data_3V01 # _model_server_result.job_id lp1s7h-UyDLorbf47Z8SmA _model_server_result.datetime_utc '2024-11-26 12:21:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3v01 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 3V01 # _exptl.entry_id 3V01 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3V01 _cell.length_a 81.619 _cell.length_b 81.619 _cell.length_c 129.521 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3V01 _symmetry.cell_setting ? _symmetry.Int_Tables_number 171 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 135 A ASN 195 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc2 A OD2 ASP 148 A ASP 208 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc3 C O1B ATP . A ATP 502 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.913 ? metalc ? metalc4 C O2A ATP . A ATP 502 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 114 n n PG O2G ATP sing 115 n n PG O3G ATP sing 116 n n PG O3B ATP sing 117 n n O2G HOG2 ATP sing 118 n n O3G HOG3 ATP sing 119 n n PB O1B ATP doub 120 n n PB O2B ATP sing 121 n n PB O3B ATP sing 122 n n PB O3A ATP sing 123 n n O2B HOB2 ATP sing 124 n n PA O1A ATP doub 125 n n PA O2A ATP sing 126 n n PA O3A ATP sing 127 n n PA O5' ATP sing 128 n n O2A HOA2 ATP sing 129 n n O5' C5' ATP sing 130 n n C5' C4' ATP sing 131 n n C5' "H5'1" ATP sing 132 n n C5' "H5'2" ATP sing 133 n n C4' O4' ATP sing 134 n n C4' C3' ATP sing 135 n n C4' H4' ATP sing 136 n n O4' C1' ATP sing 137 n n C3' O3' ATP sing 138 n n C3' C2' ATP sing 139 n n C3' H3' ATP sing 140 n n O3' HO3' ATP sing 141 n n C2' O2' ATP sing 142 n n C2' C1' ATP sing 143 n n C2' H2' ATP sing 144 n n O2' HO2' ATP sing 145 n n C1' N9 ATP sing 146 n n C1' H1' ATP sing 147 n n N9 C8 ATP sing 148 n y N9 C4 ATP sing 149 n y C8 N7 ATP doub 150 n y C8 H8 ATP sing 151 n n N7 C5 ATP sing 152 n y C5 C6 ATP sing 153 n y C5 C4 ATP doub 154 n y C6 N6 ATP sing 155 n n C6 N1 ATP doub 156 n y N6 HN61 ATP sing 157 n n N6 HN62 ATP sing 158 n n N1 C2 ATP sing 159 n y C2 N3 ATP doub 160 n y C2 H2 ATP sing 161 n n N3 C4 ATP sing 162 n y # _atom_sites.entry_id 3V01 _atom_sites.fract_transf_matrix[1][1] 0.012252 _atom_sites.fract_transf_matrix[1][2] 0.007074 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014147 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007721 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 3V0 A 1 501 1 3V0 3V0 . C 3 ATP A 1 502 2 ATP ATP . D 4 MG A 1 503 3 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . C 3 24.072 27.762 -11.746 1 99.89 ? PG ATP 502 A 1 HETATM 2 O O1G ATP . . . C 3 23.543 27.756 -10.331 1 96.79 ? O1G ATP 502 A 1 HETATM 3 O O2G ATP . . . C 3 25.586 27.56 -11.905 1 99.51 ? O2G ATP 502 A 1 HETATM 4 O O3G ATP . . . C 3 23.449 28.872 -12.577 1 97.24 ? O3G ATP 502 A 1 HETATM 5 P PB ATP . . . C 3 24.312 25.645 -13.472 1 70.63 ? PB ATP 502 A 1 HETATM 6 O O1B ATP . . . C 3 25.686 25.326 -12.952 1 74 ? O1B ATP 502 A 1 HETATM 7 O O2B ATP . . . C 3 23.345 24.592 -13.938 1 77.14 ? O2B ATP 502 A 1 HETATM 8 O O3B ATP . . . C 3 23.477 26.394 -12.348 1 86.82 ? O3B ATP 502 A 1 HETATM 9 P PA ATP . . . C 3 25.418 26.674 -15.89 1 60.7 ? PA ATP 502 A 1 HETATM 10 O O1A ATP . . . C 3 25.171 27.841 -16.81 1 68.33 ? O1A ATP 502 A 1 HETATM 11 O O2A ATP . . . C 3 26.848 26.379 -15.466 1 68.1 ? O2A ATP 502 A 1 HETATM 12 O O3A ATP . . . C 3 24.467 26.793 -14.596 1 64.33 ? O3A ATP 502 A 1 HETATM 13 O O5' ATP . . . C 3 24.959 25.327 -16.627 1 64.64 ? O5' ATP 502 A 1 HETATM 14 C C5' ATP . . . C 3 23.638 25.084 -17.064 1 72.32 ? C5' ATP 502 A 1 HETATM 15 C C4' ATP . . . C 3 23.545 23.599 -17.421 1 73.64 ? C4' ATP 502 A 1 HETATM 16 O O4' ATP . . . C 3 24.35 23.339 -18.562 1 68.54 ? O4' ATP 502 A 1 HETATM 17 C C3' ATP . . . C 3 24.054 22.644 -16.361 1 72.33 ? C3' ATP 502 A 1 HETATM 18 O O3' ATP . . . C 3 23.022 22.317 -15.423 1 76.73 ? O3' ATP 502 A 1 HETATM 19 C C2' ATP . . . C 3 24.467 21.441 -17.18 1 72.43 ? C2' ATP 502 A 1 HETATM 20 O O2' ATP . . . C 3 23.374 20.521 -17.287 1 78.47 ? O2' ATP 502 A 1 HETATM 21 C C1' ATP . . . C 3 24.749 21.993 -18.561 1 67.04 ? C1' ATP 502 A 1 HETATM 22 N N9 ATP . . . C 3 26.167 21.976 -18.9 1 63.7 ? N9 ATP 502 A 1 HETATM 23 C C8 ATP . . . C 3 27.063 22.898 -18.538 1 63.72 ? C8 ATP 502 A 1 HETATM 24 N N7 ATP . . . C 3 28.278 22.565 -19.019 1 64.94 ? N7 ATP 502 A 1 HETATM 25 C C5 ATP . . . C 3 28.16 21.414 -19.717 1 66.68 ? C5 ATP 502 A 1 HETATM 26 C C6 ATP . . . C 3 29.045 20.511 -20.509 1 64.76 ? C6 ATP 502 A 1 HETATM 27 N N6 ATP . . . C 3 30.343 20.812 -20.616 1 64.72 ? N6 ATP 502 A 1 HETATM 28 N N1 ATP . . . C 3 28.545 19.391 -21.088 1 63.11 ? N1 ATP 502 A 1 HETATM 29 C C2 ATP . . . C 3 27.234 19.096 -20.963 1 64.51 ? C2 ATP 502 A 1 HETATM 30 N N3 ATP . . . C 3 26.367 19.872 -20.273 1 66.8 ? N3 ATP 502 A 1 HETATM 31 C C4 ATP . . . C 3 26.753 21.027 -19.639 1 67.6 ? C4 ATP 502 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #