data_3V2W # _model_server_result.job_id Uor21jp-PpzDon3uPfTK6A _model_server_result.datetime_utc '2024-11-22 04:55:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3v2w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 3V2W # _exptl.entry_id 3V2W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 342.37 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '{(3R)-3-amino-4-[(3-hexylphenyl)amino]-4-oxobutyl}phosphonic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3V2W _cell.length_a 107.94 _cell.length_b 69.7 _cell.length_c 81.93 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3V2W _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 202 A CYS 184 1_555 A SG CYS 209 A CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 A SG CYS 447 A CYS 282 1_555 A SG CYS 452 A CYS 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? covale ? covale1 A ND2 ASN 48 A ASN 30 1_555 C C1 NAG . A NAG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? # _chem_comp.formula 'C16 H27 N2 O4 P' _chem_comp.formula_weight 342.37 _chem_comp.id ML5 _chem_comp.mon_nstd_flag . _chem_comp.name '{(3R)-3-amino-4-[(3-hexylphenyl)amino]-4-oxobutyl}phosphonic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 P1 ML5 doub 235 n n O2 P1 ML5 sing 236 n n P1 O4 ML5 sing 237 n n P1 C16 ML5 sing 238 n n C16 C15 ML5 sing 239 n n C15 C14 ML5 sing 240 n n N2 C14 ML5 sing 241 n n C14 C13 ML5 sing 242 n n C13 O1 ML5 doub 243 n n C13 N1 ML5 sing 244 n n N1 C5 ML5 sing 245 n n C5 C6 ML5 doub 246 n y C5 C4 ML5 sing 247 n y C6 C1 ML5 sing 248 n y C4 C3 ML5 doub 249 n y C1 C7 ML5 sing 250 n n C1 C2 ML5 doub 251 n y C7 C8 ML5 sing 252 n n C12 C11 ML5 sing 253 n n C8 C9 ML5 sing 254 n n C10 C11 ML5 sing 255 n n C10 C9 ML5 sing 256 n n C3 C2 ML5 sing 257 n y O4 H1 ML5 sing 258 n n O2 H2 ML5 sing 259 n n C16 H3 ML5 sing 260 n n C16 H4 ML5 sing 261 n n C15 H5 ML5 sing 262 n n C15 H6 ML5 sing 263 n n C14 H7 ML5 sing 264 n n N2 H8 ML5 sing 265 n n N2 H9 ML5 sing 266 n n N1 H11 ML5 sing 267 n n C4 H12 ML5 sing 268 n n C3 H13 ML5 sing 269 n n C2 H14 ML5 sing 270 n n C6 H15 ML5 sing 271 n n C7 H16 ML5 sing 272 n n C7 H17 ML5 sing 273 n n C8 H18 ML5 sing 274 n n C8 H19 ML5 sing 275 n n C9 H20 ML5 sing 276 n n C9 H21 ML5 sing 277 n n C10 H22 ML5 sing 278 n n C10 H23 ML5 sing 279 n n C11 H24 ML5 sing 280 n n C11 H25 ML5 sing 281 n n C12 H26 ML5 sing 282 n n C12 H27 ML5 sing 283 n n C12 H28 ML5 sing 284 n n # _atom_sites.entry_id 3V2W _atom_sites.fract_transf_matrix[1][1] 0.009264 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014347 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012206 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ML5 A 1 1201 1201 ML5 W14 . C 3 NAG A 1 1202 1202 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O4 ML5 . . . B 2 3.019 17.282 -14.222 1 85.23 ? O4 ML5 1201 A 1 HETATM 2 P P1 ML5 . . . B 2 3.207 15.798 -14.426 1 87.62 ? P1 ML5 1201 A 1 HETATM 3 O O2 ML5 . . . B 2 1.909 15.04 -14.614 1 85.12 ? O2 ML5 1201 A 1 HETATM 4 O O3 ML5 . . . B 2 4.263 15.465 -15.454 1 89.41 ? O3 ML5 1201 A 1 HETATM 5 C C16 ML5 . . . B 2 3.896 15.175 -12.864 1 87.69 ? C16 ML5 1201 A 1 HETATM 6 C C15 ML5 . . . B 2 4.171 16.309 -11.872 1 86.1 ? C15 ML5 1201 A 1 HETATM 7 C C14 ML5 . . . B 2 3.182 16.358 -10.701 1 85.14 ? C14 ML5 1201 A 1 HETATM 8 N N2 ML5 . . . B 2 2.035 15.419 -10.871 1 85.47 ? N2 ML5 1201 A 1 HETATM 9 C C13 ML5 . . . B 2 3.886 16.134 -9.393 1 84.6 ? C13 ML5 1201 A 1 HETATM 10 O O1 ML5 . . . B 2 4.276 15.017 -9.107 1 85.31 ? O1 ML5 1201 A 1 HETATM 11 N N1 ML5 . . . B 2 3.996 17.198 -8.589 1 83.35 ? N1 ML5 1201 A 1 HETATM 12 C C5 ML5 . . . B 2 4.858 17.299 -7.543 1 82.85 ? C5 ML5 1201 A 1 HETATM 13 C C4 ML5 . . . B 2 4.961 16.286 -6.581 1 82.92 ? C4 ML5 1201 A 1 HETATM 14 C C3 ML5 . . . B 2 5.834 16.428 -5.501 1 82.46 ? C3 ML5 1201 A 1 HETATM 15 C C2 ML5 . . . B 2 6.569 17.606 -5.342 1 81.87 ? C2 ML5 1201 A 1 HETATM 16 C C6 ML5 . . . B 2 5.587 18.481 -7.371 1 82.34 ? C6 ML5 1201 A 1 HETATM 17 C C1 ML5 . . . B 2 6.458 18.63 -6.286 1 81.78 ? C1 ML5 1201 A 1 HETATM 18 C C7 ML5 . . . B 2 7.24 19.917 -6.118 1 76.42 ? C7 ML5 1201 A 1 HETATM 19 C C8 ML5 . . . B 2 8.718 19.634 -5.864 1 74.72 ? C8 ML5 1201 A 1 HETATM 20 C C9 ML5 . . . B 2 9.456 20.907 -5.46 1 71.88 ? C9 ML5 1201 A 1 HETATM 21 C C10 ML5 . . . B 2 10.948 20.785 -5.743 1 70.58 ? C10 ML5 1201 A 1 HETATM 22 C C11 ML5 . . . B 2 11.639 22.139 -5.641 1 69.42 ? C11 ML5 1201 A 1 HETATM 23 C C12 ML5 . . . B 2 13.109 22.044 -5.986 1 69.26 ? C12 ML5 1201 A 1 # _model_server_stats.io_time_ms 84 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #