data_3UZO # _model_server_result.job_id Sf23-PVm1Tdl-b6vYi1n2g _model_server_result.datetime_utc '2025-01-14 09:44:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3uzo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":371}' # _entry.id 3UZO # _exptl.entry_id 3UZO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.142 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.98 _cell.angle_gamma 90 _cell.entry_id 3UZO _cell.length_a 55.881 _cell.length_b 75.98 _cell.length_c 79.123 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UZO _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C8 H10 N O6 P' _chem_comp.formula_weight 247.142 _chem_comp.id PLP _chem_comp.mon_nstd_flag . _chem_comp.name "PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN B6 Phosphate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PLP doub 260 n y N1 C6 PLP sing 261 n y C2 C2A PLP sing 262 n n C2 C3 PLP sing 263 n y C2A H2A1 PLP sing 264 n n C2A H2A2 PLP sing 265 n n C2A H2A3 PLP sing 266 n n C3 O3 PLP sing 267 n n C3 C4 PLP doub 268 n y O3 HO3 PLP sing 269 n n C4 C4A PLP sing 270 n n C4 C5 PLP sing 271 n y C4A O4A PLP doub 272 n n C4A H4A PLP sing 273 n n C5 C6 PLP doub 274 n y C5 C5A PLP sing 275 n n C6 H6 PLP sing 276 n n C5A O4P PLP sing 277 n n C5A H5A1 PLP sing 278 n n C5A H5A2 PLP sing 279 n n O4P P PLP sing 280 n n P O1P PLP doub 281 n n P O2P PLP sing 282 n n P O3P PLP sing 283 n n O2P HOP2 PLP sing 284 n n O3P HOP3 PLP sing 285 n n # _atom_sites.entry_id 3UZO _atom_sites.fract_transf_matrix[1][1] 0.017895 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005125 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013161 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013147 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PLP A 1 371 371 PLP PLP . D 3 GLU A 1 600 600 GLU GLU . E 2 PLP B 1 372 372 PLP PLP . F 3 GLU B 1 500 500 GLU GLU . G 4 HOH A 1 359 1 HOH TIP . G 4 HOH A 2 360 2 HOH TIP . G 4 HOH A 3 361 3 HOH TIP . G 4 HOH A 4 362 4 HOH TIP . G 4 HOH A 5 363 5 HOH TIP . G 4 HOH A 6 364 6 HOH TIP . G 4 HOH A 7 365 8 HOH TIP . G 4 HOH A 8 366 10 HOH TIP . G 4 HOH A 9 367 11 HOH TIP . G 4 HOH A 10 368 13 HOH TIP . G 4 HOH A 11 369 15 HOH TIP . G 4 HOH A 12 370 16 HOH TIP . G 4 HOH A 13 372 17 HOH TIP . G 4 HOH A 14 373 18 HOH TIP . G 4 HOH A 15 374 20 HOH TIP . G 4 HOH A 16 375 21 HOH TIP . G 4 HOH A 17 376 22 HOH TIP . G 4 HOH A 18 377 23 HOH TIP . G 4 HOH A 19 378 24 HOH TIP . G 4 HOH A 20 379 28 HOH TIP . G 4 HOH A 21 380 29 HOH TIP . G 4 HOH A 22 381 31 HOH TIP . G 4 HOH A 23 382 32 HOH TIP . G 4 HOH A 24 383 34 HOH TIP . G 4 HOH A 25 384 36 HOH TIP . G 4 HOH A 26 385 38 HOH TIP . G 4 HOH A 27 386 39 HOH TIP . G 4 HOH A 28 387 40 HOH TIP . G 4 HOH A 29 388 41 HOH TIP . G 4 HOH A 30 389 42 HOH TIP . G 4 HOH A 31 390 43 HOH TIP . G 4 HOH A 32 391 45 HOH TIP . G 4 HOH A 33 392 46 HOH TIP . G 4 HOH A 34 393 47 HOH TIP . G 4 HOH A 35 394 48 HOH TIP . G 4 HOH A 36 395 49 HOH TIP . G 4 HOH A 37 396 50 HOH TIP . G 4 HOH A 38 397 51 HOH TIP . G 4 HOH A 39 398 52 HOH TIP . G 4 HOH A 40 399 53 HOH TIP . G 4 HOH A 41 400 54 HOH TIP . G 4 HOH A 42 401 55 HOH TIP . G 4 HOH A 43 402 57 HOH TIP . G 4 HOH A 44 403 58 HOH TIP . G 4 HOH A 45 404 59 HOH TIP . G 4 HOH A 46 405 60 HOH TIP . G 4 HOH A 47 406 61 HOH TIP . G 4 HOH A 48 407 63 HOH TIP . G 4 HOH A 49 408 64 HOH TIP . G 4 HOH A 50 409 65 HOH TIP . G 4 HOH A 51 410 68 HOH TIP . G 4 HOH A 52 411 69 HOH TIP . G 4 HOH A 53 412 70 HOH TIP . G 4 HOH A 54 413 71 HOH TIP . G 4 HOH A 55 414 72 HOH TIP . G 4 HOH A 56 415 75 HOH TIP . G 4 HOH A 57 416 76 HOH TIP . G 4 HOH A 58 417 77 HOH TIP . G 4 HOH A 59 418 81 HOH TIP . G 4 HOH A 60 419 82 HOH TIP . G 4 HOH A 61 420 83 HOH TIP . G 4 HOH A 62 421 85 HOH TIP . G 4 HOH A 63 422 86 HOH TIP . G 4 HOH A 64 423 87 HOH TIP . G 4 HOH A 65 424 88 HOH TIP . G 4 HOH A 66 425 89 HOH TIP . G 4 HOH A 67 426 90 HOH TIP . G 4 HOH A 68 427 91 HOH TIP . G 4 HOH A 69 428 92 HOH TIP . G 4 HOH A 70 429 94 HOH TIP . G 4 HOH A 71 430 95 HOH TIP . G 4 HOH A 72 431 97 HOH TIP . G 4 HOH A 73 432 98 HOH TIP . G 4 HOH A 74 433 99 HOH TIP . G 4 HOH A 75 434 100 HOH TIP . G 4 HOH A 76 435 103 HOH TIP . G 4 HOH A 77 436 105 HOH TIP . G 4 HOH A 78 437 109 HOH TIP . G 4 HOH A 79 438 110 HOH TIP . G 4 HOH A 80 439 111 HOH TIP . G 4 HOH A 81 440 112 HOH TIP . G 4 HOH A 82 441 113 HOH TIP . G 4 HOH A 83 442 115 HOH TIP . G 4 HOH A 84 443 117 HOH TIP . G 4 HOH A 85 444 118 HOH TIP . G 4 HOH A 86 445 121 HOH TIP . G 4 HOH A 87 446 122 HOH TIP . G 4 HOH A 88 447 123 HOH TIP . G 4 HOH A 89 448 124 HOH TIP . G 4 HOH A 90 449 125 HOH TIP . G 4 HOH A 91 450 127 HOH TIP . G 4 HOH A 92 451 130 HOH TIP . G 4 HOH A 93 452 131 HOH TIP . G 4 HOH A 94 453 132 HOH TIP . G 4 HOH A 95 454 133 HOH TIP . G 4 HOH A 96 455 134 HOH TIP . G 4 HOH A 97 456 135 HOH TIP . G 4 HOH A 98 457 136 HOH TIP . G 4 HOH A 99 458 137 HOH TIP . G 4 HOH A 100 459 138 HOH TIP . G 4 HOH A 101 460 141 HOH TIP . G 4 HOH A 102 461 143 HOH TIP . G 4 HOH A 103 462 144 HOH TIP . G 4 HOH A 104 463 145 HOH TIP . G 4 HOH A 105 464 146 HOH TIP . G 4 HOH A 106 465 147 HOH TIP . G 4 HOH A 107 466 148 HOH TIP . G 4 HOH A 108 467 151 HOH TIP . G 4 HOH A 109 468 154 HOH TIP . G 4 HOH A 110 469 155 HOH TIP . G 4 HOH A 111 470 156 HOH TIP . H 4 HOH B 1 359 7 HOH TIP . H 4 HOH B 2 360 9 HOH TIP . H 4 HOH B 3 361 12 HOH TIP . H 4 HOH B 4 362 14 HOH TIP . H 4 HOH B 5 363 19 HOH TIP . H 4 HOH B 6 364 25 HOH TIP . H 4 HOH B 7 365 26 HOH TIP . H 4 HOH B 8 366 27 HOH TIP . H 4 HOH B 9 367 30 HOH TIP . H 4 HOH B 10 368 33 HOH TIP . H 4 HOH B 11 369 35 HOH TIP . H 4 HOH B 12 370 37 HOH TIP . H 4 HOH B 13 371 44 HOH TIP . H 4 HOH B 14 373 56 HOH TIP . H 4 HOH B 15 374 62 HOH TIP . H 4 HOH B 16 375 66 HOH TIP . H 4 HOH B 17 376 67 HOH TIP . H 4 HOH B 18 377 73 HOH TIP . H 4 HOH B 19 378 74 HOH TIP . H 4 HOH B 20 379 78 HOH TIP . H 4 HOH B 21 380 79 HOH TIP . H 4 HOH B 22 381 80 HOH TIP . H 4 HOH B 23 382 84 HOH TIP . H 4 HOH B 24 383 93 HOH TIP . H 4 HOH B 25 384 96 HOH TIP . H 4 HOH B 26 385 101 HOH TIP . H 4 HOH B 27 386 102 HOH TIP . H 4 HOH B 28 387 104 HOH TIP . H 4 HOH B 29 388 106 HOH TIP . H 4 HOH B 30 389 107 HOH TIP . H 4 HOH B 31 390 108 HOH TIP . H 4 HOH B 32 391 114 HOH TIP . H 4 HOH B 33 392 116 HOH TIP . H 4 HOH B 34 393 119 HOH TIP . H 4 HOH B 35 394 120 HOH TIP . H 4 HOH B 36 395 126 HOH TIP . H 4 HOH B 37 396 128 HOH TIP . H 4 HOH B 38 397 129 HOH TIP . H 4 HOH B 39 398 139 HOH TIP . H 4 HOH B 40 399 140 HOH TIP . H 4 HOH B 41 400 142 HOH TIP . H 4 HOH B 42 401 149 HOH TIP . H 4 HOH B 43 402 150 HOH TIP . H 4 HOH B 44 403 152 HOH TIP . H 4 HOH B 45 404 153 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLP . . . C 2 42.581 34.323 10.57 1 16.36 ? N1 PLP 371 A 1 HETATM 2 C C2 PLP . . . C 2 41.471 34.955 11.136 1 18.91 ? C2 PLP 371 A 1 HETATM 3 C C2A PLP . . . C 2 41.617 35.566 12.532 1 19 ? C2A PLP 371 A 1 HETATM 4 C C3 PLP . . . C 2 40.249 34.99 10.372 1 18.78 ? C3 PLP 371 A 1 HETATM 5 O O3 PLP . . . C 2 39.159 35.591 10.879 1 21.3 ? O3 PLP 371 A 1 HETATM 6 C C4 PLP . . . C 2 40.194 34.376 9.059 1 18.1 ? C4 PLP 371 A 1 HETATM 7 C C4A PLP . . . C 2 38.819 34.428 8.272 1 20.36 ? C4A PLP 371 A 1 HETATM 8 C C5 PLP . . . C 2 41.412 33.733 8.53 1 16.87 ? C5 PLP 371 A 1 HETATM 9 C C6 PLP . . . C 2 42.578 33.72 9.295 1 16.61 ? C6 PLP 371 A 1 HETATM 10 C C5A PLP . . . C 2 41.513 33.072 7.21 1 16.43 ? C5A PLP 371 A 1 HETATM 11 O O4P PLP . . . C 2 40.711 31.928 7.087 1 15.57 ? O4P PLP 371 A 1 HETATM 12 P P PLP . . . C 2 39.934 31.624 5.735 1 15.74 ? P PLP 371 A 1 HETATM 13 O O1P PLP . . . C 2 38.965 32.702 5.383 1 14.38 ? O1P PLP 371 A 1 HETATM 14 O O2P PLP . . . C 2 39.243 30.277 6.059 1 15.03 ? O2P PLP 371 A 1 HETATM 15 O O3P PLP . . . C 2 41.001 31.33 4.72 1 13.87 ? O3P PLP 371 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 214 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #