data_3V09 # _model_server_result.job_id JrRCliS_EQlHq50DgtW5uA _model_server_result.datetime_utc '2024-11-18 20:30:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3v09 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":605}' # _entry.id 3V09 # _exptl.entry_id 3V09 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 103.12 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'UNKNOWN ATOM OR ION' _entity.pdbx_number_of_molecules 22 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3V09 _cell.length_a 75.463 _cell.length_b 81.884 _cell.length_c 104.851 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3V09 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N ? 4 N N N ? 4 O N N ? 4 P N N ? 4 Q N N ? 4 R N N ? 4 S N N ? 4 T N N ? 4 U N N ? 4 V N N ? 4 W N N ? 4 X N N ? 4 Y N N ? 4 Z N N ? 4 AA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 53 A CYS 53 1_555 A SG CYS 62 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? disulf ? disulf2 A SG CYS 75 A CYS 75 1_555 A SG CYS 91 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf3 A SG CYS 90 A CYS 90 1_555 A SG CYS 101 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? disulf ? disulf4 A SG CYS 124 A CYS 124 1_555 A SG CYS 169 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf5 A SG CYS 168 A CYS 168 1_555 A SG CYS 177 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? disulf ? disulf6 A SG CYS 200 A CYS 200 1_555 A SG CYS 246 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? disulf ? disulf7 A SG CYS 245 A CYS 245 1_555 A SG CYS 253 A CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf8 A SG CYS 265 A CYS 265 1_555 A SG CYS 279 A CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf9 A SG CYS 278 A CYS 278 1_555 A SG CYS 289 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? disulf ? disulf10 A SG CYS 316 A CYS 316 1_555 A SG CYS 361 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? disulf ? disulf11 A SG CYS 360 A CYS 360 1_555 A SG CYS 369 A CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf12 A SG CYS 392 A CYS 392 1_555 A SG CYS 438 A CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? disulf ? disulf13 A SG CYS 437 A CYS 437 1_555 A SG CYS 448 A CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? disulf ? disulf14 A SG CYS 461 A CYS 461 1_555 A SG CYS 477 A CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf15 A SG CYS 476 A CYS 476 1_555 A SG CYS 487 A CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? disulf ? disulf16 A SG CYS 514 A CYS 514 1_555 A SG CYS 559 A CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf17 A SG CYS 558 A CYS 558 1_555 A SG CYS 567 A CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? # _chem_comp.formula ? _chem_comp.formula_weight ? _chem_comp.id UNX _chem_comp.mon_nstd_flag . _chem_comp.name 'UNKNOWN ATOM OR ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3V09 _atom_sites.fract_transf_matrix[1][1] 0.013252 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012212 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009537 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MES A 1 585 1 MES MES . C 3 PG4 A 1 586 1 PG4 PG4 . D 3 PG4 A 1 587 1 PG4 PG4 . E 2 MES A 1 588 1 MES MES . F 4 UNX A 1 589 1 UNX UNL . G 4 UNX A 1 590 1 UNX UNL . H 4 UNX A 1 591 1 UNX UNL . I 4 UNX A 1 592 1 UNX UNL . J 4 UNX A 1 593 1 UNX UNL . K 4 UNX A 1 594 1 UNX UNL . L 4 UNX A 1 595 1 UNX UNL . M 4 UNX A 1 596 1 UNX UNL . N 4 UNX A 1 597 1 UNX UNL . O 4 UNX A 1 598 1 UNX UNL . P 4 UNX A 1 599 1 UNX UNL . Q 4 UNX A 1 600 1 UNX UNL . R 4 UNX A 1 601 1 UNX UNL . S 4 UNX A 1 602 1 UNX UNL . T 4 UNX A 1 603 1 UNX UNL . U 4 UNX A 1 604 1 UNX UNL . V 4 UNX A 1 605 1 UNX UNL . W 4 UNX A 1 606 1 UNX UNL . X 4 UNX A 1 607 1 UNX UNL . Y 4 UNX A 1 608 1 UNX UNL . Z 4 UNX A 1 609 1 UNX UNL . AA 4 UNX A 1 610 1 UNX UNL . BA 5 EDO A 1 611 1 EDO EDO . CA 5 EDO A 1 612 1 EDO EDO . DA 5 EDO A 1 613 1 EDO EDO . EA 5 EDO A 1 614 1 EDO EDO . FA 5 EDO A 1 615 1 EDO EDO . GA 6 CL A 1 616 1 CL CL . HA 3 PG4 A 1 617 1 PG4 PG4 . IA 7 HOH A 1 618 1 HOH HOH . IA 7 HOH A 2 619 2 HOH HOH . IA 7 HOH A 3 620 3 HOH HOH . IA 7 HOH A 4 621 4 HOH HOH . IA 7 HOH A 5 622 5 HOH HOH . IA 7 HOH A 6 623 6 HOH HOH . IA 7 HOH A 7 624 7 HOH HOH . IA 7 HOH A 8 625 9 HOH HOH . IA 7 HOH A 9 626 10 HOH HOH . IA 7 HOH A 10 627 11 HOH HOH . IA 7 HOH A 11 628 12 HOH HOH . IA 7 HOH A 12 629 13 HOH HOH . IA 7 HOH A 13 630 14 HOH HOH . IA 7 HOH A 14 631 15 HOH HOH . IA 7 HOH A 15 632 17 HOH HOH . IA 7 HOH A 16 633 19 HOH HOH . IA 7 HOH A 17 634 21 HOH HOH . IA 7 HOH A 18 635 22 HOH HOH . IA 7 HOH A 19 636 23 HOH HOH . IA 7 HOH A 20 637 24 HOH HOH . IA 7 HOH A 21 638 25 HOH HOH . IA 7 HOH A 22 639 26 HOH HOH . IA 7 HOH A 23 640 27 HOH HOH . IA 7 HOH A 24 641 29 HOH HOH . IA 7 HOH A 25 642 30 HOH HOH . IA 7 HOH A 26 643 31 HOH HOH . IA 7 HOH A 27 644 32 HOH HOH . IA 7 HOH A 28 645 33 HOH HOH . IA 7 HOH A 29 646 34 HOH HOH . IA 7 HOH A 30 647 35 HOH HOH . IA 7 HOH A 31 648 36 HOH HOH . IA 7 HOH A 32 649 37 HOH HOH . IA 7 HOH A 33 650 38 HOH HOH . IA 7 HOH A 34 651 39 HOH HOH . IA 7 HOH A 35 652 42 HOH HOH . IA 7 HOH A 36 653 43 HOH HOH . IA 7 HOH A 37 654 46 HOH HOH . IA 7 HOH A 38 655 47 HOH HOH . IA 7 HOH A 39 656 48 HOH HOH . IA 7 HOH A 40 657 49 HOH HOH . IA 7 HOH A 41 658 50 HOH HOH . IA 7 HOH A 42 659 51 HOH HOH . IA 7 HOH A 43 660 53 HOH HOH . IA 7 HOH A 44 661 54 HOH HOH . IA 7 HOH A 45 662 56 HOH HOH . IA 7 HOH A 46 663 57 HOH HOH . IA 7 HOH A 47 664 58 HOH HOH . IA 7 HOH A 48 665 59 HOH HOH . IA 7 HOH A 49 666 60 HOH HOH . IA 7 HOH A 50 667 61 HOH HOH . IA 7 HOH A 51 668 62 HOH HOH . IA 7 HOH A 52 669 64 HOH HOH . IA 7 HOH A 53 670 65 HOH HOH . IA 7 HOH A 54 671 66 HOH HOH . IA 7 HOH A 55 672 67 HOH HOH . IA 7 HOH A 56 673 68 HOH HOH . IA 7 HOH A 57 674 69 HOH HOH . IA 7 HOH A 58 675 70 HOH HOH . IA 7 HOH A 59 676 71 HOH HOH . IA 7 HOH A 60 677 72 HOH HOH . IA 7 HOH A 61 678 73 HOH HOH . IA 7 HOH A 62 679 74 HOH HOH . IA 7 HOH A 63 680 75 HOH HOH . IA 7 HOH A 64 681 77 HOH HOH . IA 7 HOH A 65 682 78 HOH HOH . IA 7 HOH A 66 683 80 HOH HOH . IA 7 HOH A 67 684 81 HOH HOH . IA 7 HOH A 68 685 82 HOH HOH . IA 7 HOH A 69 686 83 HOH HOH . IA 7 HOH A 70 687 84 HOH HOH . IA 7 HOH A 71 688 85 HOH HOH . IA 7 HOH A 72 689 86 HOH HOH . IA 7 HOH A 73 690 87 HOH HOH . IA 7 HOH A 74 691 89 HOH HOH . IA 7 HOH A 75 692 90 HOH HOH . IA 7 HOH A 76 693 91 HOH HOH . IA 7 HOH A 77 694 93 HOH HOH . IA 7 HOH A 78 695 94 HOH HOH . IA 7 HOH A 79 696 96 HOH HOH . IA 7 HOH A 80 697 97 HOH HOH . IA 7 HOH A 81 698 98 HOH HOH . IA 7 HOH A 82 699 99 HOH HOH . IA 7 HOH A 83 700 100 HOH HOH . IA 7 HOH A 84 701 102 HOH HOH . IA 7 HOH A 85 702 104 HOH HOH . IA 7 HOH A 86 703 105 HOH HOH . IA 7 HOH A 87 704 107 HOH HOH . IA 7 HOH A 88 705 108 HOH HOH . IA 7 HOH A 89 706 109 HOH HOH . IA 7 HOH A 90 707 111 HOH HOH . IA 7 HOH A 91 708 113 HOH HOH . IA 7 HOH A 92 709 114 HOH HOH . IA 7 HOH A 93 710 115 HOH HOH . IA 7 HOH A 94 711 116 HOH HOH . IA 7 HOH A 95 712 117 HOH HOH . IA 7 HOH A 96 713 118 HOH HOH . IA 7 HOH A 97 714 120 HOH HOH . IA 7 HOH A 98 715 121 HOH HOH . IA 7 HOH A 99 716 123 HOH HOH . IA 7 HOH A 100 717 124 HOH HOH . IA 7 HOH A 101 718 125 HOH HOH . IA 7 HOH A 102 719 126 HOH HOH . IA 7 HOH A 103 720 127 HOH HOH . IA 7 HOH A 104 721 130 HOH HOH . IA 7 HOH A 105 722 131 HOH HOH . IA 7 HOH A 106 723 132 HOH HOH . IA 7 HOH A 107 724 133 HOH HOH . IA 7 HOH A 108 725 135 HOH HOH . IA 7 HOH A 109 726 136 HOH HOH . IA 7 HOH A 110 727 137 HOH HOH . IA 7 HOH A 111 728 138 HOH HOH . IA 7 HOH A 112 729 139 HOH HOH . IA 7 HOH A 113 730 141 HOH HOH . IA 7 HOH A 114 731 142 HOH HOH . IA 7 HOH A 115 732 143 HOH HOH . IA 7 HOH A 116 733 145 HOH HOH . IA 7 HOH A 117 734 146 HOH HOH . IA 7 HOH A 118 735 147 HOH HOH . IA 7 HOH A 119 736 149 HOH HOH . IA 7 HOH A 120 737 150 HOH HOH . IA 7 HOH A 121 738 152 HOH HOH . IA 7 HOH A 122 739 154 HOH HOH . IA 7 HOH A 123 740 155 HOH HOH . IA 7 HOH A 124 741 160 HOH HOH . IA 7 HOH A 125 742 161 HOH HOH . IA 7 HOH A 126 743 162 HOH HOH . IA 7 HOH A 127 744 163 HOH HOH . IA 7 HOH A 128 745 165 HOH HOH . IA 7 HOH A 129 746 166 HOH HOH . IA 7 HOH A 130 747 168 HOH HOH . IA 7 HOH A 131 748 169 HOH HOH . IA 7 HOH A 132 749 170 HOH HOH . IA 7 HOH A 133 750 173 HOH HOH . IA 7 HOH A 134 751 176 HOH HOH . IA 7 HOH A 135 752 178 HOH HOH . IA 7 HOH A 136 753 179 HOH HOH . IA 7 HOH A 137 754 180 HOH HOH . IA 7 HOH A 138 755 181 HOH HOH . IA 7 HOH A 139 756 182 HOH HOH . IA 7 HOH A 140 757 183 HOH HOH . IA 7 HOH A 141 758 184 HOH HOH . IA 7 HOH A 142 759 188 HOH HOH . IA 7 HOH A 143 760 191 HOH HOH . IA 7 HOH A 144 761 192 HOH HOH . IA 7 HOH A 145 762 194 HOH HOH . IA 7 HOH A 146 763 195 HOH HOH . IA 7 HOH A 147 764 196 HOH HOH . IA 7 HOH A 148 765 197 HOH HOH . IA 7 HOH A 149 766 198 HOH HOH . IA 7 HOH A 150 767 199 HOH HOH . IA 7 HOH A 151 768 200 HOH HOH . IA 7 HOH A 152 769 201 HOH HOH . IA 7 HOH A 153 770 202 HOH HOH . IA 7 HOH A 154 771 203 HOH HOH . IA 7 HOH A 155 772 204 HOH HOH . IA 7 HOH A 156 773 205 HOH HOH . IA 7 HOH A 157 774 206 HOH HOH . IA 7 HOH A 158 775 207 HOH HOH . IA 7 HOH A 159 776 208 HOH HOH . IA 7 HOH A 160 777 209 HOH HOH . IA 7 HOH A 161 778 210 HOH HOH . IA 7 HOH A 162 779 211 HOH HOH . IA 7 HOH A 163 780 212 HOH HOH . IA 7 HOH A 164 781 213 HOH HOH . IA 7 HOH A 165 782 214 HOH HOH . IA 7 HOH A 166 783 215 HOH HOH . IA 7 HOH A 167 784 216 HOH HOH . IA 7 HOH A 168 785 217 HOH HOH . IA 7 HOH A 169 786 218 HOH HOH . IA 7 HOH A 170 787 219 HOH HOH . IA 7 HOH A 171 788 220 HOH HOH . IA 7 HOH A 172 789 221 HOH HOH . IA 7 HOH A 173 790 222 HOH HOH . IA 7 HOH A 174 791 223 HOH HOH . IA 7 HOH A 175 792 224 HOH HOH . IA 7 HOH A 176 793 225 HOH HOH . IA 7 HOH A 177 794 226 HOH HOH . IA 7 HOH A 178 795 227 HOH HOH . IA 7 HOH A 179 796 228 HOH HOH . IA 7 HOH A 180 797 229 HOH HOH . IA 7 HOH A 181 798 230 HOH HOH . IA 7 HOH A 182 799 231 HOH HOH . IA 7 HOH A 183 800 232 HOH HOH . IA 7 HOH A 184 801 233 HOH HOH . IA 7 HOH A 185 802 234 HOH HOH . IA 7 HOH A 186 803 235 HOH HOH . IA 7 HOH A 187 804 236 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol X _atom_site.label_atom_id UNK _atom_site.label_comp_id UNX _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id V _atom_site.label_entity_id 4 _atom_site.Cartn_x 20.348 _atom_site.Cartn_y 18.175 _atom_site.Cartn_z 9.504 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 50.93 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id UNK _atom_site.auth_comp_id UNX _atom_site.auth_seq_id 605 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #