data_3V0L
#
_model_server_result.job_id            HbBX0wWqN7x1lrlABcLOpA 
_model_server_result.datetime_utc      '2024-11-07 13:12:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3v0l 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1}' 
#
_entry.id    3V0L 
#
_exptl.entry_id    3V0L 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              54.938 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE (II) ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3V0L 
_cell.length_a            52.43 
_cell.length_b            148.58 
_cell.length_c            78.8 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3V0L 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E 1 1,2 
A,B,C,D,E 2 1,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 39.4 
3 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 52.43 0 39.4 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B MN MN . A MN 1 1_555 A OD2 ASP 155 A ASP 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? 
metalc ? metalc2 B MN MN . A MN 1 1_555 A OD1 ASP 157 A ASP 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? 
metalc ? metalc3 B MN MN . A MN 1 1_555 A OD2 ASP 157 A ASP 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? 
metalc ? metalc4 B MN MN . A MN 1 1_555 C OAK 2GW . A 2GW 450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? 
metalc ? metalc5 B MN MN . A MN 1 1_555 C OAL 2GW . A 2GW 450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? 
metalc ? metalc6 B MN MN . A MN 1 1_555 E O HOH . A HOH 1144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
#
_chem_comp.formula           'Mn 2' 
_chem_comp.formula_weight    54.938 
_chem_comp.id                MN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3V0L 
_atom_sites.fract_transf_matrix[1][1]    0.019073 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00673 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01269 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MN A 1 1 1 MN MN . 
C 3 2GW A 1 450 450 2GW 2GW . 
D 4 SO4 A 1 2 2 SO4 SO4 . 
E 5 HOH A 1 1001 1001 HOH HOH . 
E 5 HOH A 2 1002 1002 HOH HOH . 
E 5 HOH A 3 1004 1004 HOH HOH . 
E 5 HOH A 4 1005 1005 HOH HOH . 
E 5 HOH A 5 1006 1006 HOH HOH . 
E 5 HOH A 6 1007 1007 HOH HOH . 
E 5 HOH A 7 1008 1008 HOH HOH . 
E 5 HOH A 8 1009 1009 HOH HOH . 
E 5 HOH A 9 1010 1010 HOH HOH . 
E 5 HOH A 10 1011 1011 HOH HOH . 
E 5 HOH A 11 1012 1012 HOH HOH . 
E 5 HOH A 12 1013 1013 HOH HOH . 
E 5 HOH A 13 1014 1014 HOH HOH . 
E 5 HOH A 14 1015 1015 HOH HOH . 
E 5 HOH A 15 1016 1016 HOH HOH . 
E 5 HOH A 16 1017 1017 HOH HOH . 
E 5 HOH A 17 1018 1018 HOH HOH . 
E 5 HOH A 18 1019 1019 HOH HOH . 
E 5 HOH A 19 1020 1020 HOH HOH . 
E 5 HOH A 20 1021 1021 HOH HOH . 
E 5 HOH A 21 1022 1022 HOH HOH . 
E 5 HOH A 22 1023 1023 HOH HOH . 
E 5 HOH A 23 1024 1024 HOH HOH . 
E 5 HOH A 24 1025 1025 HOH HOH . 
E 5 HOH A 25 1026 1026 HOH HOH . 
E 5 HOH A 26 1027 1027 HOH HOH . 
E 5 HOH A 27 1028 1028 HOH HOH . 
E 5 HOH A 28 1029 1029 HOH HOH . 
E 5 HOH A 29 1030 1030 HOH HOH . 
E 5 HOH A 30 1031 1031 HOH HOH . 
E 5 HOH A 31 1032 1032 HOH HOH . 
E 5 HOH A 32 1033 1033 HOH HOH . 
E 5 HOH A 33 1034 1034 HOH HOH . 
E 5 HOH A 34 1035 1035 HOH HOH . 
E 5 HOH A 35 1036 1036 HOH HOH . 
E 5 HOH A 36 1037 1037 HOH HOH . 
E 5 HOH A 37 1038 1038 HOH HOH . 
E 5 HOH A 38 1039 1039 HOH HOH . 
E 5 HOH A 39 1040 1040 HOH HOH . 
E 5 HOH A 40 1041 1041 HOH HOH . 
E 5 HOH A 41 1042 1042 HOH HOH . 
E 5 HOH A 42 1043 1043 HOH HOH . 
E 5 HOH A 43 1044 1044 HOH HOH . 
E 5 HOH A 44 1046 1046 HOH HOH . 
E 5 HOH A 45 1047 1047 HOH HOH . 
E 5 HOH A 46 1048 1048 HOH HOH . 
E 5 HOH A 47 1050 1050 HOH HOH . 
E 5 HOH A 48 1051 1051 HOH HOH . 
E 5 HOH A 49 1054 1054 HOH HOH . 
E 5 HOH A 50 1055 1055 HOH HOH . 
E 5 HOH A 51 1057 1057 HOH HOH . 
E 5 HOH A 52 1059 1059 HOH HOH . 
E 5 HOH A 53 1060 1060 HOH HOH . 
E 5 HOH A 54 1061 1061 HOH HOH . 
E 5 HOH A 55 1062 1062 HOH HOH . 
E 5 HOH A 56 1063 1063 HOH HOH . 
E 5 HOH A 57 1064 1064 HOH HOH . 
E 5 HOH A 58 1065 1065 HOH HOH . 
E 5 HOH A 59 1066 1066 HOH HOH . 
E 5 HOH A 60 1067 1067 HOH HOH . 
E 5 HOH A 61 1069 1069 HOH HOH . 
E 5 HOH A 62 1072 1072 HOH HOH . 
E 5 HOH A 63 1073 1073 HOH HOH . 
E 5 HOH A 64 1074 1074 HOH HOH . 
E 5 HOH A 65 1075 1075 HOH HOH . 
E 5 HOH A 66 1076 1076 HOH HOH . 
E 5 HOH A 67 1077 1077 HOH HOH . 
E 5 HOH A 68 1078 1078 HOH HOH . 
E 5 HOH A 69 1079 1079 HOH HOH . 
E 5 HOH A 70 1081 1081 HOH HOH . 
E 5 HOH A 71 1082 1082 HOH HOH . 
E 5 HOH A 72 1083 1083 HOH HOH . 
E 5 HOH A 73 1084 1084 HOH HOH . 
E 5 HOH A 74 1085 1085 HOH HOH . 
E 5 HOH A 75 1087 1087 HOH HOH . 
E 5 HOH A 76 1088 1088 HOH HOH . 
E 5 HOH A 77 1089 1089 HOH HOH . 
E 5 HOH A 78 1090 1090 HOH HOH . 
E 5 HOH A 79 1091 1091 HOH HOH . 
E 5 HOH A 80 1092 1092 HOH HOH . 
E 5 HOH A 81 1093 1093 HOH HOH . 
E 5 HOH A 82 1094 1094 HOH HOH . 
E 5 HOH A 83 1095 1095 HOH HOH . 
E 5 HOH A 84 1096 1096 HOH HOH . 
E 5 HOH A 85 1097 1097 HOH HOH . 
E 5 HOH A 86 1098 1098 HOH HOH . 
E 5 HOH A 87 1099 1099 HOH HOH . 
E 5 HOH A 88 1100 1100 HOH HOH . 
E 5 HOH A 89 1101 1101 HOH HOH . 
E 5 HOH A 90 1102 1102 HOH HOH . 
E 5 HOH A 91 1103 1103 HOH HOH . 
E 5 HOH A 92 1104 1104 HOH HOH . 
E 5 HOH A 93 1105 1105 HOH HOH . 
E 5 HOH A 94 1106 1106 HOH HOH . 
E 5 HOH A 95 1107 1107 HOH HOH . 
E 5 HOH A 96 1108 1108 HOH HOH . 
E 5 HOH A 97 1110 1110 HOH HOH . 
E 5 HOH A 98 1111 1111 HOH HOH . 
E 5 HOH A 99 1113 1113 HOH HOH . 
E 5 HOH A 100 1114 1114 HOH HOH . 
E 5 HOH A 101 1115 1115 HOH HOH . 
E 5 HOH A 102 1116 1116 HOH HOH . 
E 5 HOH A 103 1117 1117 HOH HOH . 
E 5 HOH A 104 1118 1118 HOH HOH . 
E 5 HOH A 105 1119 1119 HOH HOH . 
E 5 HOH A 106 1120 1120 HOH HOH . 
E 5 HOH A 107 1121 1121 HOH HOH . 
E 5 HOH A 108 1122 1122 HOH HOH . 
E 5 HOH A 109 1124 1124 HOH HOH . 
E 5 HOH A 110 1126 1126 HOH HOH . 
E 5 HOH A 111 1127 1127 HOH HOH . 
E 5 HOH A 112 1128 1128 HOH HOH . 
E 5 HOH A 113 1129 1129 HOH HOH . 
E 5 HOH A 114 1131 1131 HOH HOH . 
E 5 HOH A 115 1132 1132 HOH HOH . 
E 5 HOH A 116 1133 1133 HOH HOH . 
E 5 HOH A 117 1134 1134 HOH HOH . 
E 5 HOH A 118 1135 1135 HOH HOH . 
E 5 HOH A 119 1136 1136 HOH HOH . 
E 5 HOH A 120 1137 1137 HOH HOH . 
E 5 HOH A 121 1138 1138 HOH HOH . 
E 5 HOH A 122 1139 1139 HOH HOH . 
E 5 HOH A 123 1140 1140 HOH HOH . 
E 5 HOH A 124 1141 1141 HOH HOH . 
E 5 HOH A 125 1142 1142 HOH HOH . 
E 5 HOH A 126 1143 1143 HOH HOH . 
E 5 HOH A 127 1144 1144 HOH HOH . 
E 5 HOH A 128 1146 1146 HOH HOH . 
E 5 HOH A 129 1147 1147 HOH HOH . 
E 5 HOH A 130 1148 1148 HOH HOH . 
E 5 HOH A 131 1149 1149 HOH HOH . 
E 5 HOH A 132 1150 1150 HOH HOH . 
E 5 HOH A 133 1151 1151 HOH HOH . 
E 5 HOH A 134 1152 1152 HOH HOH . 
E 5 HOH A 135 1153 1153 HOH HOH . 
E 5 HOH A 136 1154 1154 HOH HOH . 
E 5 HOH A 137 1155 1155 HOH HOH . 
E 5 HOH A 138 1156 1156 HOH HOH . 
E 5 HOH A 139 1157 1157 HOH HOH . 
E 5 HOH A 140 1158 1158 HOH HOH . 
E 5 HOH A 141 1159 1159 HOH HOH . 
E 5 HOH A 142 1160 1160 HOH HOH . 
E 5 HOH A 143 1161 1161 HOH HOH . 
E 5 HOH A 144 1162 1162 HOH HOH . 
E 5 HOH A 145 1163 1163 HOH HOH . 
E 5 HOH A 146 1164 1164 HOH HOH . 
E 5 HOH A 147 1165 1165 HOH HOH . 
E 5 HOH A 148 1166 1166 HOH HOH . 
E 5 HOH A 149 1167 1167 HOH HOH . 
E 5 HOH A 150 1168 1168 HOH HOH . 
E 5 HOH A 151 1169 1169 HOH HOH . 
E 5 HOH A 152 1170 1170 HOH HOH . 
E 5 HOH A 153 1171 1171 HOH HOH . 
E 5 HOH A 154 1172 1172 HOH HOH . 
E 5 HOH A 155 1173 1173 HOH HOH . 
E 5 HOH A 156 1174 1174 HOH HOH . 
E 5 HOH A 157 1176 1176 HOH HOH . 
E 5 HOH A 158 1177 1177 HOH HOH . 
E 5 HOH A 159 1179 1179 HOH HOH . 
E 5 HOH A 160 1180 1180 HOH HOH . 
E 5 HOH A 161 1181 1181 HOH HOH . 
E 5 HOH A 162 1182 1182 HOH HOH . 
E 5 HOH A 163 1183 1183 HOH HOH . 
E 5 HOH A 164 1184 1184 HOH HOH . 
E 5 HOH A 165 1185 1185 HOH HOH . 
E 5 HOH A 166 1186 1186 HOH HOH . 
E 5 HOH A 167 1187 1187 HOH HOH . 
E 5 HOH A 168 1188 1188 HOH HOH . 
E 5 HOH A 169 1189 1189 HOH HOH . 
E 5 HOH A 170 1190 1190 HOH HOH . 
E 5 HOH A 171 1192 1192 HOH HOH . 
E 5 HOH A 172 1193 1193 HOH HOH . 
E 5 HOH A 173 1194 1194 HOH HOH . 
E 5 HOH A 174 1195 1195 HOH HOH . 
E 5 HOH A 175 1196 1196 HOH HOH . 
E 5 HOH A 176 1197 1197 HOH HOH . 
E 5 HOH A 177 1198 1198 HOH HOH . 
E 5 HOH A 178 1199 1199 HOH HOH . 
E 5 HOH A 179 1200 1200 HOH HOH . 
E 5 HOH A 180 1201 1201 HOH HOH . 
E 5 HOH A 181 1202 1202 HOH HOH . 
E 5 HOH A 182 1203 1203 HOH HOH . 
E 5 HOH A 183 1204 1204 HOH HOH . 
E 5 HOH A 184 1205 1205 HOH HOH . 
E 5 HOH A 185 1206 1206 HOH HOH . 
E 5 HOH A 186 1207 1207 HOH HOH . 
E 5 HOH A 187 1208 1208 HOH HOH . 
E 5 HOH A 188 1209 1209 HOH HOH . 
E 5 HOH A 189 1210 1210 HOH HOH . 
E 5 HOH A 190 1211 1211 HOH HOH . 
E 5 HOH A 191 1212 1212 HOH HOH . 
E 5 HOH A 192 1213 1213 HOH HOH . 
E 5 HOH A 193 1215 1215 HOH HOH . 
E 5 HOH A 194 1216 1216 HOH HOH . 
E 5 HOH A 195 1217 1217 HOH HOH . 
E 5 HOH A 196 1218 1218 HOH HOH . 
E 5 HOH A 197 1219 1219 HOH HOH . 
E 5 HOH A 198 1220 1220 HOH HOH . 
E 5 HOH A 199 1221 1221 HOH HOH . 
E 5 HOH A 200 1222 1222 HOH HOH . 
E 5 HOH A 201 1223 1223 HOH HOH . 
E 5 HOH A 202 1224 1224 HOH HOH . 
E 5 HOH A 203 1225 1225 HOH HOH . 
E 5 HOH A 204 1226 1226 HOH HOH . 
E 5 HOH A 205 1227 1227 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MN 
_atom_site.label_atom_id         MN 
_atom_site.label_comp_id         MN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               14.918 
_atom_site.Cartn_y               -16.655 
_atom_site.Cartn_z               -4.339 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        26.14 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MN 
_atom_site.auth_comp_id          MN 
_atom_site.auth_seq_id           1 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           333 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           1 
#