data_3V0R # _model_server_result.job_id xu7ImHsY6BC6V-zja90dhA _model_server_result.datetime_utc '2024-12-26 09:57:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3v0r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":211}' # _entry.id 3V0R # _exptl.entry_id 3V0R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 159.226 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '8-aminooctanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3V0R _cell.length_a 70.016 _cell.length_b 70.016 _cell.length_c 179.27 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3V0R _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N 1 1,2,3,4 A,B,C,D,E,F,G,H,I,J,K,L,M,N 2 1,5 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_545 y+1/2,x-1/2,-z+1/2 0 1 0 1 0 0 0 0 -1 35.008 -35.008 89.635 3 'crystal symmetry operation' 10_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 70.016 0 0 4 'crystal symmetry operation' 16_555 -y+1/2,-x+1/2,-z+1/2 0 -1 0 -1 0 0 0 0 -1 35.008 35.008 89.635 5 'crystal symmetry operation' 6_555 x,-y+1/2,-z+1/4 1 0 0 0 -1 0 0 0 -1 0 35.008 44.8175 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 30 1_555 A SG CYS 6 A CYS 30 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? disulf ? disulf2 A SG CYS 50 A CYS 74 1_555 A SG CYS 65 A CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? disulf ? disulf3 A SG CYS 104 A CYS 128 1_555 A SG CYS 116 A CYS 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? # _chem_comp.formula 'C8 H17 N O2' _chem_comp.formula_weight 159.226 _chem_comp.id 8AC _chem_comp.mon_nstd_flag . _chem_comp.name '8-aminooctanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '8-aminocaprylic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAD NAA 8AC sing 18 n n NAA HNAA 8AC sing 19 n n NAA HNAB 8AC sing 20 n n OAB CAK 8AC doub 21 n n CAK OAC 8AC sing 22 n n OAC HOAC 8AC sing 23 n n CAE CAD 8AC sing 24 n n CAD HAD 8AC sing 25 n n CAD HADA 8AC sing 26 n n CAE CAF 8AC sing 27 n n CAE HAE 8AC sing 28 n n CAE HAEA 8AC sing 29 n n CAF CAG 8AC sing 30 n n CAF HAF 8AC sing 31 n n CAF HAFA 8AC sing 32 n n CAH CAG 8AC sing 33 n n CAG HAG 8AC sing 34 n n CAG HAGA 8AC sing 35 n n CAH CAI 8AC sing 36 n n CAH HAH 8AC sing 37 n n CAH HAHA 8AC sing 38 n n CAJ CAI 8AC sing 39 n n CAI HAI 8AC sing 40 n n CAI HAIA 8AC sing 41 n n CAK CAJ 8AC sing 42 n n CAJ HAJ 8AC sing 43 n n CAJ HAJA 8AC sing 44 n n # _atom_sites.entry_id 3V0R _atom_sites.fract_transf_matrix[1][1] 0.014282 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014282 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005578 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 201 1 SO4 SO4 . C 2 SO4 A 1 202 2 SO4 SO4 . D 2 SO4 A 1 203 4 SO4 SO4 . E 2 SO4 A 1 204 5 SO4 SO4 . F 3 UNX A 1 205 208 UNX HOH . G 3 UNX A 1 206 209 UNX HOH . H 3 UNX A 1 207 210 UNX HOH . I 3 UNX A 1 208 211 UNX HOH . J 4 0FU A 1 209 1 0FU 0FU . K 4 0FU A 1 210 1 0FU 0FU . L 5 8AC A 1 211 1 8AC 8AC . M 4 0FU A 1 212 1 0FU 0FU . N 6 HOH A 1 300 3 HOH HOH . N 6 HOH A 2 301 6 HOH HOH . N 6 HOH A 3 302 7 HOH HOH . N 6 HOH A 4 303 10 HOH HOH . N 6 HOH A 5 304 11 HOH HOH . N 6 HOH A 6 305 12 HOH HOH . N 6 HOH A 7 306 14 HOH HOH . N 6 HOH A 8 307 15 HOH HOH . N 6 HOH A 9 308 16 HOH HOH . N 6 HOH A 10 309 17 HOH HOH . N 6 HOH A 11 310 18 HOH HOH . N 6 HOH A 12 311 19 HOH HOH . N 6 HOH A 13 312 20 HOH HOH . N 6 HOH A 14 313 22 HOH HOH . N 6 HOH A 15 314 23 HOH HOH . N 6 HOH A 16 315 24 HOH HOH . N 6 HOH A 17 316 162 HOH HOH . N 6 HOH A 18 317 163 HOH HOH . N 6 HOH A 19 318 2 HOH HOH . N 6 HOH A 20 319 165 HOH HOH . N 6 HOH A 21 320 166 HOH HOH . N 6 HOH A 22 321 167 HOH HOH . N 6 HOH A 23 322 168 HOH HOH . N 6 HOH A 24 323 169 HOH HOH . N 6 HOH A 25 324 170 HOH HOH . N 6 HOH A 26 325 171 HOH HOH . N 6 HOH A 27 326 172 HOH HOH . N 6 HOH A 28 327 173 HOH HOH . N 6 HOH A 29 328 5 HOH HOH . N 6 HOH A 30 329 175 HOH HOH . N 6 HOH A 31 330 176 HOH HOH . N 6 HOH A 32 331 177 HOH HOH . N 6 HOH A 33 332 178 HOH HOH . N 6 HOH A 34 333 179 HOH HOH . N 6 HOH A 35 334 26 HOH HOH . N 6 HOH A 36 335 181 HOH HOH . N 6 HOH A 37 336 27 HOH HOH . N 6 HOH A 38 337 28 HOH HOH . N 6 HOH A 39 338 184 HOH HOH . N 6 HOH A 40 339 185 HOH HOH . N 6 HOH A 41 340 186 HOH HOH . N 6 HOH A 42 341 187 HOH HOH . N 6 HOH A 43 342 188 HOH HOH . N 6 HOH A 44 343 189 HOH HOH . N 6 HOH A 45 344 30 HOH HOH . N 6 HOH A 46 345 35 HOH HOH . N 6 HOH A 47 346 192 HOH HOH . N 6 HOH A 48 347 193 HOH HOH . N 6 HOH A 49 348 194 HOH HOH . N 6 HOH A 50 349 195 HOH HOH . N 6 HOH A 51 350 196 HOH HOH . N 6 HOH A 52 351 197 HOH HOH . N 6 HOH A 53 352 198 HOH HOH . N 6 HOH A 54 353 199 HOH HOH . N 6 HOH A 55 354 200 HOH HOH . N 6 HOH A 56 355 201 HOH HOH . N 6 HOH A 57 356 202 HOH HOH . N 6 HOH A 58 357 203 HOH HOH . N 6 HOH A 59 358 204 HOH HOH . N 6 HOH A 60 359 205 HOH HOH . N 6 HOH A 61 360 206 HOH HOH . N 6 HOH A 62 361 207 HOH HOH . N 6 HOH A 63 362 212 HOH HOH . N 6 HOH A 64 363 213 HOH HOH . N 6 HOH A 65 364 214 HOH HOH . N 6 HOH A 66 365 215 HOH HOH . N 6 HOH A 67 366 216 HOH HOH . N 6 HOH A 68 367 217 HOH HOH . N 6 HOH A 69 368 218 HOH HOH . N 6 HOH A 70 369 219 HOH HOH . N 6 HOH A 71 370 36 HOH HOH . N 6 HOH A 72 371 37 HOH HOH . N 6 HOH A 73 372 39 HOH HOH . N 6 HOH A 74 373 40 HOH HOH . N 6 HOH A 75 374 41 HOH HOH . N 6 HOH A 76 375 42 HOH HOH . N 6 HOH A 77 376 44 HOH HOH . N 6 HOH A 78 377 45 HOH HOH . N 6 HOH A 79 378 47 HOH HOH . N 6 HOH A 80 379 50 HOH HOH . N 6 HOH A 81 380 51 HOH HOH . N 6 HOH A 82 381 52 HOH HOH . N 6 HOH A 83 382 53 HOH HOH . N 6 HOH A 84 383 54 HOH HOH . N 6 HOH A 85 384 55 HOH HOH . N 6 HOH A 86 385 56 HOH HOH . N 6 HOH A 87 386 58 HOH HOH . N 6 HOH A 88 387 59 HOH HOH . N 6 HOH A 89 388 60 HOH HOH . N 6 HOH A 90 389 61 HOH HOH . N 6 HOH A 91 390 62 HOH HOH . N 6 HOH A 92 391 63 HOH HOH . N 6 HOH A 93 392 67 HOH HOH . N 6 HOH A 94 393 68 HOH HOH . N 6 HOH A 95 394 69 HOH HOH . N 6 HOH A 96 395 71 HOH HOH . N 6 HOH A 97 396 73 HOH HOH . N 6 HOH A 98 397 74 HOH HOH . N 6 HOH A 99 398 76 HOH HOH . N 6 HOH A 100 399 80 HOH HOH . N 6 HOH A 101 400 81 HOH HOH . N 6 HOH A 102 401 82 HOH HOH . N 6 HOH A 103 402 83 HOH HOH . N 6 HOH A 104 403 85 HOH HOH . N 6 HOH A 105 404 86 HOH HOH . N 6 HOH A 106 405 87 HOH HOH . N 6 HOH A 107 406 88 HOH HOH . N 6 HOH A 108 407 89 HOH HOH . N 6 HOH A 109 408 90 HOH HOH . N 6 HOH A 110 409 95 HOH HOH . N 6 HOH A 111 410 96 HOH HOH . N 6 HOH A 112 411 99 HOH HOH . N 6 HOH A 113 412 102 HOH HOH . N 6 HOH A 114 413 103 HOH HOH . N 6 HOH A 115 414 106 HOH HOH . N 6 HOH A 116 415 116 HOH HOH . N 6 HOH A 117 416 117 HOH HOH . N 6 HOH A 118 417 118 HOH HOH . N 6 HOH A 119 418 122 HOH HOH . N 6 HOH A 120 419 123 HOH HOH . N 6 HOH A 121 420 124 HOH HOH . N 6 HOH A 122 421 125 HOH HOH . N 6 HOH A 123 422 126 HOH HOH . N 6 HOH A 124 423 127 HOH HOH . N 6 HOH A 125 424 128 HOH HOH . N 6 HOH A 126 425 129 HOH HOH . N 6 HOH A 127 426 130 HOH HOH . N 6 HOH A 128 427 131 HOH HOH . N 6 HOH A 129 428 132 HOH HOH . N 6 HOH A 130 429 133 HOH HOH . N 6 HOH A 131 430 134 HOH HOH . N 6 HOH A 132 431 135 HOH HOH . N 6 HOH A 133 432 136 HOH HOH . N 6 HOH A 134 433 137 HOH HOH . N 6 HOH A 135 434 138 HOH HOH . N 6 HOH A 136 435 139 HOH HOH . N 6 HOH A 137 436 140 HOH HOH . N 6 HOH A 138 437 141 HOH HOH . N 6 HOH A 139 438 142 HOH HOH . N 6 HOH A 140 439 143 HOH HOH . N 6 HOH A 141 440 144 HOH HOH . N 6 HOH A 142 441 145 HOH HOH . N 6 HOH A 143 442 146 HOH HOH . N 6 HOH A 144 443 147 HOH HOH . N 6 HOH A 145 444 148 HOH HOH . N 6 HOH A 146 445 149 HOH HOH . N 6 HOH A 147 446 150 HOH HOH . N 6 HOH A 148 447 151 HOH HOH . N 6 HOH A 149 448 152 HOH HOH . N 6 HOH A 150 449 154 HOH HOH . N 6 HOH A 151 450 155 HOH HOH . N 6 HOH A 152 451 156 HOH HOH . N 6 HOH A 153 452 157 HOH HOH . N 6 HOH A 154 453 158 HOH HOH . N 6 HOH A 155 454 159 HOH HOH . N 6 HOH A 156 455 160 HOH HOH . N 6 HOH A 157 456 161 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N NAA 8AC . . . L 5 30.575 -1.564 13.97 1 65.05 ? NAA 8AC 211 A 1 HETATM 2 O OAB 8AC . . . L 5 33.214 4.568 21.692 1 46.75 ? OAB 8AC 211 A 1 HETATM 3 O OAC 8AC . . . L 5 33.212 2.769 22.851 1 48.21 ? OAC 8AC 211 A 1 HETATM 4 C CAD 8AC . . . L 5 30.962 -1.372 15.375 1 63.08 ? CAD 8AC 211 A 1 HETATM 5 C CAE 8AC . . . L 5 30.35 -0.081 15.873 1 59.16 ? CAE 8AC 211 A 1 HETATM 6 C CAF 8AC . . . L 5 30.153 -0.084 17.376 1 51.84 ? CAF 8AC 211 A 1 HETATM 7 C CAG 8AC . . . L 5 31.276 0.762 17.992 1 47.85 ? CAG 8AC 211 A 1 HETATM 8 C CAH 8AC . . . L 5 30.824 1.474 19.215 1 45.98 ? CAH 8AC 211 A 1 HETATM 9 C CAI 8AC . . . L 5 32.067 2.029 19.97 1 48.87 ? CAI 8AC 211 A 1 HETATM 10 C CAJ 8AC . . . L 5 31.627 3.029 21.014 1 43.91 ? CAJ 8AC 211 A 1 HETATM 11 C CAK 8AC . . . L 5 32.795 3.458 21.926 1 45.23 ? CAK 8AC 211 A 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 11 #