data_3V0R # _model_server_result.job_id 1Fh-t_vdZyWLaZQB-WnDCg _model_server_result.datetime_utc '2024-12-26 10:18:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3v0r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":209}' # _entry.id 3V0R # _exptl.entry_id 3V0R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 141.131 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,5,6-triaminopyrimidin-4-ol _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3V0R _cell.length_a 70.016 _cell.length_b 70.016 _cell.length_c 179.27 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3V0R _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N 1 1,2,3,4 A,B,C,D,E,F,G,H,I,J,K,L,M,N 2 1,5 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_545 y+1/2,x-1/2,-z+1/2 0 1 0 1 0 0 0 0 -1 35.008 -35.008 89.635 3 'crystal symmetry operation' 10_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 70.016 0 0 4 'crystal symmetry operation' 16_555 -y+1/2,-x+1/2,-z+1/2 0 -1 0 -1 0 0 0 0 -1 35.008 35.008 89.635 5 'crystal symmetry operation' 6_555 x,-y+1/2,-z+1/4 1 0 0 0 -1 0 0 0 -1 0 35.008 44.8175 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 K N N ? 4 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 30 1_555 A SG CYS 6 A CYS 30 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? disulf ? disulf2 A SG CYS 50 A CYS 74 1_555 A SG CYS 65 A CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? disulf ? disulf3 A SG CYS 104 A CYS 128 1_555 A SG CYS 116 A CYS 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? # _chem_comp.formula 'C4 H7 N5 O' _chem_comp.formula_weight 141.131 _chem_comp.id 0FU _chem_comp.mon_nstd_flag . _chem_comp.name 2,5,6-triaminopyrimidin-4-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 4-hydroxy-2,5,6-triaminopyrimidine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C5 0FU doub 1 n y N3 C4 0FU sing 2 n y C2 N1 0FU sing 3 n y C2 N3 0FU doub 4 n y NAA C2 0FU sing 5 n n N1 C6 0FU doub 6 n y C6 NAB 0FU sing 7 n n C6 C5 0FU sing 8 n y C5 NAC 0FU sing 9 n n C4 O4 0FU sing 10 n n NAA H1 0FU sing 11 n n NAA H2 0FU sing 12 n n NAB H3 0FU sing 13 n n NAB H4 0FU sing 14 n n NAC H7 0FU sing 15 n n NAC H8 0FU sing 16 n n O4 H71 0FU sing 17 n n # _atom_sites.entry_id 3V0R _atom_sites.fract_transf_matrix[1][1] 0.014282 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014282 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005578 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 201 1 SO4 SO4 . C 2 SO4 A 1 202 2 SO4 SO4 . D 2 SO4 A 1 203 4 SO4 SO4 . E 2 SO4 A 1 204 5 SO4 SO4 . F 3 UNX A 1 205 208 UNX HOH . G 3 UNX A 1 206 209 UNX HOH . H 3 UNX A 1 207 210 UNX HOH . I 3 UNX A 1 208 211 UNX HOH . J 4 0FU A 1 209 1 0FU 0FU . K 4 0FU A 1 210 1 0FU 0FU . L 5 8AC A 1 211 1 8AC 8AC . M 4 0FU A 1 212 1 0FU 0FU . N 6 HOH A 1 300 3 HOH HOH . N 6 HOH A 2 301 6 HOH HOH . N 6 HOH A 3 302 7 HOH HOH . N 6 HOH A 4 303 10 HOH HOH . N 6 HOH A 5 304 11 HOH HOH . N 6 HOH A 6 305 12 HOH HOH . N 6 HOH A 7 306 14 HOH HOH . N 6 HOH A 8 307 15 HOH HOH . N 6 HOH A 9 308 16 HOH HOH . N 6 HOH A 10 309 17 HOH HOH . N 6 HOH A 11 310 18 HOH HOH . N 6 HOH A 12 311 19 HOH HOH . N 6 HOH A 13 312 20 HOH HOH . N 6 HOH A 14 313 22 HOH HOH . N 6 HOH A 15 314 23 HOH HOH . N 6 HOH A 16 315 24 HOH HOH . N 6 HOH A 17 316 162 HOH HOH . N 6 HOH A 18 317 163 HOH HOH . N 6 HOH A 19 318 2 HOH HOH . N 6 HOH A 20 319 165 HOH HOH . N 6 HOH A 21 320 166 HOH HOH . N 6 HOH A 22 321 167 HOH HOH . N 6 HOH A 23 322 168 HOH HOH . N 6 HOH A 24 323 169 HOH HOH . N 6 HOH A 25 324 170 HOH HOH . N 6 HOH A 26 325 171 HOH HOH . N 6 HOH A 27 326 172 HOH HOH . N 6 HOH A 28 327 173 HOH HOH . N 6 HOH A 29 328 5 HOH HOH . N 6 HOH A 30 329 175 HOH HOH . N 6 HOH A 31 330 176 HOH HOH . N 6 HOH A 32 331 177 HOH HOH . N 6 HOH A 33 332 178 HOH HOH . N 6 HOH A 34 333 179 HOH HOH . N 6 HOH A 35 334 26 HOH HOH . N 6 HOH A 36 335 181 HOH HOH . N 6 HOH A 37 336 27 HOH HOH . N 6 HOH A 38 337 28 HOH HOH . N 6 HOH A 39 338 184 HOH HOH . N 6 HOH A 40 339 185 HOH HOH . N 6 HOH A 41 340 186 HOH HOH . N 6 HOH A 42 341 187 HOH HOH . N 6 HOH A 43 342 188 HOH HOH . N 6 HOH A 44 343 189 HOH HOH . N 6 HOH A 45 344 30 HOH HOH . N 6 HOH A 46 345 35 HOH HOH . N 6 HOH A 47 346 192 HOH HOH . N 6 HOH A 48 347 193 HOH HOH . N 6 HOH A 49 348 194 HOH HOH . N 6 HOH A 50 349 195 HOH HOH . N 6 HOH A 51 350 196 HOH HOH . N 6 HOH A 52 351 197 HOH HOH . N 6 HOH A 53 352 198 HOH HOH . N 6 HOH A 54 353 199 HOH HOH . N 6 HOH A 55 354 200 HOH HOH . N 6 HOH A 56 355 201 HOH HOH . N 6 HOH A 57 356 202 HOH HOH . N 6 HOH A 58 357 203 HOH HOH . N 6 HOH A 59 358 204 HOH HOH . N 6 HOH A 60 359 205 HOH HOH . N 6 HOH A 61 360 206 HOH HOH . N 6 HOH A 62 361 207 HOH HOH . N 6 HOH A 63 362 212 HOH HOH . N 6 HOH A 64 363 213 HOH HOH . N 6 HOH A 65 364 214 HOH HOH . N 6 HOH A 66 365 215 HOH HOH . N 6 HOH A 67 366 216 HOH HOH . N 6 HOH A 68 367 217 HOH HOH . N 6 HOH A 69 368 218 HOH HOH . N 6 HOH A 70 369 219 HOH HOH . N 6 HOH A 71 370 36 HOH HOH . N 6 HOH A 72 371 37 HOH HOH . N 6 HOH A 73 372 39 HOH HOH . N 6 HOH A 74 373 40 HOH HOH . N 6 HOH A 75 374 41 HOH HOH . N 6 HOH A 76 375 42 HOH HOH . N 6 HOH A 77 376 44 HOH HOH . N 6 HOH A 78 377 45 HOH HOH . N 6 HOH A 79 378 47 HOH HOH . N 6 HOH A 80 379 50 HOH HOH . N 6 HOH A 81 380 51 HOH HOH . N 6 HOH A 82 381 52 HOH HOH . N 6 HOH A 83 382 53 HOH HOH . N 6 HOH A 84 383 54 HOH HOH . N 6 HOH A 85 384 55 HOH HOH . N 6 HOH A 86 385 56 HOH HOH . N 6 HOH A 87 386 58 HOH HOH . N 6 HOH A 88 387 59 HOH HOH . N 6 HOH A 89 388 60 HOH HOH . N 6 HOH A 90 389 61 HOH HOH . N 6 HOH A 91 390 62 HOH HOH . N 6 HOH A 92 391 63 HOH HOH . N 6 HOH A 93 392 67 HOH HOH . N 6 HOH A 94 393 68 HOH HOH . N 6 HOH A 95 394 69 HOH HOH . N 6 HOH A 96 395 71 HOH HOH . N 6 HOH A 97 396 73 HOH HOH . N 6 HOH A 98 397 74 HOH HOH . N 6 HOH A 99 398 76 HOH HOH . N 6 HOH A 100 399 80 HOH HOH . N 6 HOH A 101 400 81 HOH HOH . N 6 HOH A 102 401 82 HOH HOH . N 6 HOH A 103 402 83 HOH HOH . N 6 HOH A 104 403 85 HOH HOH . N 6 HOH A 105 404 86 HOH HOH . N 6 HOH A 106 405 87 HOH HOH . N 6 HOH A 107 406 88 HOH HOH . N 6 HOH A 108 407 89 HOH HOH . N 6 HOH A 109 408 90 HOH HOH . N 6 HOH A 110 409 95 HOH HOH . N 6 HOH A 111 410 96 HOH HOH . N 6 HOH A 112 411 99 HOH HOH . N 6 HOH A 113 412 102 HOH HOH . N 6 HOH A 114 413 103 HOH HOH . N 6 HOH A 115 414 106 HOH HOH . N 6 HOH A 116 415 116 HOH HOH . N 6 HOH A 117 416 117 HOH HOH . N 6 HOH A 118 417 118 HOH HOH . N 6 HOH A 119 418 122 HOH HOH . N 6 HOH A 120 419 123 HOH HOH . N 6 HOH A 121 420 124 HOH HOH . N 6 HOH A 122 421 125 HOH HOH . N 6 HOH A 123 422 126 HOH HOH . N 6 HOH A 124 423 127 HOH HOH . N 6 HOH A 125 424 128 HOH HOH . N 6 HOH A 126 425 129 HOH HOH . N 6 HOH A 127 426 130 HOH HOH . N 6 HOH A 128 427 131 HOH HOH . N 6 HOH A 129 428 132 HOH HOH . N 6 HOH A 130 429 133 HOH HOH . N 6 HOH A 131 430 134 HOH HOH . N 6 HOH A 132 431 135 HOH HOH . N 6 HOH A 133 432 136 HOH HOH . N 6 HOH A 134 433 137 HOH HOH . N 6 HOH A 135 434 138 HOH HOH . N 6 HOH A 136 435 139 HOH HOH . N 6 HOH A 137 436 140 HOH HOH . N 6 HOH A 138 437 141 HOH HOH . N 6 HOH A 139 438 142 HOH HOH . N 6 HOH A 140 439 143 HOH HOH . N 6 HOH A 141 440 144 HOH HOH . N 6 HOH A 142 441 145 HOH HOH . N 6 HOH A 143 442 146 HOH HOH . N 6 HOH A 144 443 147 HOH HOH . N 6 HOH A 145 444 148 HOH HOH . N 6 HOH A 146 445 149 HOH HOH . N 6 HOH A 147 446 150 HOH HOH . N 6 HOH A 148 447 151 HOH HOH . N 6 HOH A 149 448 152 HOH HOH . N 6 HOH A 150 449 154 HOH HOH . N 6 HOH A 151 450 155 HOH HOH . N 6 HOH A 152 451 156 HOH HOH . N 6 HOH A 153 452 157 HOH HOH . N 6 HOH A 154 453 158 HOH HOH . N 6 HOH A 155 454 159 HOH HOH . N 6 HOH A 156 455 160 HOH HOH . N 6 HOH A 157 456 161 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 0FU . . . J 4 34.767 -0.664 18.316 0.5 49.76 ? C4 0FU 209 A 1 HETATM 2 N N3 0FU . . . J 4 34.656 -0.843 16.973 0.5 50.79 ? N3 0FU 209 A 1 HETATM 3 C C2 0FU . . . J 4 34.961 0.142 16.084 0.5 51.26 ? C2 0FU 209 A 1 HETATM 4 N NAA 0FU . . . J 4 34.83 -0.1 14.771 0.5 51.86 ? NAA 0FU 209 A 1 HETATM 5 N N1 0FU . . . J 4 35.396 1.353 16.495 0.5 47.42 ? N1 0FU 209 A 1 HETATM 6 C C6 0FU . . . J 4 35.524 1.588 17.833 0.5 45.36 ? C6 0FU 209 A 1 HETATM 7 N NAB 0FU . . . J 4 35.944 2.76 18.249 0.5 39.8 ? NAB 0FU 209 A 1 HETATM 8 C C5 0FU . . . J 4 35.212 0.582 18.791 0.5 47.25 ? C5 0FU 209 A 1 HETATM 9 N NAC 0FU . . . J 4 35.331 0.769 20.131 0.5 42.65 ? NAC 0FU 209 A 1 HETATM 10 O O4 0FU . . . J 4 34.456 -1.64 19.24 0.5 50.11 ? O4 0FU 209 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #