data_3V04 # _model_server_result.job_id vpBxNZP9FKT1c2OImeZTxQ _model_server_result.datetime_utc '2024-12-07 11:12:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3v04 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 3V04 # _exptl.entry_id 3V04 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.21 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[(2-fluoro-4-iodophenyl)amino]-N-(2-hydroxyethoxy)-1H-indazole-5-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3V04 _cell.length_a 82.113 _cell.length_b 82.113 _cell.length_c 129.303 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3V04 _symmetry.cell_setting ? _symmetry.Int_Tables_number 171 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 135 A ASN 195 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc2 A OD2 ASP 148 A ASP 208 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? metalc ? metalc3 C O2A ATP . A ATP 502 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc4 C O1B ATP . A ATP 502 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? # _chem_comp.formula 'C16 H14 F I N4 O3' _chem_comp.formula_weight 456.21 _chem_comp.id V04 _chem_comp.mon_nstd_flag . _chem_comp.name 4-[(2-fluoro-4-iodophenyl)amino]-N-(2-hydroxyethoxy)-1H-indazole-5-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 V04 doub 405 n y C1 C14 V04 sing 406 n n C1 C4 V04 sing 407 n y C13 F1 V04 sing 408 n n C11 I1 V04 sing 409 n n N1 C6 V04 sing 410 n y N1 N2 V04 sing 411 n y C14 O1 V04 doub 412 n n C3 C2 V04 sing 413 n y C2 H2 V04 sing 414 n n N2 C7 V04 doub 415 n y N4 O2 V04 sing 416 n n O2 C15 V04 sing 417 n n C3 C6 V04 doub 418 n y C3 H3 V04 sing 419 n n C4 N3 V04 sing 420 n n N3 C8 V04 sing 421 n n N3 HN3 V04 sing 422 n n C16 O3 V04 sing 423 n n O3 HO3 V04 sing 424 n n C5 C4 V04 doub 425 n y N4 C14 V04 sing 426 n n N4 HN4 V04 sing 427 n n C6 C5 V04 sing 428 n y C5 C7 V04 sing 429 n y C7 H7 V04 sing 430 n n C9 C8 V04 doub 431 n y C8 C13 V04 sing 432 n y C9 C10 V04 sing 433 n y C9 H9 V04 sing 434 n n C10 C11 V04 doub 435 n y C10 H10 V04 sing 436 n n C11 C12 V04 sing 437 n y C13 C12 V04 doub 438 n y C12 H12 V04 sing 439 n n C15 C16 V04 sing 440 n n C15 H15 V04 sing 441 n n C15 H15A V04 sing 442 n n C16 H16 V04 sing 443 n n C16 H16A V04 sing 444 n n N1 HN1 V04 sing 445 n n # _atom_sites.entry_id 3V04 _atom_sites.fract_transf_matrix[1][1] 0.012178 _atom_sites.fract_transf_matrix[1][2] 0.007031 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014062 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007734 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 V04 A 1 501 1 V04 V04 . C 3 ATP A 1 502 2 ATP ATP . D 4 MG A 1 503 3 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 V04 . . . B 2 32.483 -30.442 -28.337 1 63.31 ? C1 V04 501 A 1 HETATM 2 F F1 V04 . . . B 2 32.717 -27.66 -24.61 1 65.01 ? F1 V04 501 A 1 HETATM 3 I I1 V04 . . . B 2 36.54 -23.95 -24.943 1 64.95 ? I1 V04 501 A 1 HETATM 4 N N1 V04 . . . B 2 36.129 -32.119 -29.206 1 63.37 ? N1 V04 501 A 1 HETATM 5 O O1 V04 . . . B 2 30.873 -29.442 -26.9 1 67.56 ? O1 V04 501 A 1 HETATM 6 C C2 V04 . . . B 2 32.505 -31.377 -29.369 1 62.24 ? C2 V04 501 A 1 HETATM 7 N N2 V04 . . . B 2 36.964 -31.488 -28.265 1 64.3 ? N2 V04 501 A 1 HETATM 8 O O2 V04 . . . B 2 29.001 -29.325 -28.807 1 80.92 ? O2 V04 501 A 1 HETATM 9 C C3 V04 . . . B 2 33.69 -31.991 -29.733 1 62.95 ? C3 V04 501 A 1 HETATM 10 N N3 V04 . . . B 2 33.582 -29.195 -26.632 1 62.92 ? N3 V04 501 A 1 HETATM 11 O O3 V04 . . . B 2 26.037 -30.67 -27.275 1 84.29 ? O3 V04 501 A 1 HETATM 12 C C4 V04 . . . B 2 33.66 -30.1 -27.656 1 62.68 ? C4 V04 501 A 1 HETATM 13 N N4 V04 . . . B 2 30.248 -29.82 -29.005 1 72.83 ? N4 V04 501 A 1 HETATM 14 C C5 V04 . . . B 2 34.858 -30.748 -28.018 1 62.86 ? C5 V04 501 A 1 HETATM 15 C C6 V04 . . . B 2 34.858 -31.672 -29.059 1 63.31 ? C6 V04 501 A 1 HETATM 16 C C7 V04 . . . B 2 36.199 -30.642 -27.545 1 63.57 ? C7 V04 501 A 1 HETATM 17 C C8 V04 . . . B 2 34.291 -28.06 -26.342 1 63.58 ? C8 V04 501 A 1 HETATM 18 C C9 V04 . . . B 2 35.444 -27.634 -27.012 1 62.23 ? C9 V04 501 A 1 HETATM 19 C C10 V04 . . . B 2 36.101 -26.468 -26.625 1 62.02 ? C10 V04 501 A 1 HETATM 20 C C11 V04 . . . B 2 35.61 -25.713 -25.564 1 62.4 ? C11 V04 501 A 1 HETATM 21 C C12 V04 . . . B 2 34.472 -26.125 -24.896 1 62.48 ? C12 V04 501 A 1 HETATM 22 C C13 V04 . . . B 2 33.82 -27.288 -25.283 1 64.58 ? C13 V04 501 A 1 HETATM 23 C C14 V04 . . . B 2 31.14 -29.848 -28.021 1 64.89 ? C14 V04 501 A 1 HETATM 24 C C15 V04 . . . B 2 27.903 -30.24 -28.734 1 80.58 ? C15 V04 501 A 1 HETATM 25 C C16 V04 . . . B 2 27.432 -30.379 -27.29 1 82.23 ? C16 V04 501 A 1 # _model_server_stats.io_time_ms 115 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 25 #