data_3V1L # _model_server_result.job_id nV0r-k8KLj8Ebn9i5YbrEg _model_server_result.datetime_utc '2025-03-05 18:35:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3v1l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":287}' # _entry.id 3V1L # _exptl.entry_id 3V1L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 104.061 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3V1L _cell.length_a 117.458 _cell.length_b 117.458 _cell.length_c 87.791 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3V1L _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 3 'crystal symmetry operation' 10_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 4 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H4 O4' _chem_comp.formula_weight 104.061 _chem_comp.id MLA _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'DICARBOXYLIC ACID C3;PROPANEDIOLIC ACID;METHANEDICARBOXYLIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1A MLA sing 237 n n C1 O1B MLA doub 238 n n C1 C2 MLA sing 239 n n O1A H1A MLA sing 240 n n C2 C3 MLA sing 241 n n C2 HC21 MLA sing 242 n n C2 HC22 MLA sing 243 n n C3 O3A MLA doub 244 n n C3 O3B MLA sing 245 n n O3B H3B MLA sing 246 n n # _atom_sites.entry_id 3V1L _atom_sites.fract_transf_matrix[1][1] 0.008514 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008514 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011391 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MLA A 1 287 1 MLA MLI . C 3 HOH A 1 288 1 HOH HOH . C 3 HOH A 2 289 2 HOH HOH . C 3 HOH A 3 290 3 HOH HOH . C 3 HOH A 4 291 4 HOH HOH . C 3 HOH A 5 292 5 HOH HOH . C 3 HOH A 6 293 6 HOH HOH . C 3 HOH A 7 294 7 HOH HOH . C 3 HOH A 8 295 8 HOH HOH . C 3 HOH A 9 296 9 HOH HOH . C 3 HOH A 10 297 10 HOH HOH . C 3 HOH A 11 298 11 HOH HOH . C 3 HOH A 12 299 12 HOH HOH . C 3 HOH A 13 300 13 HOH HOH . C 3 HOH A 14 301 14 HOH HOH . C 3 HOH A 15 302 15 HOH HOH . C 3 HOH A 16 303 16 HOH HOH . C 3 HOH A 17 304 17 HOH HOH . C 3 HOH A 18 305 18 HOH HOH . C 3 HOH A 19 306 19 HOH HOH . C 3 HOH A 20 307 20 HOH HOH . C 3 HOH A 21 308 21 HOH HOH . C 3 HOH A 22 309 22 HOH HOH . C 3 HOH A 23 310 23 HOH HOH . C 3 HOH A 24 311 24 HOH HOH . C 3 HOH A 25 312 25 HOH HOH . C 3 HOH A 26 313 26 HOH HOH . C 3 HOH A 27 314 27 HOH HOH . C 3 HOH A 28 315 28 HOH HOH . C 3 HOH A 29 316 29 HOH HOH . C 3 HOH A 30 317 30 HOH HOH . C 3 HOH A 31 318 31 HOH HOH . C 3 HOH A 32 319 32 HOH HOH . C 3 HOH A 33 320 33 HOH HOH . C 3 HOH A 34 321 34 HOH HOH . C 3 HOH A 35 322 35 HOH HOH . C 3 HOH A 36 323 36 HOH HOH . C 3 HOH A 37 324 37 HOH HOH . C 3 HOH A 38 325 38 HOH HOH . C 3 HOH A 39 326 39 HOH HOH . C 3 HOH A 40 327 40 HOH HOH . C 3 HOH A 41 328 41 HOH HOH . C 3 HOH A 42 329 42 HOH HOH . C 3 HOH A 43 330 43 HOH HOH . C 3 HOH A 44 331 44 HOH HOH . C 3 HOH A 45 332 45 HOH HOH . C 3 HOH A 46 333 46 HOH HOH . C 3 HOH A 47 334 47 HOH HOH . C 3 HOH A 48 335 48 HOH HOH . C 3 HOH A 49 336 49 HOH HOH . C 3 HOH A 50 337 50 HOH HOH . C 3 HOH A 51 338 51 HOH HOH . C 3 HOH A 52 339 52 HOH HOH . C 3 HOH A 53 340 53 HOH HOH . C 3 HOH A 54 341 54 HOH HOH . C 3 HOH A 55 342 55 HOH HOH . C 3 HOH A 56 343 56 HOH HOH . C 3 HOH A 57 344 57 HOH HOH . C 3 HOH A 58 345 58 HOH HOH . C 3 HOH A 59 346 59 HOH HOH . C 3 HOH A 60 347 60 HOH HOH . C 3 HOH A 61 348 61 HOH HOH . C 3 HOH A 62 349 62 HOH HOH . C 3 HOH A 63 350 63 HOH HOH . C 3 HOH A 64 351 64 HOH HOH . C 3 HOH A 65 352 65 HOH HOH . C 3 HOH A 66 353 66 HOH HOH . C 3 HOH A 67 354 67 HOH HOH . C 3 HOH A 68 355 68 HOH HOH . C 3 HOH A 69 356 69 HOH HOH . C 3 HOH A 70 357 70 HOH HOH . C 3 HOH A 71 358 71 HOH HOH . C 3 HOH A 72 359 72 HOH HOH . C 3 HOH A 73 360 73 HOH HOH . C 3 HOH A 74 361 74 HOH HOH . C 3 HOH A 75 362 75 HOH HOH . C 3 HOH A 76 363 76 HOH HOH . C 3 HOH A 77 364 77 HOH HOH . C 3 HOH A 78 365 78 HOH HOH . C 3 HOH A 79 366 79 HOH HOH . C 3 HOH A 80 367 80 HOH HOH . C 3 HOH A 81 368 81 HOH HOH . C 3 HOH A 82 369 82 HOH HOH . C 3 HOH A 83 370 83 HOH HOH . C 3 HOH A 84 371 84 HOH HOH . C 3 HOH A 85 372 85 HOH HOH . C 3 HOH A 86 373 86 HOH HOH . C 3 HOH A 87 374 87 HOH HOH . C 3 HOH A 88 375 88 HOH HOH . C 3 HOH A 89 376 89 HOH HOH . C 3 HOH A 90 377 90 HOH HOH . C 3 HOH A 91 378 91 HOH HOH . C 3 HOH A 92 379 92 HOH HOH . C 3 HOH A 93 380 93 HOH HOH . C 3 HOH A 94 381 94 HOH HOH . C 3 HOH A 95 382 95 HOH HOH . C 3 HOH A 96 383 96 HOH HOH . C 3 HOH A 97 384 97 HOH HOH . C 3 HOH A 98 385 98 HOH HOH . C 3 HOH A 99 386 99 HOH HOH . C 3 HOH A 100 387 100 HOH HOH . C 3 HOH A 101 388 101 HOH HOH . C 3 HOH A 102 389 102 HOH HOH . C 3 HOH A 103 390 103 HOH HOH . C 3 HOH A 104 391 104 HOH HOH . C 3 HOH A 105 392 105 HOH HOH . C 3 HOH A 106 393 106 HOH HOH . C 3 HOH A 107 394 107 HOH HOH . C 3 HOH A 108 395 108 HOH HOH . C 3 HOH A 109 396 109 HOH HOH . C 3 HOH A 110 397 110 HOH HOH . C 3 HOH A 111 398 111 HOH HOH . C 3 HOH A 112 399 112 HOH HOH . C 3 HOH A 113 400 113 HOH HOH . C 3 HOH A 114 401 114 HOH HOH . C 3 HOH A 115 402 115 HOH HOH . C 3 HOH A 116 403 116 HOH HOH . C 3 HOH A 117 404 117 HOH HOH . C 3 HOH A 118 405 118 HOH HOH . C 3 HOH A 119 406 119 HOH HOH . C 3 HOH A 120 407 120 HOH HOH . C 3 HOH A 121 408 121 HOH HOH . C 3 HOH A 122 409 122 HOH HOH . C 3 HOH A 123 410 123 HOH HOH . C 3 HOH A 124 411 124 HOH HOH . C 3 HOH A 125 412 125 HOH HOH . C 3 HOH A 126 413 126 HOH HOH . C 3 HOH A 127 414 127 HOH HOH . C 3 HOH A 128 415 128 HOH HOH . C 3 HOH A 129 416 129 HOH HOH . C 3 HOH A 130 417 130 HOH HOH . C 3 HOH A 131 418 131 HOH HOH . C 3 HOH A 132 419 132 HOH HOH . C 3 HOH A 133 420 133 HOH HOH . C 3 HOH A 134 421 134 HOH HOH . C 3 HOH A 135 422 135 HOH HOH . C 3 HOH A 136 423 136 HOH HOH . C 3 HOH A 137 424 137 HOH HOH . C 3 HOH A 138 425 138 HOH HOH . C 3 HOH A 139 426 139 HOH HOH . C 3 HOH A 140 427 140 HOH HOH . C 3 HOH A 141 428 141 HOH HOH . C 3 HOH A 142 429 142 HOH HOH . C 3 HOH A 143 430 143 HOH HOH . C 3 HOH A 144 431 144 HOH HOH . C 3 HOH A 145 432 145 HOH HOH . C 3 HOH A 146 433 146 HOH HOH . C 3 HOH A 147 434 147 HOH HOH . C 3 HOH A 148 435 148 HOH HOH . C 3 HOH A 149 436 149 HOH HOH . C 3 HOH A 150 437 150 HOH HOH . C 3 HOH A 151 438 151 HOH HOH . C 3 HOH A 152 439 152 HOH HOH . C 3 HOH A 153 440 153 HOH HOH . C 3 HOH A 154 441 154 HOH HOH . C 3 HOH A 155 442 155 HOH HOH . C 3 HOH A 156 443 156 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLA . . . B 2 -8.271 38.598 -6.815 1 26.92 ? C1 MLA 287 A 1 HETATM 2 O O1A MLA . . . B 2 -8.397 37.402 -6.47 1 24.6 ? O1A MLA 287 A 1 HETATM 3 O O1B MLA . . . B 2 -8.445 38.991 -7.989 1 26.63 ? O1B MLA 287 A 1 HETATM 4 C C2 MLA . . . B 2 -7.888 39.61 -5.758 1 27.55 ? C2 MLA 287 A 1 HETATM 5 C C3 MLA . . . B 2 -6.393 39.53 -5.493 1 28.65 ? C3 MLA 287 A 1 HETATM 6 O O3A MLA . . . B 2 -5.652 40.437 -5.915 1 28.49 ? O3A MLA 287 A 1 HETATM 7 O O3B MLA . . . B 2 -5.913 38.556 -4.861 1 29.11 ? O3B MLA 287 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 7 #