data_3V2Y # _model_server_result.job_id jIz1OUKe-IbQKm7DPiUsSg _model_server_result.datetime_utc '2024-12-09 08:09:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3v2y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 3V2Y # _exptl.entry_id 3V2Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 342.37 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '{(3R)-3-amino-4-[(3-hexylphenyl)amino]-4-oxobutyl}phosphonic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3V2Y _cell.length_a 107.94 _cell.length_b 69.7 _cell.length_c 81.93 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3V2Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 202 A CYS 184 1_555 A SG CYS 209 A CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 447 A CYS 282 1_555 A SG CYS 452 A CYS 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 A ND2 ASN 48 A ASN 30 1_555 C C1 NAG . A NAG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? # _chem_comp.formula 'C16 H27 N2 O4 P' _chem_comp.formula_weight 342.37 _chem_comp.id ML5 _chem_comp.mon_nstd_flag . _chem_comp.name '{(3R)-3-amino-4-[(3-hexylphenyl)amino]-4-oxobutyl}phosphonic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 P1 ML5 doub 237 n n O2 P1 ML5 sing 238 n n P1 O4 ML5 sing 239 n n P1 C16 ML5 sing 240 n n C16 C15 ML5 sing 241 n n C15 C14 ML5 sing 242 n n N2 C14 ML5 sing 243 n n C14 C13 ML5 sing 244 n n C13 O1 ML5 doub 245 n n C13 N1 ML5 sing 246 n n N1 C5 ML5 sing 247 n n C5 C6 ML5 doub 248 n y C5 C4 ML5 sing 249 n y C6 C1 ML5 sing 250 n y C4 C3 ML5 doub 251 n y C1 C7 ML5 sing 252 n n C1 C2 ML5 doub 253 n y C7 C8 ML5 sing 254 n n C12 C11 ML5 sing 255 n n C8 C9 ML5 sing 256 n n C10 C11 ML5 sing 257 n n C10 C9 ML5 sing 258 n n C3 C2 ML5 sing 259 n y O4 H1 ML5 sing 260 n n O2 H2 ML5 sing 261 n n C16 H3 ML5 sing 262 n n C16 H4 ML5 sing 263 n n C15 H5 ML5 sing 264 n n C15 H6 ML5 sing 265 n n C14 H7 ML5 sing 266 n n N2 H8 ML5 sing 267 n n N2 H9 ML5 sing 268 n n N1 H11 ML5 sing 269 n n C4 H12 ML5 sing 270 n n C3 H13 ML5 sing 271 n n C2 H14 ML5 sing 272 n n C6 H15 ML5 sing 273 n n C7 H16 ML5 sing 274 n n C7 H17 ML5 sing 275 n n C8 H18 ML5 sing 276 n n C8 H19 ML5 sing 277 n n C9 H20 ML5 sing 278 n n C9 H21 ML5 sing 279 n n C10 H22 ML5 sing 280 n n C10 H23 ML5 sing 281 n n C11 H24 ML5 sing 282 n n C11 H25 ML5 sing 283 n n C12 H26 ML5 sing 284 n n C12 H27 ML5 sing 285 n n C12 H28 ML5 sing 286 n n # _atom_sites.entry_id 3V2Y _atom_sites.fract_transf_matrix[1][1] 0.009264 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014347 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012206 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ML5 A 1 1201 1201 ML5 W14 . C 3 NAG A 1 1202 1202 NAG NAG . D 4 HOH A 1 1203 1203 HOH HOH . D 4 HOH A 2 1204 1204 HOH HOH . D 4 HOH A 3 1205 1205 HOH HOH . D 4 HOH A 4 1206 1206 HOH HOH . D 4 HOH A 5 1207 1207 HOH HOH . D 4 HOH A 6 1208 1208 HOH HOH . D 4 HOH A 7 1209 1209 HOH HOH . D 4 HOH A 8 1210 1210 HOH HOH . D 4 HOH A 9 1211 1211 HOH HOH . D 4 HOH A 10 1212 1212 HOH HOH . D 4 HOH A 11 1213 1213 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O4 ML5 . . . B 2 1.859 15.406 -15.112 1 61.98 ? O4 ML5 1201 A 1 HETATM 2 P P1 ML5 . . . B 2 2.958 15.961 -14.23 1 63.34 ? P1 ML5 1201 A 1 HETATM 3 O O2 ML5 . . . B 2 4.257 16.223 -14.961 1 61.32 -1 O2 ML5 1201 A 1 HETATM 4 O O3 ML5 . . . B 2 2.513 17.1 -13.343 1 63.92 -1 O3 ML5 1201 A 1 HETATM 5 C C16 ML5 . . . B 2 3.339 14.62 -13.065 1 61.02 ? C16 ML5 1201 A 1 HETATM 6 C C15 ML5 . . . B 2 4.228 15.142 -11.935 1 59.17 ? C15 ML5 1201 A 1 HETATM 7 C C14 ML5 . . . B 2 3.498 16.07 -10.953 1 57.23 ? C14 ML5 1201 A 1 HETATM 8 N N2 ML5 . . . B 2 2.027 15.824 -10.929 1 55.96 ? N2 ML5 1201 A 1 HETATM 9 C C13 ML5 . . . B 2 4.104 15.918 -9.586 1 57.2 ? C13 ML5 1201 A 1 HETATM 10 O O1 ML5 . . . B 2 3.974 14.863 -8.984 1 57.79 ? O1 ML5 1201 A 1 HETATM 11 N N1 ML5 . . . B 2 4.792 16.977 -9.133 1 56.97 ? N1 ML5 1201 A 1 HETATM 12 C C5 ML5 . . . B 2 5.183 17.183 -7.838 1 58.11 ? C5 ML5 1201 A 1 HETATM 13 C C4 ML5 . . . B 2 4.971 16.239 -6.821 1 58.07 ? C4 ML5 1201 A 1 HETATM 14 C C3 ML5 . . . B 2 5.409 16.496 -5.517 1 57.44 ? C3 ML5 1201 A 1 HETATM 15 C C2 ML5 . . . B 2 6.067 17.694 -5.218 1 56.94 ? C2 ML5 1201 A 1 HETATM 16 C C6 ML5 . . . B 2 5.856 18.372 -7.53 1 57.95 ? C6 ML5 1201 A 1 HETATM 17 C C1 ML5 . . . B 2 6.314 18.621 -6.233 1 57.27 ? C1 ML5 1201 A 1 HETATM 18 C C7 ML5 . . . B 2 6.996 19.936 -5.924 1 58.74 ? C7 ML5 1201 A 1 HETATM 19 C C8 ML5 . . . B 2 8.438 19.706 -5.492 1 59.5 ? C8 ML5 1201 A 1 HETATM 20 C C9 ML5 . . . B 2 9.242 20.998 -5.618 1 58.43 ? C9 ML5 1201 A 1 HETATM 21 C C10 ML5 . . . B 2 10.511 20.78 -6.434 1 57.39 ? C10 ML5 1201 A 1 HETATM 22 C C11 ML5 . . . B 2 11.75 21.017 -5.582 1 56.6 ? C11 ML5 1201 A 1 HETATM 23 C C12 ML5 . . . B 2 12.527 22.221 -6.067 1 56.83 ? C12 ML5 1201 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 23 #