data_3V2Y
#
_model_server_result.job_id            3yFLKEHSpg35X-6Tl_bNLw 
_model_server_result.datetime_utc      '2024-11-21 23:20:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3v2y 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1202}' 
#
_entry.id    3V2Y 
#
_exptl.entry_id    3V2Y 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3V2Y 
_cell.length_a            107.94 
_cell.length_b            69.7 
_cell.length_c            81.93 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3V2Y 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 202 A CYS 184 1_555 A SG CYS 209 A CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf2 A SG CYS 447 A CYS 282 1_555 A SG CYS 452 A CYS 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
covale ? covale1 A ND2 ASN 48 A ASN 30 1_555 C C1 NAG . A NAG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 287 n n 
C1 O1 NAG sing 288 n n 
C1 O5 NAG sing 289 n n 
C1 H1 NAG sing 290 n n 
C2 C3 NAG sing 291 n n 
C2 N2 NAG sing 292 n n 
C2 H2 NAG sing 293 n n 
C3 C4 NAG sing 294 n n 
C3 O3 NAG sing 295 n n 
C3 H3 NAG sing 296 n n 
C4 C5 NAG sing 297 n n 
C4 O4 NAG sing 298 n n 
C4 H4 NAG sing 299 n n 
C5 C6 NAG sing 300 n n 
C5 O5 NAG sing 301 n n 
C5 H5 NAG sing 302 n n 
C6 O6 NAG sing 303 n n 
C6 H61 NAG sing 304 n n 
C6 H62 NAG sing 305 n n 
C7 C8 NAG sing 306 n n 
C7 N2 NAG sing 307 n n 
C7 O7 NAG doub 308 n n 
C8 H81 NAG sing 309 n n 
C8 H82 NAG sing 310 n n 
C8 H83 NAG sing 311 n n 
N2 HN2 NAG sing 312 n n 
O1 HO1 NAG sing 313 n n 
O3 HO3 NAG sing 314 n n 
O4 HO4 NAG sing 315 n n 
O6 HO6 NAG sing 316 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     3V2Y 
_atom_sites.fract_transf_matrix[1][1]    0.009264 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014347 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012206 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ML5 A 1 1201 1201 ML5 W14 . 
C 3 NAG A 1 1202 1202 NAG NAG . 
D 4 HOH A 1 1203 1203 HOH HOH . 
D 4 HOH A 2 1204 1204 HOH HOH . 
D 4 HOH A 3 1205 1205 HOH HOH . 
D 4 HOH A 4 1206 1206 HOH HOH . 
D 4 HOH A 5 1207 1207 HOH HOH . 
D 4 HOH A 6 1208 1208 HOH HOH . 
D 4 HOH A 7 1209 1209 HOH HOH . 
D 4 HOH A 8 1210 1210 HOH HOH . 
D 4 HOH A 9 1211 1211 HOH HOH . 
D 4 HOH A 10 1212 1212 HOH HOH . 
D 4 HOH A 11 1213 1213 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . C 3 3.028 18.355 -31.468 1 93.65 ? C1 NAG 1202 A 1 
HETATM 2 C C2 NAG . . . C 3 4.312 17.9 -32.27 1 96.98 ? C2 NAG 1202 A 1 
HETATM 3 C C3 NAG . . . C 3 3.859 17.432 -33.692 1 99.98 ? C3 NAG 1202 A 1 
HETATM 4 C C4 NAG . . . C 3 2.619 16.48 -33.67 1 100.69 ? C4 NAG 1202 A 1 
HETATM 5 C C5 NAG . . . C 3 1.486 17.107 -32.792 1 98.15 ? C5 NAG 1202 A 1 
HETATM 6 C C6 NAG . . . C 3 0.231 16.216 -32.618 1 99.38 ? C6 NAG 1202 A 1 
HETATM 7 C C7 NAG . . . C 3 6.708 18.794 -32.145 1 99.75 ? C7 NAG 1202 A 1 
HETATM 8 C C8 NAG . . . C 3 7.525 20.049 -32.331 1 100.34 ? C8 NAG 1202 A 1 
HETATM 9 N N2 NAG . . . C 3 5.35 18.965 -32.379 1 97.87 ? N2 NAG 1202 A 1 
HETATM 10 O O3 NAG . . . C 3 4.968 16.803 -34.352 1 103.62 ? O3 NAG 1202 A 1 
HETATM 11 O O4 NAG . . . C 3 2.158 16.32 -35.023 1 104.48 ? O4 NAG 1202 A 1 
HETATM 12 O O5 NAG . . . C 3 1.997 17.358 -31.486 1 95.2 ? O5 NAG 1202 A 1 
HETATM 13 O O6 NAG . . . C 3 -0.673 16.751 -31.63 1 99.66 ? O6 NAG 1202 A 1 
HETATM 14 O O7 NAG . . . C 3 7.218 17.723 -31.814 1 102.25 ? O7 NAG 1202 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#