data_3V1B # _model_server_result.job_id AQ5yRZK8oQRr4wmB9qAB5w _model_server_result.datetime_utc '2024-11-26 21:13:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3v1b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":47}' # _entry.id 3V1B # _exptl.entry_id 3V1B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3V1B _cell.length_a 25.405 _cell.length_b 41.931 _cell.length_c 67.159 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3V1B _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 3V1B _atom_sites.fract_transf_matrix[1][1] 0.039362 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023849 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01489 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL B 1 47 1 GOL GOL . D 3 HOH A 1 47 3 HOH HOH . D 3 HOH A 2 48 7 HOH HOH . D 3 HOH A 3 49 49 HOH HOH . D 3 HOH A 4 50 10 HOH HOH . D 3 HOH A 5 51 14 HOH HOH . D 3 HOH A 6 52 15 HOH HOH . D 3 HOH A 7 53 53 HOH HOH . D 3 HOH A 8 54 16 HOH HOH . D 3 HOH A 9 55 17 HOH HOH . D 3 HOH A 10 56 20 HOH HOH . D 3 HOH A 11 57 21 HOH HOH . D 3 HOH A 12 58 58 HOH HOH . D 3 HOH A 13 59 23 HOH HOH . D 3 HOH A 14 60 31 HOH HOH . D 3 HOH A 15 61 33 HOH HOH . D 3 HOH A 16 62 34 HOH HOH . D 3 HOH A 17 63 36 HOH HOH . D 3 HOH A 18 64 39 HOH HOH . D 3 HOH A 19 65 42 HOH HOH . D 3 HOH A 20 66 46 HOH HOH . D 3 HOH A 21 72 72 HOH HOH . D 3 HOH A 22 79 79 HOH HOH . D 3 HOH A 23 84 84 HOH HOH . E 3 HOH B 1 48 48 HOH HOH . E 3 HOH B 2 49 1 HOH HOH . E 3 HOH B 3 50 2 HOH HOH . E 3 HOH B 4 51 4 HOH HOH . E 3 HOH B 5 52 52 HOH HOH . E 3 HOH B 6 53 5 HOH HOH . E 3 HOH B 7 54 6 HOH HOH . E 3 HOH B 8 55 8 HOH HOH . E 3 HOH B 9 56 9 HOH HOH . E 3 HOH B 10 57 57 HOH HOH . E 3 HOH B 11 58 11 HOH HOH . E 3 HOH B 12 59 12 HOH HOH . E 3 HOH B 13 60 60 HOH HOH . E 3 HOH B 14 61 13 HOH HOH . E 3 HOH B 15 62 18 HOH HOH . E 3 HOH B 16 63 19 HOH HOH . E 3 HOH B 17 64 64 HOH HOH . E 3 HOH B 18 65 65 HOH HOH . E 3 HOH B 19 66 66 HOH HOH . E 3 HOH B 20 67 67 HOH HOH . E 3 HOH B 21 68 22 HOH HOH . E 3 HOH B 22 69 24 HOH HOH . E 3 HOH B 23 70 25 HOH HOH . E 3 HOH B 24 71 26 HOH HOH . E 3 HOH B 25 72 27 HOH HOH . E 3 HOH B 26 73 73 HOH HOH . E 3 HOH B 27 74 28 HOH HOH . E 3 HOH B 28 75 29 HOH HOH . E 3 HOH B 29 76 30 HOH HOH . E 3 HOH B 30 77 32 HOH HOH . E 3 HOH B 31 78 78 HOH HOH . E 3 HOH B 32 79 38 HOH HOH . E 3 HOH B 33 80 40 HOH HOH . E 3 HOH B 34 81 41 HOH HOH . E 3 HOH B 35 82 43 HOH HOH . E 3 HOH B 36 83 44 HOH HOH . E 3 HOH B 37 84 47 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 -14.909 -5.206 33.725 1 44.11 ? C1 GOL 47 B 1 HETATM 2 O O1 GOL . . . C 2 -13.521 -5.492 33.523 1 29.28 ? O1 GOL 47 B 1 HETATM 3 C C2 GOL . . . C 2 -15.578 -5.301 32.359 1 36.84 ? C2 GOL 47 B 1 HETATM 4 O O2 GOL . . . C 2 -15.276 -6.575 31.88 1 26.79 ? O2 GOL 47 B 1 HETATM 5 C C3 GOL . . . C 2 -17.074 -5.068 32.244 1 34.2 ? C3 GOL 47 B 1 HETATM 6 O O3 GOL . . . C 2 -17.392 -4.158 31.182 1 19.42 ? O3 GOL 47 B 1 HETATM 7 H H11 GOL . . . C 2 -15.033 -4.205 34.139 1 52.93 ? H11 GOL 47 B 1 HETATM 8 H H12 GOL . . . C 2 -15.348 -5.928 34.413 1 52.93 ? H12 GOL 47 B 1 HETATM 9 H HO1 GOL . . . C 2 -13.038 -5.378 34.368 1 35.13 ? HO1 GOL 47 B 1 HETATM 10 H H2 GOL . . . C 2 -15.092 -4.569 31.714 1 44.2 ? H2 GOL 47 B 1 HETATM 11 H HO2 GOL . . . C 2 -15.765 -7.245 32.402 1 32.14 ? HO2 GOL 47 B 1 HETATM 12 H H31 GOL . . . C 2 -17.45 -4.668 33.186 1 41.04 ? H31 GOL 47 B 1 HETATM 13 H H32 GOL . . . C 2 -17.574 -6.02 32.065 1 41.04 ? H32 GOL 47 B 1 HETATM 14 H HO3 GOL . . . C 2 -17.993 -3.461 31.518 1 23.3 ? HO3 GOL 47 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 14 #