data_3V1M # _model_server_result.job_id TS3rQLcJYqY2QFpeJdKXRg _model_server_result.datetime_utc '2024-11-12 23:01:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3v1m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":287}' # _entry.id 3V1M # _exptl.entry_id 3V1M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 102.046 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3V1M _cell.length_a 117.085 _cell.length_b 117.085 _cell.length_c 87.187 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3V1M _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 3 'crystal symmetry operation' 10_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 4 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H2 O4 -2' _chem_comp.formula_weight 102.046 _chem_comp.id MLI _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MLI sing 262 n n C1 C3 MLI sing 263 n n C1 H11 MLI sing 264 n n C1 H12 MLI sing 265 n n C2 O6 MLI doub 266 n n C2 O7 MLI sing 267 n n C3 O8 MLI doub 268 n n C3 O9 MLI sing 269 n n # _atom_sites.entry_id 3V1M _atom_sites.fract_transf_matrix[1][1] 0.008541 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008541 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01147 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MLI A 1 287 1 MLI MLI . C 3 HPK A 1 288 1 HPK HKE . D 4 HOH A 1 289 1 HOH HOH . D 4 HOH A 2 290 2 HOH HOH . D 4 HOH A 3 291 3 HOH HOH . D 4 HOH A 4 292 4 HOH HOH . D 4 HOH A 5 293 5 HOH HOH . D 4 HOH A 6 294 6 HOH HOH . D 4 HOH A 7 295 7 HOH HOH . D 4 HOH A 8 296 8 HOH HOH . D 4 HOH A 9 297 9 HOH HOH . D 4 HOH A 10 298 10 HOH HOH . D 4 HOH A 11 299 11 HOH HOH . D 4 HOH A 12 300 12 HOH HOH . D 4 HOH A 13 301 13 HOH HOH . D 4 HOH A 14 302 14 HOH HOH . D 4 HOH A 15 303 15 HOH HOH . D 4 HOH A 16 304 16 HOH HOH . D 4 HOH A 17 305 17 HOH HOH . D 4 HOH A 18 306 18 HOH HOH . D 4 HOH A 19 307 19 HOH HOH . D 4 HOH A 20 308 20 HOH HOH . D 4 HOH A 21 309 21 HOH HOH . D 4 HOH A 22 310 22 HOH HOH . D 4 HOH A 23 311 23 HOH HOH . D 4 HOH A 24 312 24 HOH HOH . D 4 HOH A 25 313 25 HOH HOH . D 4 HOH A 26 314 26 HOH HOH . D 4 HOH A 27 315 27 HOH HOH . D 4 HOH A 28 316 28 HOH HOH . D 4 HOH A 29 317 29 HOH HOH . D 4 HOH A 30 318 30 HOH HOH . D 4 HOH A 31 319 31 HOH HOH . D 4 HOH A 32 320 32 HOH HOH . D 4 HOH A 33 321 33 HOH HOH . D 4 HOH A 34 322 34 HOH HOH . D 4 HOH A 35 323 35 HOH HOH . D 4 HOH A 36 324 36 HOH HOH . D 4 HOH A 37 325 37 HOH HOH . D 4 HOH A 38 326 38 HOH HOH . D 4 HOH A 39 327 39 HOH HOH . D 4 HOH A 40 328 40 HOH HOH . D 4 HOH A 41 329 41 HOH HOH . D 4 HOH A 42 330 42 HOH HOH . D 4 HOH A 43 331 43 HOH HOH . D 4 HOH A 44 332 44 HOH HOH . D 4 HOH A 45 333 45 HOH HOH . D 4 HOH A 46 334 46 HOH HOH . D 4 HOH A 47 335 47 HOH HOH . D 4 HOH A 48 336 48 HOH HOH . D 4 HOH A 49 337 49 HOH HOH . D 4 HOH A 50 338 50 HOH HOH . D 4 HOH A 51 339 51 HOH HOH . D 4 HOH A 52 340 52 HOH HOH . D 4 HOH A 53 341 53 HOH HOH . D 4 HOH A 54 342 54 HOH HOH . D 4 HOH A 55 343 55 HOH HOH . D 4 HOH A 56 344 56 HOH HOH . D 4 HOH A 57 345 57 HOH HOH . D 4 HOH A 58 346 58 HOH HOH . D 4 HOH A 59 347 59 HOH HOH . D 4 HOH A 60 348 60 HOH HOH . D 4 HOH A 61 349 61 HOH HOH . D 4 HOH A 62 350 62 HOH HOH . D 4 HOH A 63 351 63 HOH HOH . D 4 HOH A 64 352 64 HOH HOH . D 4 HOH A 65 353 65 HOH HOH . D 4 HOH A 66 354 66 HOH HOH . D 4 HOH A 67 355 67 HOH HOH . D 4 HOH A 68 356 68 HOH HOH . D 4 HOH A 69 357 69 HOH HOH . D 4 HOH A 70 358 70 HOH HOH . D 4 HOH A 71 359 71 HOH HOH . D 4 HOH A 72 360 72 HOH HOH . D 4 HOH A 73 361 73 HOH HOH . D 4 HOH A 74 362 74 HOH HOH . D 4 HOH A 75 363 75 HOH HOH . D 4 HOH A 76 364 76 HOH HOH . D 4 HOH A 77 365 77 HOH HOH . D 4 HOH A 78 366 78 HOH HOH . D 4 HOH A 79 367 79 HOH HOH . D 4 HOH A 80 368 80 HOH HOH . D 4 HOH A 81 369 81 HOH HOH . D 4 HOH A 82 370 82 HOH HOH . D 4 HOH A 83 371 83 HOH HOH . D 4 HOH A 84 372 84 HOH HOH . D 4 HOH A 85 373 85 HOH HOH . D 4 HOH A 86 374 86 HOH HOH . D 4 HOH A 87 375 87 HOH HOH . D 4 HOH A 88 376 88 HOH HOH . D 4 HOH A 89 377 89 HOH HOH . D 4 HOH A 90 378 90 HOH HOH . D 4 HOH A 91 379 91 HOH HOH . D 4 HOH A 92 380 92 HOH HOH . D 4 HOH A 93 381 93 HOH HOH . D 4 HOH A 94 382 94 HOH HOH . D 4 HOH A 95 383 95 HOH HOH . D 4 HOH A 96 384 96 HOH HOH . D 4 HOH A 97 385 97 HOH HOH . D 4 HOH A 98 386 98 HOH HOH . D 4 HOH A 99 387 99 HOH HOH . D 4 HOH A 100 388 100 HOH HOH . D 4 HOH A 101 389 101 HOH HOH . D 4 HOH A 102 390 102 HOH HOH . D 4 HOH A 103 391 103 HOH HOH . D 4 HOH A 104 392 104 HOH HOH . D 4 HOH A 105 393 105 HOH HOH . D 4 HOH A 106 394 106 HOH HOH . D 4 HOH A 107 395 107 HOH HOH . D 4 HOH A 108 396 108 HOH HOH . D 4 HOH A 109 397 109 HOH HOH . D 4 HOH A 110 398 110 HOH HOH . D 4 HOH A 111 399 111 HOH HOH . D 4 HOH A 112 400 112 HOH HOH . D 4 HOH A 113 401 113 HOH HOH . D 4 HOH A 114 402 114 HOH HOH . D 4 HOH A 115 403 115 HOH HOH . D 4 HOH A 116 404 116 HOH HOH . D 4 HOH A 117 405 117 HOH HOH . D 4 HOH A 118 406 118 HOH HOH . D 4 HOH A 119 407 119 HOH HOH . D 4 HOH A 120 408 120 HOH HOH . D 4 HOH A 121 409 121 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLI . . . B 2 -8.215 39.535 -5.691 1 29.5 ? C1 MLI 287 A 1 HETATM 2 C C2 MLI . . . B 2 -6.717 39.499 -5.477 1 28.76 ? C2 MLI 287 A 1 HETATM 3 C C3 MLI . . . B 2 -8.596 38.567 -6.786 1 30.63 ? C3 MLI 287 A 1 HETATM 4 O O6 MLI . . . B 2 -6.036 40.414 -5.948 1 27.1 ? O6 MLI 287 A 1 HETATM 5 O O7 MLI . . . B 2 -6.174 38.567 -4.845 1 27.76 ? O7 MLI 287 A 1 HETATM 6 O O8 MLI . . . B 2 -8.583 38.958 -7.969 1 31.66 ? O8 MLI 287 A 1 HETATM 7 O O9 MLI . . . B 2 -8.912 37.412 -6.459 1 30.7 ? O9 MLI 287 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 7 #