 81 HOH HOH . G 5 HOH A 76 476 82 HOH HOH . G 5 HOH A 77 477 83 HOH HOH . G 5 HOH A 78 478 84 HOH HOH . G 5 HOH A 79 479 85 HOH HOH . G 5 HOH A 80 480 86 HOH HOH . G 5 HOH A 81 481 87 HOH HOH . G 5 HOH A 82 482 88 HOH HOH . G 5 HOH A 83 483 89 HOH HOH . G 5 HOH A 84 484 90 HOH HOH . G 5 HOH A 85 485 91 HOH HOH . G 5 HOH A 86 486 92 HOH HOH . G 5 HOH A 87 487 93 HOH HOH . G 5 HOH A 88 488 94 HOH HOH . G 5 HOH A 89 489 95 HOH HOH . G 5 HOH A 90 490 96 HOH HOH . G 5 HOH A 91 491 97 HOH HOH . G 5 HOH A 92 492 98 HOH HOH . G 5 HOH A 93 493 99 HOH HOH . G 5 HOH A 94 494 100 HOH HOH . G 5 HOH A 95 495 101 HOH HOH . G 5 HOH A 96 496 102 HOH HOH . G 5 HOH A 97 497 103 HOH HOH . G 5 HOH A 98 498 104 HOH HOH . G 5 HOH A 99 499 105 HOH HOH . G 5 HOH A 100 500 108 HOH HOH . G 5 HOH A 101 501 109 HOH HOH . G 5 HOH A 102 502 110 HOH HOH . G 5 HOH A 103 503 111 HOH HOH . G 5 HOH A 104 504 112 HOH HOH . G 5 HOH A 105 505 113 HOH HOH . G 5 HOH A 106 506 114 HOH HOH . G 5 HOH A 107 507 115 HOH HOH . G 5 HOH A 108 508 116 HOH HOH . G 5 HOH A 109 509 117 HOH HOH . G 5 HOH A 110 510 118 HOH HOH . G 5 HOH A 111 511 119 HOH HOH . G 5 HOH A 112 512 121 HOH HOH . G 5 HOH A 113 513 122 HOH HOH . G 5 HOH A 114 514 123 HOH HOH . G 5 HOH A 115 515 124 HOH HOH . G 5 HOH A 116 516 125 HOH HOH . G 5 HOH A 117 517 126 HOH HOH . G 5 HOH A 118 518 127 HOH HOH . G 5 HOH A 119 519 128 HOH HOH . G 5 HOH A 120 520 129 HOH HOH . G 5 HOH A 121 521 130 HOH HOH . G 5 HOH A 122 522 131 HOH HOH . G 5 HOH A 123 523 132 HOH HOH . G 5 HOH A 124 524 133 HOH HOH . G 5 HOH A 125 525 134 HOH HOH . G 5 HOH A 126 526 136 HOH HOH . G 5 HOH A 127 527 137 HOH HOH . G 5 HOH A 128 528 379 HOH HOH . H 5 HOH B 1 201 1 HOH HOH . H 5 HOH B 2 202 8 HOH HOH . H 5 HOH B 3 203 13 HOH HOH . H 5 HOH B 4 204 29 HOH HOH . H 5 HOH B 5 205 35 HOH HOH . H 5 HOH B 6 206 40 HOH HOH . H 5 HOH B 7 207 47 HOH HOH . H 5 HOH B 8 208 106 HOH HOH . H 5 HOH B 9 209 107 HOH HOH . H 5 HOH B 10 210 120 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N NO3 . . . F 3 16.287 10.485 9.972 1 63.01 ? N NO3 101 B 1 HETATM 2 O O1 NO3 . . . F 3 15.28 9.583 9.584 1 61.69 ? O1 NO3 101 B 1 HETATM 3 O O2 NO3 . . . F 3 16.61 11.589 9.147 1 62.92 ? O2 NO3 101 B 1 HETATM 4 O O3 NO3 . . . F 3 16.948 10.279 11.205 1 62.47 ? O3 NO3 101 B 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 371 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #