data_3V0X # _model_server_result.job_id vOTt2rbrcYNcJkQpIfduGw _model_server_result.datetime_utc '2024-12-02 12:07:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3v0x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":483}' # _entry.id 3V0X # _exptl.entry_id 3V0X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3V0X _cell.length_a 54.494 _cell.length_b 57.478 _cell.length_c 67.003 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3V0X _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 137 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? disulf ? disulf2 A SG CYS 25 A CYS 42 1_555 A SG CYS 41 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? disulf ? disulf3 A SG CYS 109 A CYS 128 1_555 A SG CYS 210 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf4 A SG CYS 116 A CYS 136 1_555 A SG CYS 183 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? disulf ? disulf5 A SG CYS 148 A CYS 168 1_555 A SG CYS 162 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf6 A SG CYS 173 A CYS 191 1_555 A SG CYS 197 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? covale ? covale1 A C LEU 96 A LEU 114 1_555 A N DSG 97 A DSG 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale2 A C DSG 97 A DSG 115 1_555 A N SER 98 A SER 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? metalc ? metalc1 E O HOH . A HOH 4 1_555 B CA CA . A CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc2 A OE1 GLU 52 A GLU 70 1_555 B CA CA . A CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc3 A O ASN 54 A ASN 72 1_555 B CA CA . A CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc4 A O VAL 57 A VAL 75 1_555 B CA CA . A CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc5 A OE2 GLU 62 A GLU 80 1_555 B CA CA . A CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc6 E O HOH . A HOH 395 1_555 B CA CA . A CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 200 n n C1 C2 GOL sing 201 n n C1 H11 GOL sing 202 n n C1 H12 GOL sing 203 n n O1 HO1 GOL sing 204 n n C2 O2 GOL sing 205 n n C2 C3 GOL sing 206 n n C2 H2 GOL sing 207 n n O2 HO2 GOL sing 208 n n C3 O3 GOL sing 209 n n C3 H31 GOL sing 210 n n C3 H32 GOL sing 211 n n O3 HO3 GOL sing 212 n n # _atom_sites.entry_id 3V0X _atom_sites.fract_transf_matrix[1][1] 0.018351 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017398 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014925 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 480 480 CA CA . C 3 ANH A 1 481 481 ANH ANH . D 4 GOL A 1 483 483 GOL GOL . E 5 HOH A 1 1 1 HOH HOH . E 5 HOH A 2 2 2 HOH HOH . E 5 HOH A 3 3 3 HOH HOH . E 5 HOH A 4 4 4 HOH HOH . E 5 HOH A 5 5 5 HOH HOH . E 5 HOH A 6 6 6 HOH HOH . E 5 HOH A 7 7 7 HOH HOH . E 5 HOH A 8 9 9 HOH HOH . E 5 HOH A 9 10 10 HOH HOH . E 5 HOH A 10 11 11 HOH HOH . E 5 HOH A 11 12 12 HOH HOH . E 5 HOH A 12 13 13 HOH HOH . E 5 HOH A 13 14 14 HOH HOH . E 5 HOH A 14 15 15 HOH HOH . E 5 HOH A 15 246 23 HOH HOH . E 5 HOH A 16 247 24 HOH HOH . E 5 HOH A 17 248 25 HOH HOH . E 5 HOH A 18 249 26 HOH HOH . E 5 HOH A 19 250 27 HOH HOH . E 5 HOH A 20 251 28 HOH HOH . E 5 HOH A 21 252 29 HOH HOH . E 5 HOH A 22 253 30 HOH HOH . E 5 HOH A 23 254 31 HOH HOH . E 5 HOH A 24 255 32 HOH HOH . E 5 HOH A 25 256 33 HOH HOH . E 5 HOH A 26 257 34 HOH HOH . E 5 HOH A 27 258 36 HOH HOH . E 5 HOH A 28 259 37 HOH HOH . E 5 HOH A 29 260 38 HOH HOH . E 5 HOH A 30 261 39 HOH HOH . E 5 HOH A 31 262 40 HOH HOH . E 5 HOH A 32 263 41 HOH HOH . E 5 HOH A 33 264 42 HOH HOH . E 5 HOH A 34 265 43 HOH HOH . E 5 HOH A 35 266 44 HOH HOH . E 5 HOH A 36 267 45 HOH HOH . E 5 HOH A 37 268 46 HOH HOH . E 5 HOH A 38 269 47 HOH HOH . E 5 HOH A 39 270 48 HOH HOH . E 5 HOH A 40 271 49 HOH HOH . E 5 HOH A 41 272 50 HOH HOH . E 5 HOH A 42 273 51 HOH HOH . E 5 HOH A 43 274 52 HOH HOH . E 5 HOH A 44 275 53 HOH HOH . E 5 HOH A 45 276 54 HOH HOH . E 5 HOH A 46 277 55 HOH HOH . E 5 HOH A 47 278 56 HOH HOH . E 5 HOH A 48 279 57 HOH HOH . E 5 HOH A 49 280 58 HOH HOH . E 5 HOH A 50 281 59 HOH HOH . E 5 HOH A 51 282 60 HOH HOH . E 5 HOH A 52 283 62 HOH HOH . E 5 HOH A 53 284 63 HOH HOH . E 5 HOH A 54 285 64 HOH HOH . E 5 HOH A 55 286 65 HOH HOH . E 5 HOH A 56 287 66 HOH HOH . E 5 HOH A 57 288 67 HOH HOH . E 5 HOH A 58 289 68 HOH HOH . E 5 HOH A 59 290 69 HOH HOH . E 5 HOH A 60 291 70 HOH HOH . E 5 HOH A 61 292 71 HOH HOH . E 5 HOH A 62 293 72 HOH HOH . E 5 HOH A 63 294 73 HOH HOH . E 5 HOH A 64 295 74 HOH HOH . E 5 HOH A 65 296 75 HOH HOH . E 5 HOH A 66 297 76 HOH HOH . E 5 HOH A 67 298 77 HOH HOH . E 5 HOH A 68 299 78 HOH HOH . E 5 HOH A 69 300 79 HOH HOH . E 5 HOH A 70 301 80 HOH HOH . E 5 HOH A 71 302 81 HOH HOH . E 5 HOH A 72 303 82 HOH HOH . E 5 HOH A 73 304 83 HOH HOH . E 5 HOH A 74 305 84 HOH HOH . E 5 HOH A 75 306 85 HOH HOH . E 5 HOH A 76 307 86 HOH HOH . E 5 HOH A 77 308 87 HOH HOH . E 5 HOH A 78 309 88 HOH HOH . E 5 HOH A 79 310 89 HOH HOH . E 5 HOH A 80 311 90 HOH HOH . E 5 HOH A 81 312 91 HOH HOH . E 5 HOH A 82 313 92 HOH HOH . E 5 HOH A 83 314 93 HOH HOH . E 5 HOH A 84 315 94 HOH HOH . E 5 HOH A 85 316 95 HOH HOH . E 5 HOH A 86 317 96 HOH HOH . E 5 HOH A 87 318 97 HOH HOH . E 5 HOH A 88 319 98 HOH HOH . E 5 HOH A 89 320 99 HOH HOH . E 5 HOH A 90 321 100 HOH HOH . E 5 HOH A 91 322 101 HOH HOH . E 5 HOH A 92 323 102 HOH HOH . E 5 HOH A 93 324 103 HOH HOH . E 5 HOH A 94 325 104 HOH HOH . E 5 HOH A 95 326 106 HOH HOH . E 5 HOH A 96 327 107 HOH HOH . E 5 HOH A 97 328 108 HOH HOH . E 5 HOH A 98 329 109 HOH HOH . E 5 HOH A 99 330 110 HOH HOH . E 5 HOH A 100 331 111 HOH HOH . E 5 HOH A 101 332 112 HOH HOH . E 5 HOH A 102 333 113 HOH HOH . E 5 HOH A 103 334 114 HOH HOH . E 5 HOH A 104 335 115 HOH HOH . E 5 HOH A 105 336 116 HOH HOH . E 5 HOH A 106 337 117 HOH HOH . E 5 HOH A 107 338 118 HOH HOH . E 5 HOH A 108 339 119 HOH HOH . E 5 HOH A 109 340 120 HOH HOH . E 5 HOH A 110 341 121 HOH HOH . E 5 HOH A 111 342 122 HOH HOH . E 5 HOH A 112 343 123 HOH HOH . E 5 HOH A 113 344 124 HOH HOH . E 5 HOH A 114 345 125 HOH HOH . E 5 HOH A 115 346 126 HOH HOH . E 5 HOH A 116 347 127 HOH HOH . E 5 HOH A 117 348 128 HOH HOH . E 5 HOH A 118 349 129 HOH HOH . E 5 HOH A 119 350 130 HOH HOH . E 5 HOH A 120 351 131 HOH HOH . E 5 HOH A 121 352 132 HOH HOH . E 5 HOH A 122 353 134 HOH HOH . E 5 HOH A 123 354 135 HOH HOH . E 5 HOH A 124 355 136 HOH HOH . E 5 HOH A 125 356 137 HOH HOH . E 5 HOH A 126 357 138 HOH HOH . E 5 HOH A 127 358 139 HOH HOH . E 5 HOH A 128 359 140 HOH HOH . E 5 HOH A 129 360 141 HOH HOH . E 5 HOH A 130 361 142 HOH HOH . E 5 HOH A 131 362 143 HOH HOH . E 5 HOH A 132 363 144 HOH HOH . E 5 HOH A 133 364 145 HOH HOH . E 5 HOH A 134 365 146 HOH HOH . E 5 HOH A 135 366 147 HOH HOH . E 5 HOH A 136 367 148 HOH HOH . E 5 HOH A 137 368 149 HOH HOH . E 5 HOH A 138 369 150 HOH HOH . E 5 HOH A 139 370 151 HOH HOH . E 5 HOH A 140 371 152 HOH HOH . E 5 HOH A 141 372 154 HOH HOH . E 5 HOH A 142 373 155 HOH HOH . E 5 HOH A 143 374 156 HOH HOH . E 5 HOH A 144 375 157 HOH HOH . E 5 HOH A 145 376 158 HOH HOH . E 5 HOH A 146 377 159 HOH HOH . E 5 HOH A 147 378 160 HOH HOH . E 5 HOH A 148 379 161 HOH HOH . E 5 HOH A 149 380 162 HOH HOH . E 5 HOH A 150 381 163 HOH HOH . E 5 HOH A 151 382 164 HOH HOH . E 5 HOH A 152 383 165 HOH HOH . E 5 HOH A 153 384 166 HOH HOH . E 5 HOH A 154 385 167 HOH HOH . E 5 HOH A 155 386 168 HOH HOH . E 5 HOH A 156 387 169 HOH HOH . E 5 HOH A 157 388 170 HOH HOH . E 5 HOH A 158 389 171 HOH HOH . E 5 HOH A 159 390 172 HOH HOH . E 5 HOH A 160 391 173 HOH HOH . E 5 HOH A 161 392 174 HOH HOH . E 5 HOH A 162 393 176 HOH HOH . E 5 HOH A 163 394 16 HOH HOH . E 5 HOH A 164 395 17 HOH HOH . E 5 HOH A 165 396 18 HOH HOH . E 5 HOH A 166 397 19 HOH HOH . E 5 HOH A 167 398 20 HOH HOH . E 5 HOH A 168 399 21 HOH HOH . E 5 HOH A 169 400 22 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 -7.204 -23.892 11.078 1 27.54 ? C1 GOL 483 A 1 HETATM 2 O O1 GOL . . . D 4 -8.087 -22.931 11.63 1 28.49 ? O1 GOL 483 A 1 HETATM 3 C C2 GOL . . . D 4 -5.775 -23.551 11.469 1 25.85 ? C2 GOL 483 A 1 HETATM 4 O O2 GOL . . . D 4 -5.545 -24.052 12.779 1 27.56 ? O2 GOL 483 A 1 HETATM 5 C C3 GOL . . . D 4 -4.842 -24.27 10.5 1 25.73 ? C3 GOL 483 A 1 HETATM 6 O O3 GOL . . . D 4 -3.485 -24.191 10.939 1 20.84 ? O3 GOL 483 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #