data_3V14 # _model_server_result.job_id peLlemGWHYb5WBdau4uBBQ _model_server_result.datetime_utc '2024-10-22 15:47:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3v14 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":249}' # _entry.id 3V14 # _exptl.entry_id 3V14 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3V14 _cell.length_a 130.204 _cell.length_b 130.204 _cell.length_c 40.148 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3V14 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 1 _pdbx_entity_branch_link.entity_branch_list_num_2 2 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O1 _pdbx_entity_branch_link.leaving_atom_id_2 HO1 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B GLC 1 B 1 GLC B 7347 TRE 2 n B GLC 2 B 2 GLC B 7347 TRE # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A ND2 ASN 227 A ASN 227 1_555 C C1 NAG . A NAG 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale2 B C1 GLC . B GLC 1 1_555 B O1 GLC . B GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.384 sing # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 140 n n C1 C2 GOL sing 141 n n C1 H11 GOL sing 142 n n C1 H12 GOL sing 143 n n O1 HO1 GOL sing 144 n n C2 O2 GOL sing 145 n n C2 C3 GOL sing 146 n n C2 H2 GOL sing 147 n n O2 HO2 GOL sing 148 n n C3 O3 GOL sing 149 n n C3 H31 GOL sing 150 n n C3 H32 GOL sing 151 n n O3 HO3 GOL sing 152 n n # _atom_sites.entry_id 3V14 _atom_sites.fract_transf_matrix[1][1] 0.00768 _atom_sites.fract_transf_matrix[1][2] 0.004434 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008868 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024908 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 247 247 NAG NAG . D 4 GOL A 1 249 249 GOL GOL . E 5 HOH A 1 251 251 HOH HOH . E 5 HOH A 2 252 252 HOH HOH . E 5 HOH A 3 253 253 HOH HOH . E 5 HOH A 4 254 254 HOH HOH . E 5 HOH A 5 255 255 HOH HOH . E 5 HOH A 6 256 256 HOH HOH . E 5 HOH A 7 257 257 HOH HOH . E 5 HOH A 8 258 258 HOH HOH . E 5 HOH A 9 259 259 HOH HOH . E 5 HOH A 10 260 260 HOH HOH . E 5 HOH A 11 261 261 HOH HOH . E 5 HOH A 12 262 262 HOH HOH . E 5 HOH A 13 264 264 HOH HOH . E 5 HOH A 14 265 265 HOH HOH . E 5 HOH A 15 266 266 HOH HOH . E 5 HOH A 16 267 267 HOH HOH . E 5 HOH A 17 268 268 HOH HOH . E 5 HOH A 18 269 269 HOH HOH . E 5 HOH A 19 270 270 HOH HOH . E 5 HOH A 20 271 271 HOH HOH . E 5 HOH A 21 272 272 HOH HOH . E 5 HOH A 22 273 273 HOH HOH . E 5 HOH A 23 274 274 HOH HOH . E 5 HOH A 24 275 275 HOH HOH . E 5 HOH A 25 276 276 HOH HOH . E 5 HOH A 26 277 277 HOH HOH . E 5 HOH A 27 278 278 HOH HOH . E 5 HOH A 28 279 279 HOH HOH . E 5 HOH A 29 280 280 HOH HOH . E 5 HOH A 30 281 281 HOH HOH . E 5 HOH A 31 282 282 HOH HOH . E 5 HOH A 32 283 283 HOH HOH . E 5 HOH A 33 285 285 HOH HOH . E 5 HOH A 34 286 286 HOH HOH . E 5 HOH A 35 287 287 HOH HOH . E 5 HOH A 36 288 288 HOH HOH . E 5 HOH A 37 289 289 HOH HOH . E 5 HOH A 38 290 290 HOH HOH . E 5 HOH A 39 291 291 HOH HOH . E 5 HOH A 40 292 292 HOH HOH . E 5 HOH A 41 293 293 HOH HOH . E 5 HOH A 42 294 294 HOH HOH . E 5 HOH A 43 295 295 HOH HOH . E 5 HOH A 44 296 296 HOH HOH . E 5 HOH A 45 297 297 HOH HOH . E 5 HOH A 46 298 298 HOH HOH . E 5 HOH A 47 299 299 HOH HOH . E 5 HOH A 48 300 300 HOH HOH . E 5 HOH A 49 301 301 HOH HOH . E 5 HOH A 50 302 302 HOH HOH . E 5 HOH A 51 303 303 HOH HOH . E 5 HOH A 52 304 304 HOH HOH . E 5 HOH A 53 306 306 HOH HOH . E 5 HOH A 54 307 307 HOH HOH . E 5 HOH A 55 308 308 HOH HOH . E 5 HOH A 56 309 309 HOH HOH . E 5 HOH A 57 310 310 HOH HOH . E 5 HOH A 58 311 311 HOH HOH . E 5 HOH A 59 312 312 HOH HOH . E 5 HOH A 60 313 313 HOH HOH . E 5 HOH A 61 314 314 HOH HOH . E 5 HOH A 62 315 315 HOH HOH . E 5 HOH A 63 316 316 HOH HOH . E 5 HOH A 64 317 317 HOH HOH . E 5 HOH A 65 318 318 HOH HOH . E 5 HOH A 66 319 319 HOH HOH . E 5 HOH A 67 320 320 HOH HOH . E 5 HOH A 68 321 321 HOH HOH . E 5 HOH A 69 322 322 HOH HOH . E 5 HOH A 70 323 323 HOH HOH . E 5 HOH A 71 324 324 HOH HOH . E 5 HOH A 72 325 325 HOH HOH . E 5 HOH A 73 326 326 HOH HOH . E 5 HOH A 74 327 327 HOH HOH . E 5 HOH A 75 328 328 HOH HOH . E 5 HOH A 76 329 329 HOH HOH . E 5 HOH A 77 330 330 HOH HOH . E 5 HOH A 78 331 331 HOH HOH . E 5 HOH A 79 332 332 HOH HOH . E 5 HOH A 80 333 333 HOH HOH . E 5 HOH A 81 334 334 HOH HOH . E 5 HOH A 82 335 335 HOH HOH . E 5 HOH A 83 336 336 HOH HOH . E 5 HOH A 84 337 337 HOH HOH . E 5 HOH A 85 338 338 HOH HOH . E 5 HOH A 86 339 339 HOH HOH . E 5 HOH A 87 340 340 HOH HOH . E 5 HOH A 88 341 341 HOH HOH . E 5 HOH A 89 342 342 HOH HOH . E 5 HOH A 90 343 343 HOH HOH . E 5 HOH A 91 344 344 HOH HOH . E 5 HOH A 92 345 345 HOH HOH . E 5 HOH A 93 346 346 HOH HOH . E 5 HOH A 94 347 347 HOH HOH . E 5 HOH A 95 348 348 HOH HOH . E 5 HOH A 96 349 349 HOH HOH . E 5 HOH A 97 350 350 HOH HOH . E 5 HOH A 98 351 351 HOH HOH . E 5 HOH A 99 352 352 HOH HOH . E 5 HOH A 100 353 353 HOH HOH . E 5 HOH A 101 354 354 HOH HOH . E 5 HOH A 102 355 355 HOH HOH . E 5 HOH A 103 356 356 HOH HOH . E 5 HOH A 104 357 357 HOH HOH . E 5 HOH A 105 358 358 HOH HOH . E 5 HOH A 106 359 359 HOH HOH . E 5 HOH A 107 360 360 HOH HOH . E 5 HOH A 108 361 361 HOH HOH . E 5 HOH A 109 362 362 HOH HOH . E 5 HOH A 110 363 363 HOH HOH . E 5 HOH A 111 364 364 HOH HOH . E 5 HOH A 112 365 365 HOH HOH . E 5 HOH A 113 366 366 HOH HOH . E 5 HOH A 114 367 367 HOH HOH . E 5 HOH A 115 368 368 HOH HOH . E 5 HOH A 116 369 369 HOH HOH . E 5 HOH A 117 371 371 HOH HOH . E 5 HOH A 118 372 372 HOH HOH . E 5 HOH A 119 373 373 HOH HOH . E 5 HOH A 120 374 374 HOH HOH . E 5 HOH A 121 375 375 HOH HOH . E 5 HOH A 122 376 376 HOH HOH . E 5 HOH A 123 377 377 HOH HOH . E 5 HOH A 124 378 378 HOH HOH . E 5 HOH A 125 379 379 HOH HOH . E 5 HOH A 126 380 380 HOH HOH . E 5 HOH A 127 381 381 HOH HOH . E 5 HOH A 128 382 382 HOH HOH . E 5 HOH A 129 383 383 HOH HOH . E 5 HOH A 130 384 384 HOH HOH . E 5 HOH A 131 385 385 HOH HOH . E 5 HOH A 132 386 386 HOH HOH . E 5 HOH A 133 387 387 HOH HOH . E 5 HOH A 134 388 388 HOH HOH . E 5 HOH A 135 389 389 HOH HOH . E 5 HOH A 136 390 390 HOH HOH . E 5 HOH A 137 391 391 HOH HOH . E 5 HOH A 138 392 392 HOH HOH . E 5 HOH A 139 393 393 HOH HOH . E 5 HOH A 140 394 394 HOH HOH . E 5 HOH A 141 395 395 HOH HOH . E 5 HOH A 142 396 396 HOH HOH . E 5 HOH A 143 398 398 HOH HOH . E 5 HOH A 144 399 399 HOH HOH . E 5 HOH A 145 400 400 HOH HOH . E 5 HOH A 146 401 401 HOH HOH . E 5 HOH A 147 402 402 HOH HOH . E 5 HOH A 148 403 403 HOH HOH . E 5 HOH A 149 404 404 HOH HOH . E 5 HOH A 150 405 405 HOH HOH . E 5 HOH A 151 406 406 HOH HOH . E 5 HOH A 152 407 407 HOH HOH . E 5 HOH A 153 408 408 HOH HOH . E 5 HOH A 154 409 409 HOH HOH . E 5 HOH A 155 410 410 HOH HOH . E 5 HOH A 156 411 411 HOH HOH . E 5 HOH A 157 412 412 HOH HOH . E 5 HOH A 158 413 413 HOH HOH . E 5 HOH A 159 414 414 HOH HOH . E 5 HOH A 160 416 416 HOH HOH . E 5 HOH A 161 417 417 HOH HOH . E 5 HOH A 162 418 418 HOH HOH . E 5 HOH A 163 420 420 HOH HOH . E 5 HOH A 164 421 421 HOH HOH . E 5 HOH A 165 422 422 HOH HOH . E 5 HOH A 166 423 423 HOH HOH . E 5 HOH A 167 424 424 HOH HOH . E 5 HOH A 168 425 425 HOH HOH . E 5 HOH A 169 426 426 HOH HOH . E 5 HOH A 170 427 427 HOH HOH . E 5 HOH A 171 429 429 HOH HOH . E 5 HOH A 172 430 430 HOH HOH . E 5 HOH A 173 431 431 HOH HOH . E 5 HOH A 174 432 432 HOH HOH . E 5 HOH A 175 434 434 HOH HOH . E 5 HOH A 176 436 436 HOH HOH . E 5 HOH A 177 437 437 HOH HOH . E 5 HOH A 178 438 438 HOH HOH . E 5 HOH A 179 439 439 HOH HOH . E 5 HOH A 180 440 440 HOH HOH . E 5 HOH A 181 441 441 HOH HOH . E 5 HOH A 182 442 442 HOH HOH . E 5 HOH A 183 443 443 HOH HOH . E 5 HOH A 184 444 444 HOH HOH . E 5 HOH A 185 445 445 HOH HOH . E 5 HOH A 186 446 446 HOH HOH . E 5 HOH A 187 447 447 HOH HOH . E 5 HOH A 188 450 450 HOH HOH . E 5 HOH A 189 451 451 HOH HOH . E 5 HOH A 190 453 453 HOH HOH . E 5 HOH A 191 454 454 HOH HOH . E 5 HOH A 192 455 455 HOH HOH . E 5 HOH A 193 456 456 HOH HOH . E 5 HOH A 194 457 457 HOH HOH . E 5 HOH A 195 458 458 HOH HOH . E 5 HOH A 196 459 459 HOH HOH . E 5 HOH A 197 460 460 HOH HOH . E 5 HOH A 198 461 461 HOH HOH . E 5 HOH A 199 462 462 HOH HOH . E 5 HOH A 200 464 464 HOH HOH . E 5 HOH A 201 465 465 HOH HOH . E 5 HOH A 202 466 466 HOH HOH . E 5 HOH A 203 467 467 HOH HOH . E 5 HOH A 204 468 468 HOH HOH . E 5 HOH A 205 469 469 HOH HOH . E 5 HOH A 206 470 470 HOH HOH . E 5 HOH A 207 471 471 HOH HOH . E 5 HOH A 208 472 472 HOH HOH . E 5 HOH A 209 473 473 HOH HOH . E 5 HOH A 210 474 474 HOH HOH . E 5 HOH A 211 476 476 HOH HOH . E 5 HOH A 212 478 478 HOH HOH . E 5 HOH A 213 479 479 HOH HOH . E 5 HOH A 214 480 480 HOH HOH . E 5 HOH A 215 481 481 HOH HOH . E 5 HOH A 216 484 484 HOH HOH . E 5 HOH A 217 486 486 HOH HOH . E 5 HOH A 218 488 488 HOH HOH . E 5 HOH A 219 491 491 HOH HOH . E 5 HOH A 220 494 494 HOH HOH . E 5 HOH A 221 496 496 HOH HOH . E 5 HOH A 222 497 497 HOH HOH . E 5 HOH A 223 498 498 HOH HOH . E 5 HOH A 224 499 499 HOH HOH . E 5 HOH A 225 500 500 HOH HOH . E 5 HOH A 226 501 501 HOH HOH . E 5 HOH A 227 502 502 HOH HOH . E 5 HOH A 228 503 503 HOH HOH . E 5 HOH A 229 505 505 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 -18.174 3.986 -22.026 1 36.02 ? C1 GOL 249 A 1 HETATM 2 O O1 GOL . . . D 4 -17.268 5.071 -22.26 1 34.69 ? O1 GOL 249 A 1 HETATM 3 C C2 GOL . . . D 4 -18.722 3.448 -23.367 1 33.28 ? C2 GOL 249 A 1 HETATM 4 O O2 GOL . . . D 4 -17.572 3.164 -24.195 1 29.6 ? O2 GOL 249 A 1 HETATM 5 C C3 GOL . . . D 4 -19.754 4.51 -23.859 1 32.28 ? C3 GOL 249 A 1 HETATM 6 O O3 GOL . . . D 4 -20.142 4.255 -25.236 1 26.61 ? O3 GOL 249 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #