data_3V1U # _model_server_result.job_id Zu9hvaqn7BC9MJcl-L0ryg _model_server_result.datetime_utc '2024-11-29 17:34:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3v1u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 3V1U # _exptl.entry_id 3V1U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 424.569 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S,5R,8R,11S,14S,17S,21R)-5,8,11,14,17-PENTAMETHYL-4,7,10,13,16,19-HEXAOXADOCOSANE-2,21-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3V1U _cell.length_a 103.059 _cell.length_b 103.059 _cell.length_c 76.047 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3V1U _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_554 x-y,-y,-z-2/3 1 0 0 0 -1 0 0 0 -1 0 0 -50.698 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H44 O8' _chem_comp.formula_weight 424.569 _chem_comp.id ZPG _chem_comp.mon_nstd_flag . _chem_comp.name (2S,5R,8R,11S,14S,17S,21R)-5,8,11,14,17-PENTAMETHYL-4,7,10,13,16,19-HEXAOXADOCOSANE-2,21-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O29 C27 ZPG sing 554 n n O29 HO29 ZPG sing 555 n n C27 C28 ZPG sing 556 n n C27 C24 ZPG sing 557 n n C27 H27 ZPG sing 558 n n C28 H281 ZPG sing 559 n n C28 H282 ZPG sing 560 n n C28 H283 ZPG sing 561 n n C24 O23 ZPG sing 562 n n C24 H241 ZPG sing 563 n n C24 H242 ZPG sing 564 n n O23 C22 ZPG sing 565 n n C22 C26 ZPG sing 566 n n C22 C21 ZPG sing 567 n n C22 H22 ZPG sing 568 n n C26 H261 ZPG sing 569 n n C26 H262 ZPG sing 570 n n C26 H263 ZPG sing 571 n n C21 O20 ZPG sing 572 n n C21 H211 ZPG sing 573 n n C21 H212 ZPG sing 574 n n O20 C20 ZPG sing 575 n n C20 C25 ZPG sing 576 n n C20 C18 ZPG sing 577 n n C20 H20 ZPG sing 578 n n C25 H251 ZPG sing 579 n n C25 H252 ZPG sing 580 n n C25 H253 ZPG sing 581 n n C18 O17 ZPG sing 582 n n C18 H181 ZPG sing 583 n n C18 H182 ZPG sing 584 n n O17 C15 ZPG sing 585 n n C15 C16 ZPG sing 586 n n C15 C14 ZPG sing 587 n n C15 H15 ZPG sing 588 n n C16 H161 ZPG sing 589 n n C16 H162 ZPG sing 590 n n C16 H163 ZPG sing 591 n n C14 O13 ZPG sing 592 n n C14 H141 ZPG sing 593 n n C14 H142 ZPG sing 594 n n O13 C11 ZPG sing 595 n n C11 C12 ZPG sing 596 n n C11 C10 ZPG sing 597 n n C11 H11 ZPG sing 598 n n C12 H121 ZPG sing 599 n n C12 H122 ZPG sing 600 n n C12 H123 ZPG sing 601 n n C10 O9 ZPG sing 602 n n C10 H101 ZPG sing 603 n n C10 H102 ZPG sing 604 n n O9 C7 ZPG sing 605 n n C7 C8 ZPG sing 606 n n C7 C6 ZPG sing 607 n n C7 H7 ZPG sing 608 n n C8 H81 ZPG sing 609 n n C8 H82 ZPG sing 610 n n C8 H83 ZPG sing 611 n n C6 O5 ZPG sing 612 n n C6 H61 ZPG sing 613 n n C6 H62 ZPG sing 614 n n O5 C4 ZPG sing 615 n n C4 C2 ZPG sing 616 n n C4 H41 ZPG sing 617 n n C4 H42 ZPG sing 618 n n C2 C3 ZPG sing 619 n n C2 O1 ZPG sing 620 n n C2 H2 ZPG sing 621 n n C3 H31 ZPG sing 622 n n C3 H32 ZPG sing 623 n n C3 H33 ZPG sing 624 n n O1 HO1 ZPG sing 625 n n # _atom_sites.entry_id 3V1U _atom_sites.fract_transf_matrix[1][1] 0.009703 _atom_sites.fract_transf_matrix[1][2] 0.005602 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011204 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01315 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD A 1 501 457 NAD NAD . C 3 HXC A 1 502 1 HXC HXC . D 4 ZPG A 1 503 1 ZPG POG . E 5 HOH A 1 601 458 HOH HOH . E 5 HOH A 2 602 459 HOH HOH . E 5 HOH A 3 603 460 HOH HOH . E 5 HOH A 4 604 461 HOH HOH . E 5 HOH A 5 605 462 HOH HOH . E 5 HOH A 6 606 463 HOH HOH . E 5 HOH A 7 607 464 HOH HOH . E 5 HOH A 8 608 465 HOH HOH . E 5 HOH A 9 609 466 HOH HOH . E 5 HOH A 10 610 467 HOH HOH . E 5 HOH A 11 611 468 HOH HOH . E 5 HOH A 12 612 469 HOH HOH . E 5 HOH A 13 613 470 HOH HOH . E 5 HOH A 14 614 471 HOH HOH . E 5 HOH A 15 615 472 HOH HOH . E 5 HOH A 16 616 473 HOH HOH . E 5 HOH A 17 617 474 HOH HOH . E 5 HOH A 18 618 475 HOH HOH . E 5 HOH A 19 619 476 HOH HOH . E 5 HOH A 20 620 477 HOH HOH . E 5 HOH A 21 621 478 HOH HOH . E 5 HOH A 22 622 479 HOH HOH . E 5 HOH A 23 623 480 HOH HOH . E 5 HOH A 24 624 481 HOH HOH . E 5 HOH A 25 625 482 HOH HOH . E 5 HOH A 26 626 483 HOH HOH . E 5 HOH A 27 627 484 HOH HOH . E 5 HOH A 28 628 485 HOH HOH . E 5 HOH A 29 629 486 HOH HOH . E 5 HOH A 30 630 487 HOH HOH . E 5 HOH A 31 631 488 HOH HOH . E 5 HOH A 32 632 489 HOH HOH . E 5 HOH A 33 633 490 HOH HOH . E 5 HOH A 34 634 491 HOH HOH . E 5 HOH A 35 635 492 HOH HOH . E 5 HOH A 36 636 493 HOH HOH . E 5 HOH A 37 637 494 HOH HOH . E 5 HOH A 38 638 495 HOH HOH . E 5 HOH A 39 639 496 HOH HOH . E 5 HOH A 40 640 497 HOH HOH . E 5 HOH A 41 641 498 HOH HOH . E 5 HOH A 42 642 499 HOH HOH . E 5 HOH A 43 643 500 HOH HOH . E 5 HOH A 44 644 501 HOH HOH . E 5 HOH A 45 645 502 HOH HOH . E 5 HOH A 46 646 503 HOH HOH . E 5 HOH A 47 647 504 HOH HOH . E 5 HOH A 48 648 505 HOH HOH . E 5 HOH A 49 649 506 HOH HOH . E 5 HOH A 50 650 507 HOH HOH . E 5 HOH A 51 651 508 HOH HOH . E 5 HOH A 52 652 509 HOH HOH . E 5 HOH A 53 653 510 HOH HOH . E 5 HOH A 54 654 511 HOH HOH . E 5 HOH A 55 655 512 HOH HOH . E 5 HOH A 56 656 513 HOH HOH . E 5 HOH A 57 657 514 HOH HOH . E 5 HOH A 58 658 515 HOH HOH . E 5 HOH A 59 659 516 HOH HOH . E 5 HOH A 60 660 517 HOH HOH . E 5 HOH A 61 661 518 HOH HOH . E 5 HOH A 62 662 519 HOH HOH . E 5 HOH A 63 663 520 HOH HOH . E 5 HOH A 64 664 521 HOH HOH . E 5 HOH A 65 665 522 HOH HOH . E 5 HOH A 66 666 523 HOH HOH . E 5 HOH A 67 667 524 HOH HOH . E 5 HOH A 68 668 525 HOH HOH . E 5 HOH A 69 669 526 HOH HOH . E 5 HOH A 70 670 527 HOH HOH . E 5 HOH A 71 671 528 HOH HOH . E 5 HOH A 72 672 529 HOH HOH . E 5 HOH A 73 673 530 HOH HOH . E 5 HOH A 74 674 531 HOH HOH . E 5 HOH A 75 675 532 HOH HOH . E 5 HOH A 76 676 533 HOH HOH . E 5 HOH A 77 677 534 HOH HOH . E 5 HOH A 78 678 535 HOH HOH . E 5 HOH A 79 679 536 HOH HOH . E 5 HOH A 80 680 537 HOH HOH . E 5 HOH A 81 681 538 HOH HOH . E 5 HOH A 82 682 539 HOH HOH . E 5 HOH A 83 683 540 HOH HOH . E 5 HOH A 84 684 541 HOH HOH . E 5 HOH A 85 685 542 HOH HOH . E 5 HOH A 86 686 543 HOH HOH . E 5 HOH A 87 687 544 HOH HOH . E 5 HOH A 88 688 545 HOH HOH . E 5 HOH A 89 689 546 HOH HOH . E 5 HOH A 90 690 547 HOH HOH . E 5 HOH A 91 691 548 HOH HOH . E 5 HOH A 92 692 549 HOH HOH . E 5 HOH A 93 693 550 HOH HOH . E 5 HOH A 94 694 551 HOH HOH . E 5 HOH A 95 695 552 HOH HOH . E 5 HOH A 96 696 553 HOH HOH . E 5 HOH A 97 697 554 HOH HOH . E 5 HOH A 98 698 555 HOH HOH . E 5 HOH A 99 699 556 HOH HOH . E 5 HOH A 100 700 557 HOH HOH . E 5 HOH A 101 701 558 HOH HOH . E 5 HOH A 102 702 559 HOH HOH . E 5 HOH A 103 703 560 HOH HOH . E 5 HOH A 104 704 561 HOH HOH . E 5 HOH A 105 705 562 HOH HOH . E 5 HOH A 106 706 563 HOH HOH . E 5 HOH A 107 707 564 HOH HOH . E 5 HOH A 108 708 565 HOH HOH . E 5 HOH A 109 709 566 HOH HOH . E 5 HOH A 110 710 567 HOH HOH . E 5 HOH A 111 711 568 HOH HOH . E 5 HOH A 112 712 569 HOH HOH . E 5 HOH A 113 713 570 HOH HOH . E 5 HOH A 114 714 571 HOH HOH . E 5 HOH A 115 715 572 HOH HOH . E 5 HOH A 116 716 573 HOH HOH . E 5 HOH A 117 717 574 HOH HOH . E 5 HOH A 118 718 575 HOH HOH . E 5 HOH A 119 719 576 HOH HOH . E 5 HOH A 120 720 1 HOH HOH . E 5 HOH A 121 721 2 HOH HOH . E 5 HOH A 122 722 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O29 ZPG . . . D 4 14.734 -15.465 -11.133 1 86.1 ? O29 ZPG 503 A 1 HETATM 2 C C27 ZPG . . . D 4 13.702 -14.923 -10.298 1 89.32 ? C27 ZPG 503 A 1 HETATM 3 C C28 ZPG . . . D 4 13.25 -15.972 -9.259 1 88.97 ? C28 ZPG 503 A 1 HETATM 4 C C24 ZPG . . . D 4 14.185 -13.629 -9.598 1 90.2 ? C24 ZPG 503 A 1 HETATM 5 O O23 ZPG . . . D 4 15.369 -13.134 -10.248 1 91.01 ? O23 ZPG 503 A 1 HETATM 6 C C22 ZPG . . . D 4 15.231 -11.763 -10.674 1 91.68 ? C22 ZPG 503 A 1 HETATM 7 C C26 ZPG . . . D 4 15.188 -11.647 -12.208 1 90.24 ? C26 ZPG 503 A 1 HETATM 8 C C21 ZPG . . . D 4 16.43 -10.947 -10.156 1 92.34 ? C21 ZPG 503 A 1 HETATM 9 O O20 ZPG . . . D 4 16.058 -10.078 -9.062 1 92.59 ? O20 ZPG 503 A 1 HETATM 10 C C20 ZPG . . . D 4 15.279 -8.923 -9.467 1 92.55 ? C20 ZPG 503 A 1 HETATM 11 C C25 ZPG . . . D 4 15.911 -8.191 -10.67 1 91.9 ? C25 ZPG 503 A 1 HETATM 12 C C18 ZPG . . . D 4 15.126 -7.959 -8.276 1 92.45 ? C18 ZPG 503 A 1 HETATM 13 O O17 ZPG . . . D 4 15.869 -8.479 -7.165 1 92.32 ? O17 ZPG 503 A 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #