data_3V1U # _model_server_result.job_id ZgmsCWMSLqsG1BSKMqX-DA _model_server_result.datetime_utc '2024-10-19 15:46:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3v1u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 3V1U # _exptl.entry_id 3V1U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 865.677 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEXANOYL-COENZYME A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3V1U _cell.length_a 103.059 _cell.length_b 103.059 _cell.length_c 76.047 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3V1U _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_554 x-y,-y,-z-2/3 1 0 0 0 -1 0 0 0 -1 0 0 -50.698 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H46 N7 O17 P3 S' _chem_comp.formula_weight 865.677 _chem_comp.id HXC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEXANOYL-COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 N3 HXC doub 152 n y C2 N1 HXC sing 153 n y C2 H2 HXC sing 154 n n C4 C5 HXC doub 155 n y C4 N9 HXC sing 156 n y C4 N3 HXC sing 157 n y C5 C6 HXC sing 158 n y C5 N7 HXC sing 159 n y C6 N1 HXC doub 160 n y C6 N6 HXC sing 161 n n C8 N9 HXC sing 162 n y C8 N7 HXC doub 163 n y C8 H8 HXC sing 164 n n N9 C1' HXC sing 165 n n N6 HN61 HXC sing 166 n n N6 HN62 HXC sing 167 n n C1' C2' HXC sing 168 n n C1' O4' HXC sing 169 n n C1' H1' HXC sing 170 n n C2' O2' HXC sing 171 n n C2' C3' HXC sing 172 n n C2' H2' HXC sing 173 n n O2' HO2 HXC sing 174 n n C3' O3' HXC sing 175 n n C3' C4' HXC sing 176 n n C3' H3' HXC sing 177 n n O3' P3 HXC sing 178 n n C4' O4' HXC sing 179 n n C4' C5' HXC sing 180 n n C4' H4' HXC sing 181 n n C5' O5' HXC sing 182 n n C5' "H5'1" HXC sing 183 n n C5' "H5'2" HXC sing 184 n n O5' P1 HXC sing 185 n n P1 O11 HXC doub 186 n n P1 O12 HXC sing 187 n n P1 O6 HXC sing 188 n n O12 H12 HXC sing 189 n n O6 P2 HXC sing 190 n n P2 O21 HXC doub 191 n n P2 O22 HXC sing 192 n n P2 O7 HXC sing 193 n n O22 H22 HXC sing 194 n n O7 CPB HXC sing 195 n n CPB CPA HXC sing 196 n n CPB HPB1 HXC sing 197 n n CPB HPB2 HXC sing 198 n n CPA CP7 HXC sing 199 n n CPA CP9 HXC sing 200 n n CPA CP8 HXC sing 201 n n CP7 OP3 HXC sing 202 n n CP7 CP6 HXC sing 203 n n CP7 HP7 HXC sing 204 n n CP9 HP91 HXC sing 205 n n CP9 HP92 HXC sing 206 n n CP9 HP93 HXC sing 207 n n CP8 HP81 HXC sing 208 n n CP8 HP82 HXC sing 209 n n CP8 HP83 HXC sing 210 n n OP3 HP3 HXC sing 211 n n CP6 OP2 HXC doub 212 n n CP6 NP2 HXC sing 213 n n NP2 CP5 HXC sing 214 n n NP2 HP2 HXC sing 215 n n CP5 CP4 HXC sing 216 n n CP5 HP51 HXC sing 217 n n CP5 HP52 HXC sing 218 n n CP4 CP3 HXC sing 219 n n CP4 HP41 HXC sing 220 n n CP4 HP42 HXC sing 221 n n CP3 OP1 HXC doub 222 n n CP3 NP1 HXC sing 223 n n NP1 CP2 HXC sing 224 n n NP1 HP1 HXC sing 225 n n CP2 CP1 HXC sing 226 n n CP2 HP21 HXC sing 227 n n CP2 HP22 HXC sing 228 n n CP1 S HXC sing 229 n n CP1 HP11 HXC sing 230 n n CP1 HP12 HXC sing 231 n n S CM1 HXC sing 232 n n P3 O31 HXC sing 233 n n P3 O32 HXC sing 234 n n P3 O33 HXC doub 235 n n O31 H31 HXC sing 236 n n O32 H32 HXC sing 237 n n CM1 CM2 HXC sing 238 n n CM1 OM2 HXC doub 239 n n CM2 CM3 HXC sing 240 n n CM2 HM21 HXC sing 241 n n CM2 HM22 HXC sing 242 n n CM3 CM4 HXC sing 243 n n CM3 HM31 HXC sing 244 n n CM3 HM32 HXC sing 245 n n CM4 CM5 HXC sing 246 n n CM4 HM41 HXC sing 247 n n CM4 HM42 HXC sing 248 n n CM5 CM6 HXC sing 249 n n CM5 HM51 HXC sing 250 n n CM5 HM52 HXC sing 251 n n CM6 HM61 HXC sing 252 n n CM6 HM62 HXC sing 253 n n CM6 HM63 HXC sing 254 n n # _atom_sites.entry_id 3V1U _atom_sites.fract_transf_matrix[1][1] 0.009703 _atom_sites.fract_transf_matrix[1][2] 0.005602 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011204 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01315 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD A 1 501 457 NAD NAD . C 3 HXC A 1 502 1 HXC HXC . D 4 ZPG A 1 503 1 ZPG POG . E 5 HOH A 1 601 458 HOH HOH . E 5 HOH A 2 602 459 HOH HOH . E 5 HOH A 3 603 460 HOH HOH . E 5 HOH A 4 604 461 HOH HOH . E 5 HOH A 5 605 462 HOH HOH . E 5 HOH A 6 606 463 HOH HOH . E 5 HOH A 7 607 464 HOH HOH . E 5 HOH A 8 608 465 HOH HOH . E 5 HOH A 9 609 466 HOH HOH . E 5 HOH A 10 610 467 HOH HOH . E 5 HOH A 11 611 468 HOH HOH . E 5 HOH A 12 612 469 HOH HOH . E 5 HOH A 13 613 470 HOH HOH . E 5 HOH A 14 614 471 HOH HOH . E 5 HOH A 15 615 472 HOH HOH . E 5 HOH A 16 616 473 HOH HOH . E 5 HOH A 17 617 474 HOH HOH . E 5 HOH A 18 618 475 HOH HOH . E 5 HOH A 19 619 476 HOH HOH . E 5 HOH A 20 620 477 HOH HOH . E 5 HOH A 21 621 478 HOH HOH . E 5 HOH A 22 622 479 HOH HOH . E 5 HOH A 23 623 480 HOH HOH . E 5 HOH A 24 624 481 HOH HOH . E 5 HOH A 25 625 482 HOH HOH . E 5 HOH A 26 626 483 HOH HOH . E 5 HOH A 27 627 484 HOH HOH . E 5 HOH A 28 628 485 HOH HOH . E 5 HOH A 29 629 486 HOH HOH . E 5 HOH A 30 630 487 HOH HOH . E 5 HOH A 31 631 488 HOH HOH . E 5 HOH A 32 632 489 HOH HOH . E 5 HOH A 33 633 490 HOH HOH . E 5 HOH A 34 634 491 HOH HOH . E 5 HOH A 35 635 492 HOH HOH . E 5 HOH A 36 636 493 HOH HOH . E 5 HOH A 37 637 494 HOH HOH . E 5 HOH A 38 638 495 HOH HOH . E 5 HOH A 39 639 496 HOH HOH . E 5 HOH A 40 640 497 HOH HOH . E 5 HOH A 41 641 498 HOH HOH . E 5 HOH A 42 642 499 HOH HOH . E 5 HOH A 43 643 500 HOH HOH . E 5 HOH A 44 644 501 HOH HOH . E 5 HOH A 45 645 502 HOH HOH . E 5 HOH A 46 646 503 HOH HOH . E 5 HOH A 47 647 504 HOH HOH . E 5 HOH A 48 648 505 HOH HOH . E 5 HOH A 49 649 506 HOH HOH . E 5 HOH A 50 650 507 HOH HOH . E 5 HOH A 51 651 508 HOH HOH . E 5 HOH A 52 652 509 HOH HOH . E 5 HOH A 53 653 510 HOH HOH . E 5 HOH A 54 654 511 HOH HOH . E 5 HOH A 55 655 512 HOH HOH . E 5 HOH A 56 656 513 HOH HOH . E 5 HOH A 57 657 514 HOH HOH . E 5 HOH A 58 658 515 HOH HOH . E 5 HOH A 59 659 516 HOH HOH . E 5 HOH A 60 660 517 HOH HOH . E 5 HOH A 61 661 518 HOH HOH . E 5 HOH A 62 662 519 HOH HOH . E 5 HOH A 63 663 520 HOH HOH . E 5 HOH A 64 664 521 HOH HOH . E 5 HOH A 65 665 522 HOH HOH . E 5 HOH A 66 666 523 HOH HOH . E 5 HOH A 67 667 524 HOH HOH . E 5 HOH A 68 668 525 HOH HOH . E 5 HOH A 69 669 526 HOH HOH . E 5 HOH A 70 670 527 HOH HOH . E 5 HOH A 71 671 528 HOH HOH . E 5 HOH A 72 672 529 HOH HOH . E 5 HOH A 73 673 530 HOH HOH . E 5 HOH A 74 674 531 HOH HOH . E 5 HOH A 75 675 532 HOH HOH . E 5 HOH A 76 676 533 HOH HOH . E 5 HOH A 77 677 534 HOH HOH . E 5 HOH A 78 678 535 HOH HOH . E 5 HOH A 79 679 536 HOH HOH . E 5 HOH A 80 680 537 HOH HOH . E 5 HOH A 81 681 538 HOH HOH . E 5 HOH A 82 682 539 HOH HOH . E 5 HOH A 83 683 540 HOH HOH . E 5 HOH A 84 684 541 HOH HOH . E 5 HOH A 85 685 542 HOH HOH . E 5 HOH A 86 686 543 HOH HOH . E 5 HOH A 87 687 544 HOH HOH . E 5 HOH A 88 688 545 HOH HOH . E 5 HOH A 89 689 546 HOH HOH . E 5 HOH A 90 690 547 HOH HOH . E 5 HOH A 91 691 548 HOH HOH . E 5 HOH A 92 692 549 HOH HOH . E 5 HOH A 93 693 550 HOH HOH . E 5 HOH A 94 694 551 HOH HOH . E 5 HOH A 95 695 552 HOH HOH . E 5 HOH A 96 696 553 HOH HOH . E 5 HOH A 97 697 554 HOH HOH . E 5 HOH A 98 698 555 HOH HOH . E 5 HOH A 99 699 556 HOH HOH . E 5 HOH A 100 700 557 HOH HOH . E 5 HOH A 101 701 558 HOH HOH . E 5 HOH A 102 702 559 HOH HOH . E 5 HOH A 103 703 560 HOH HOH . E 5 HOH A 104 704 561 HOH HOH . E 5 HOH A 105 705 562 HOH HOH . E 5 HOH A 106 706 563 HOH HOH . E 5 HOH A 107 707 564 HOH HOH . E 5 HOH A 108 708 565 HOH HOH . E 5 HOH A 109 709 566 HOH HOH . E 5 HOH A 110 710 567 HOH HOH . E 5 HOH A 111 711 568 HOH HOH . E 5 HOH A 112 712 569 HOH HOH . E 5 HOH A 113 713 570 HOH HOH . E 5 HOH A 114 714 571 HOH HOH . E 5 HOH A 115 715 572 HOH HOH . E 5 HOH A 116 716 573 HOH HOH . E 5 HOH A 117 717 574 HOH HOH . E 5 HOH A 118 718 575 HOH HOH . E 5 HOH A 119 719 576 HOH HOH . E 5 HOH A 120 720 1 HOH HOH . E 5 HOH A 121 721 2 HOH HOH . E 5 HOH A 122 722 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 HXC . . . C 3 57.979 -12.8 -40.96 1 94.71 ? C2 HXC 502 A 1 HETATM 2 C C4 HXC . . . C 3 56.693 -14.077 -42.549 1 96.52 ? C4 HXC 502 A 1 HETATM 3 C C5 HXC . . . C 3 55.672 -13.188 -42.454 1 95.94 ? C5 HXC 502 A 1 HETATM 4 C C6 HXC . . . C 3 55.789 -12.119 -41.629 1 95.46 ? C6 HXC 502 A 1 HETATM 5 C C8 HXC . . . C 3 55.097 -14.741 -43.849 1 96.34 ? C8 HXC 502 A 1 HETATM 6 N N9 HXC . . . C 3 56.33 -15.049 -43.414 1 97.25 ? N9 HXC 502 A 1 HETATM 7 N N7 HXC . . . C 3 54.689 -13.605 -43.264 1 95.14 ? N7 HXC 502 A 1 HETATM 8 N N3 HXC . . . C 3 57.833 -13.903 -41.823 1 95.75 ? N3 HXC 502 A 1 HETATM 9 N N1 HXC . . . C 3 56.897 -11.898 -40.886 1 95.2 ? N1 HXC 502 A 1 HETATM 10 N N6 HXC . . . C 3 54.757 -11.279 -41.566 1 93.91 ? N6 HXC 502 A 1 HETATM 11 C C1' HXC . . . C 3 57.174 -16.29 -43.857 1 98.37 ? C1' HXC 502 A 1 HETATM 12 C C2' HXC . . . C 3 58.537 -15.877 -44.488 0.5 98.44 ? C2' HXC 502 A 1 HETATM 13 O O2' HXC . . . C 3 58.657 -16.356 -45.868 1 98.81 ? O2' HXC 502 A 1 HETATM 14 C C3' HXC . . . C 3 59.647 -16.445 -43.57 1 98.22 ? C3' HXC 502 A 1 HETATM 15 O O3' HXC . . . C 3 60.653 -17.161 -44.334 1 98 ? O3' HXC 502 A 1 HETATM 16 C C4' HXC . . . C 3 58.94 -17.383 -42.559 1 97.91 ? C4' HXC 502 A 1 HETATM 17 O O4' HXC . . . C 3 57.477 -17.332 -42.827 1 98.11 ? O4' HXC 502 A 1 HETATM 18 C C5' HXC . . . C 3 59.367 -16.978 -41.113 1 96.55 ? C5' HXC 502 A 1 HETATM 19 O O5' HXC . . . C 3 58.237 -16.718 -40.241 1 93.33 ? O5' HXC 502 A 1 HETATM 20 P P1 HXC . . . C 3 58.062 -17.404 -38.744 1 92.21 ? P1 HXC 502 A 1 HETATM 21 O O11 HXC . . . C 3 58.829 -18.84 -38.8 1 92.04 ? O11 HXC 502 A 1 HETATM 22 O O12 HXC . . . C 3 58.577 -16.551 -37.631 1 92.5 ? O12 HXC 502 A 1 HETATM 23 O O6 HXC . . . C 3 56.405 -17.75 -38.593 1 89.67 ? O6 HXC 502 A 1 HETATM 24 P P2 HXC . . . C 3 55.53 -18.493 -37.366 1 85.91 ? P2 HXC 502 A 1 HETATM 25 O O21 HXC . . . C 3 54.049 -18.618 -38.019 1 84.84 ? O21 HXC 502 A 1 HETATM 26 O O22 HXC . . . C 3 56.046 -19.813 -36.899 1 85.49 ? O22 HXC 502 A 1 HETATM 27 O O7 HXC . . . C 3 55.372 -17.428 -36.122 1 86.62 ? O7 HXC 502 A 1 HETATM 28 C CPB HXC . . . C 3 56.181 -17.505 -34.937 1 87.04 ? CPB HXC 502 A 1 HETATM 29 C CPA HXC . . . C 3 56.307 -16.142 -34.216 1 88.24 ? CPA HXC 502 A 1 HETATM 30 C CP7 HXC . . . C 3 55.665 -16.294 -32.812 1 88.43 ? CP7 HXC 502 A 1 HETATM 31 C CP9 HXC . . . C 3 57.803 -15.74 -34.112 1 87.99 ? CP9 HXC 502 A 1 HETATM 32 C CP8 HXC . . . C 3 55.541 -15.067 -35.008 1 88.24 ? CP8 HXC 502 A 1 HETATM 33 O OP3 HXC . . . C 3 56.262 -17.379 -32.074 1 87.33 ? OP3 HXC 502 A 1 HETATM 34 C CP6 HXC . . . C 3 55.626 -15.012 -31.916 1 89 ? CP6 HXC 502 A 1 HETATM 35 O OP2 HXC . . . C 3 55.951 -13.877 -32.303 1 88.6 ? OP2 HXC 502 A 1 HETATM 36 N NP2 HXC . . . C 3 55.129 -15.297 -30.695 1 89.06 ? NP2 HXC 502 A 1 HETATM 37 C CP5 HXC . . . C 3 54.88 -14.321 -29.632 1 88.32 ? CP5 HXC 502 A 1 HETATM 38 C CP4 HXC . . . C 3 53.376 -14.355 -29.373 1 87.39 ? CP4 HXC 502 A 1 HETATM 39 C CP3 HXC . . . C 3 53.123 -14.096 -27.898 1 86.82 ? CP3 HXC 502 A 1 HETATM 40 O OP1 HXC . . . C 3 53.084 -12.942 -27.481 1 87.51 ? OP1 HXC 502 A 1 HETATM 41 N NP1 HXC . . . C 3 52.97 -15.185 -27.126 1 85.97 ? NP1 HXC 502 A 1 HETATM 42 C CP2 HXC . . . C 3 52.731 -15.08 -25.679 1 85.02 ? CP2 HXC 502 A 1 HETATM 43 C CP1 HXC . . . C 3 52.2 -16.405 -25.146 1 84.9 ? CP1 HXC 502 A 1 HETATM 44 S S HXC . . . C 3 52.092 -16.401 -23.316 1 85.3 ? S HXC 502 A 1 HETATM 45 C CM1 HXC . . . C 3 50.401 -16.823 -23.079 1 83.11 ? CM1 HXC 502 A 1 HETATM 46 C CM2 HXC . . . C 3 50.224 -17.982 -22.074 1 80.16 ? CM2 HXC 502 A 1 HETATM 47 C CM3 HXC . . . C 3 48.802 -18.113 -21.563 1 76.42 ? CM3 HXC 502 A 1 HETATM 48 O OM2 HXC . . . C 3 49.458 -16.266 -23.663 1 83.09 ? OM2 HXC 502 A 1 HETATM 49 C CM4 HXC . . . C 3 48.12 -19.222 -22.329 1 74.97 ? CM4 HXC 502 A 1 HETATM 50 C CM5 HXC . . . C 3 48.488 -20.539 -21.682 1 74.51 ? CM5 HXC 502 A 1 HETATM 51 C CM6 HXC . . . C 3 47.176 -21.223 -21.32 1 75.76 ? CM6 HXC 502 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 51 #