data_3V0T # _model_server_result.job_id eeHucPAA_QK8_jy4dPXoPw _model_server_result.datetime_utc '2024-11-13 07:34:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3v0t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":338}' # _entry.id 3V0T # _exptl.entry_id 3V0T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2'-MONOPHOSPHOADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3V0T _cell.length_a 54.501 _cell.length_b 54.501 _cell.length_c 200.358 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3V0T _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATR _chem_comp.mon_nstd_flag . _chem_comp.name "2'-MONOPHOSPHOADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ATR doub 70 n n PB O2B ATR sing 71 n n PB O3B ATR sing 72 n n PB O3A ATR sing 73 n n O2B HOB2 ATR sing 74 n n O3B HOB3 ATR sing 75 n n PA O1A ATR doub 76 n n PA O2A ATR sing 77 n n PA O3A ATR sing 78 n n PA O5' ATR sing 79 n n O2A HOA2 ATR sing 80 n n O5' C5' ATR sing 81 n n C5' C4' ATR sing 82 n n C5' "H5'1" ATR sing 83 n n C5' "H5'2" ATR sing 84 n n C4' O4' ATR sing 85 n n C4' C3' ATR sing 86 n n C4' H4' ATR sing 87 n n O4' C1' ATR sing 88 n n C3' O3' ATR sing 89 n n C3' C2' ATR sing 90 n n C3' H3' ATR sing 91 n n O3' HO3' ATR sing 92 n n C2' O2' ATR sing 93 n n C2' C1' ATR sing 94 n n C2' H2' ATR sing 95 n n O2' P2' ATR sing 96 n n P2' O1P ATR doub 97 n n P2' O2P ATR sing 98 n n P2' O3P ATR sing 99 n n O2P HOP2 ATR sing 100 n n O3P HOP3 ATR sing 101 n n C1' N9 ATR sing 102 n n C1' H1' ATR sing 103 n n N9 C8 ATR sing 104 n y N9 C4 ATR sing 105 n y C8 N7 ATR doub 106 n y C8 H8 ATR sing 107 n n N7 C5 ATR sing 108 n y C5 C6 ATR sing 109 n y C5 C4 ATR doub 110 n y C6 N6 ATR sing 111 n n C6 N1 ATR doub 112 n y N6 HN61 ATR sing 113 n n N6 HN62 ATR sing 114 n n N1 C2 ATR sing 115 n y C2 N3 ATR doub 116 n y C2 H2 ATR sing 117 n n N3 C4 ATR sing 118 n y # _atom_sites.entry_id 3V0T _atom_sites.fract_transf_matrix[1][1] 0.018348 _atom_sites.fract_transf_matrix[1][2] 0.010593 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021187 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004991 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATR A 1 338 1 ATR ATR . C 3 HOH A 1 339 1 HOH HOH . C 3 HOH A 2 340 2 HOH HOH . C 3 HOH A 3 341 3 HOH HOH . C 3 HOH A 4 342 4 HOH HOH . C 3 HOH A 5 343 5 HOH HOH . C 3 HOH A 6 344 6 HOH HOH . C 3 HOH A 7 345 7 HOH HOH . C 3 HOH A 8 346 8 HOH HOH . C 3 HOH A 9 347 9 HOH HOH . C 3 HOH A 10 348 10 HOH HOH . C 3 HOH A 11 349 11 HOH HOH . C 3 HOH A 12 350 12 HOH HOH . C 3 HOH A 13 351 13 HOH HOH . C 3 HOH A 14 352 14 HOH HOH . C 3 HOH A 15 353 15 HOH HOH . C 3 HOH A 16 354 16 HOH HOH . C 3 HOH A 17 355 17 HOH HOH . C 3 HOH A 18 356 18 HOH HOH . C 3 HOH A 19 357 19 HOH HOH . C 3 HOH A 20 358 20 HOH HOH . C 3 HOH A 21 359 21 HOH HOH . C 3 HOH A 22 360 22 HOH HOH . C 3 HOH A 23 361 23 HOH HOH . C 3 HOH A 24 362 24 HOH HOH . C 3 HOH A 25 363 25 HOH HOH . C 3 HOH A 26 364 26 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ATR . . . B 2 21.836 7.056 21.766 1 58.93 ? PB ATR 338 A 1 HETATM 2 O O1B ATR . . . B 2 23.002 7.119 22.726 1 51.77 ? O1B ATR 338 A 1 HETATM 3 O O2B ATR . . . B 2 21.766 5.684 21.139 1 64.7 ? O2B ATR 338 A 1 HETATM 4 O O3B ATR . . . B 2 20.542 7.346 22.486 1 58.16 ? O3B ATR 338 A 1 HETATM 5 P PA ATR . . . B 2 22.746 7.968 19.338 1 38.39 ? PA ATR 338 A 1 HETATM 6 O O1A ATR . . . B 2 21.885 8.162 18.036 1 37.98 ? O1A ATR 338 A 1 HETATM 7 O O2A ATR . . . B 2 24.298 8.031 19.23 1 32.27 ? O2A ATR 338 A 1 HETATM 8 O O3A ATR . . . B 2 22.025 8.168 20.707 1 65.36 ? O3A ATR 338 A 1 HETATM 9 O O5' ATR . . . B 2 22.79 9.553 19.46 1 37.9 ? O5' ATR 338 A 1 HETATM 10 C C5' ATR . . . B 2 21.644 10.315 19.716 1 28.45 ? C5' ATR 338 A 1 HETATM 11 C C4' ATR . . . B 2 21.747 11.614 20.471 1 39.83 ? C4' ATR 338 A 1 HETATM 12 O O4' ATR . . . B 2 22.676 12.522 19.933 1 37.66 ? O4' ATR 338 A 1 HETATM 13 C C3' ATR . . . B 2 20.454 12.416 20.582 1 45.4 ? C3' ATR 338 A 1 HETATM 14 O O3' ATR . . . B 2 20.394 12.966 21.85 1 40.95 ? O3' ATR 338 A 1 HETATM 15 C C2' ATR . . . B 2 20.54 13.453 19.613 1 48.09 ? C2' ATR 338 A 1 HETATM 16 O O2' ATR . . . B 2 19.919 14.608 20.083 1 44.4 ? O2' ATR 338 A 1 HETATM 17 P P2' ATR . . . B 2 19.128 15.568 19.123 1 40.12 ? P2' ATR 338 A 1 HETATM 18 O O1P ATR . . . B 2 17.752 15.002 18.824 1 36.22 ? O1P ATR 338 A 1 HETATM 19 O O2P ATR . . . B 2 19.897 15.753 17.828 1 37.63 ? O2P ATR 338 A 1 HETATM 20 O O3P ATR . . . B 2 18.953 16.921 19.797 1 47.43 ? O3P ATR 338 A 1 HETATM 21 C C1' ATR . . . B 2 21.998 13.706 19.515 1 44.75 ? C1' ATR 338 A 1 HETATM 22 N N9 ATR . . . B 2 22.465 14.079 18.215 1 48.95 ? N9 ATR 338 A 1 HETATM 23 C C8 ATR . . . B 2 22.219 13.477 17.035 1 44.46 ? C8 ATR 338 A 1 HETATM 24 N N7 ATR . . . B 2 22.892 14.128 16.069 1 39.29 ? N7 ATR 338 A 1 HETATM 25 C C5 ATR . . . B 2 23.58 15.145 16.639 1 46.22 ? C5 ATR 338 A 1 HETATM 26 C C6 ATR . . . B 2 24.433 16.128 16.135 1 40.91 ? C6 ATR 338 A 1 HETATM 27 N N6 ATR . . . B 2 24.739 16.198 14.739 1 35.98 ? N6 ATR 338 A 1 HETATM 28 N N1 ATR . . . B 2 24.972 17.009 16.991 1 44.87 ? N1 ATR 338 A 1 HETATM 29 C C2 ATR . . . B 2 24.704 16.959 18.309 1 45.05 ? C2 ATR 338 A 1 HETATM 30 N N3 ATR . . . B 2 23.882 16.019 18.8 1 45.91 ? N3 ATR 338 A 1 HETATM 31 C C4 ATR . . . B 2 23.31 15.106 17.995 1 47.9 ? C4 ATR 338 A 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 232 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 31 #