data_3V1K # _model_server_result.job_id mwHF7Av34utBEN4U24kQkw _model_server_result.datetime_utc '2025-03-05 18:17:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3v1k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":287}' # _entry.id 3V1K # _exptl.entry_id 3V1K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 104.061 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3V1K _cell.length_a 135.992 _cell.length_b 135.992 _cell.length_c 65.767 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3V1K _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 135.992 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H4 O4' _chem_comp.formula_weight 104.061 _chem_comp.id MLA _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'DICARBOXYLIC ACID C3;PROPANEDIOLIC ACID;METHANEDICARBOXYLIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1A MLA sing 237 n n C1 O1B MLA doub 238 n n C1 C2 MLA sing 239 n n O1A H1A MLA sing 240 n n C2 C3 MLA sing 241 n n C2 HC21 MLA sing 242 n n C2 HC22 MLA sing 243 n n C3 O3A MLA doub 244 n n C3 O3B MLA sing 245 n n O3B H3B MLA sing 246 n n # _atom_sites.entry_id 3V1K _atom_sites.fract_transf_matrix[1][1] 0.007353 _atom_sites.fract_transf_matrix[1][2] 0.004245 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008491 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015205 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MLA A 1 287 1 MLA MLI . D 3 HOH A 1 288 1 HOH HOH . D 3 HOH A 2 289 2 HOH HOH . D 3 HOH A 3 290 3 HOH HOH . D 3 HOH A 4 291 4 HOH HOH . D 3 HOH A 5 292 5 HOH HOH . D 3 HOH A 6 293 6 HOH HOH . D 3 HOH A 7 294 7 HOH HOH . D 3 HOH A 8 295 8 HOH HOH . D 3 HOH A 9 296 9 HOH HOH . D 3 HOH A 10 297 10 HOH HOH . D 3 HOH A 11 298 11 HOH HOH . D 3 HOH A 12 299 12 HOH HOH . D 3 HOH A 13 300 13 HOH HOH . D 3 HOH A 14 301 14 HOH HOH . D 3 HOH A 15 302 15 HOH HOH . D 3 HOH A 16 303 16 HOH HOH . D 3 HOH A 17 304 17 HOH HOH . D 3 HOH A 18 305 18 HOH HOH . D 3 HOH A 19 306 19 HOH HOH . D 3 HOH A 20 307 20 HOH HOH . D 3 HOH A 21 308 21 HOH HOH . D 3 HOH A 22 309 22 HOH HOH . D 3 HOH A 23 310 24 HOH HOH . D 3 HOH A 24 311 25 HOH HOH . D 3 HOH A 25 312 27 HOH HOH . D 3 HOH A 26 313 28 HOH HOH . D 3 HOH A 27 314 29 HOH HOH . D 3 HOH A 28 315 30 HOH HOH . D 3 HOH A 29 316 31 HOH HOH . D 3 HOH A 30 317 32 HOH HOH . D 3 HOH A 31 318 33 HOH HOH . D 3 HOH A 32 319 34 HOH HOH . D 3 HOH A 33 320 35 HOH HOH . D 3 HOH A 34 321 36 HOH HOH . D 3 HOH A 35 322 37 HOH HOH . D 3 HOH A 36 323 39 HOH HOH . D 3 HOH A 37 324 40 HOH HOH . D 3 HOH A 38 325 41 HOH HOH . D 3 HOH A 39 326 42 HOH HOH . D 3 HOH A 40 327 43 HOH HOH . D 3 HOH A 41 328 44 HOH HOH . D 3 HOH A 42 329 45 HOH HOH . D 3 HOH A 43 330 46 HOH HOH . D 3 HOH A 44 331 47 HOH HOH . D 3 HOH A 45 332 48 HOH HOH . D 3 HOH A 46 333 49 HOH HOH . D 3 HOH A 47 334 51 HOH HOH . D 3 HOH A 48 335 52 HOH HOH . D 3 HOH A 49 336 53 HOH HOH . D 3 HOH A 50 337 54 HOH HOH . D 3 HOH A 51 338 56 HOH HOH . D 3 HOH A 52 339 57 HOH HOH . D 3 HOH A 53 340 58 HOH HOH . D 3 HOH A 54 341 59 HOH HOH . D 3 HOH A 55 342 60 HOH HOH . D 3 HOH A 56 343 61 HOH HOH . D 3 HOH A 57 344 62 HOH HOH . D 3 HOH A 58 345 63 HOH HOH . D 3 HOH A 59 346 64 HOH HOH . D 3 HOH A 60 347 65 HOH HOH . D 3 HOH A 61 348 66 HOH HOH . D 3 HOH A 62 349 67 HOH HOH . D 3 HOH A 63 350 68 HOH HOH . D 3 HOH A 64 351 69 HOH HOH . D 3 HOH A 65 352 70 HOH HOH . D 3 HOH A 66 353 71 HOH HOH . D 3 HOH A 67 354 72 HOH HOH . D 3 HOH A 68 355 73 HOH HOH . D 3 HOH A 69 356 74 HOH HOH . D 3 HOH A 70 357 75 HOH HOH . D 3 HOH A 71 358 78 HOH HOH . D 3 HOH A 72 359 80 HOH HOH . D 3 HOH A 73 360 81 HOH HOH . D 3 HOH A 74 361 82 HOH HOH . D 3 HOH A 75 362 83 HOH HOH . D 3 HOH A 76 363 84 HOH HOH . D 3 HOH A 77 364 86 HOH HOH . D 3 HOH A 78 365 88 HOH HOH . D 3 HOH A 79 366 89 HOH HOH . D 3 HOH A 80 367 90 HOH HOH . D 3 HOH A 81 368 91 HOH HOH . D 3 HOH A 82 369 92 HOH HOH . D 3 HOH A 83 370 93 HOH HOH . D 3 HOH A 84 371 94 HOH HOH . D 3 HOH A 85 372 95 HOH HOH . D 3 HOH A 86 373 96 HOH HOH . D 3 HOH A 87 374 97 HOH HOH . D 3 HOH A 88 375 98 HOH HOH . D 3 HOH A 89 376 99 HOH HOH . D 3 HOH A 90 377 100 HOH HOH . D 3 HOH A 91 378 101 HOH HOH . D 3 HOH A 92 379 102 HOH HOH . D 3 HOH A 93 380 103 HOH HOH . D 3 HOH A 94 381 104 HOH HOH . D 3 HOH A 95 382 105 HOH HOH . D 3 HOH A 96 383 106 HOH HOH . D 3 HOH A 97 384 110 HOH HOH . D 3 HOH A 98 385 111 HOH HOH . D 3 HOH A 99 386 112 HOH HOH . D 3 HOH A 100 387 113 HOH HOH . D 3 HOH A 101 388 114 HOH HOH . D 3 HOH A 102 389 115 HOH HOH . D 3 HOH A 103 390 116 HOH HOH . D 3 HOH A 104 391 117 HOH HOH . D 3 HOH A 105 392 118 HOH HOH . D 3 HOH A 106 393 119 HOH HOH . D 3 HOH A 107 394 122 HOH HOH . D 3 HOH A 108 395 123 HOH HOH . D 3 HOH A 109 396 124 HOH HOH . E 3 HOH B 1 287 23 HOH HOH . E 3 HOH B 2 288 26 HOH HOH . E 3 HOH B 3 289 38 HOH HOH . E 3 HOH B 4 290 50 HOH HOH . E 3 HOH B 5 291 55 HOH HOH . E 3 HOH B 6 292 76 HOH HOH . E 3 HOH B 7 293 77 HOH HOH . E 3 HOH B 8 294 79 HOH HOH . E 3 HOH B 9 295 85 HOH HOH . E 3 HOH B 10 296 87 HOH HOH . E 3 HOH B 11 297 107 HOH HOH . E 3 HOH B 12 298 108 HOH HOH . E 3 HOH B 13 299 109 HOH HOH . E 3 HOH B 14 300 120 HOH HOH . E 3 HOH B 15 301 121 HOH HOH . E 3 HOH B 16 302 125 HOH HOH . E 3 HOH B 17 303 126 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLA . . . C 2 69.689 -24.179 5.873 1 39.3 ? C1 MLA 287 A 1 HETATM 2 O O1A MLA . . . C 2 68.715 -24.8 6.383 1 40.61 ? O1A MLA 287 A 1 HETATM 3 O O1B MLA . . . C 2 70.554 -24.79 5.217 1 35.47 ? O1B MLA 287 A 1 HETATM 4 C C2 MLA . . . C 2 69.859 -22.666 6.012 1 41.78 ? C2 MLA 287 A 1 HETATM 5 C C3 MLA . . . C 2 68.618 -21.965 6.535 1 45.12 ? C3 MLA 287 A 1 HETATM 6 O O3A MLA . . . C 2 67.522 -22.564 6.458 1 45.92 ? O3A MLA 287 A 1 HETATM 7 O O3B MLA . . . C 2 68.706 -20.804 7.019 1 52.48 ? O3B MLA 287 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 7 #