data_3V2Z # _model_server_result.job_id 4ysvsoHEY0_6ZQwEs84NVQ _model_server_result.datetime_utc '2024-12-27 03:50:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3v2z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":154}' # _entry.id 3V2Z # _exptl.entry_id 3V2Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 602.504 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Fe(III) pyropheophorbide-a methyl ester' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.94 _cell.angle_gamma 90 _cell.entry_id 3V2Z _cell.length_a 34.285 _cell.length_b 30.36 _cell.length_c 64.06 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3V2Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 93 A HIS 93 1_555 B FE HKL . A HKL 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc2 B FE HKL . A HKL 154 1_555 C N NO2 . A NO2 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? # _chem_comp.formula 'C34 H34 Fe N4 O3' _chem_comp.formula_weight 602.504 _chem_comp.id HKL _chem_comp.mon_nstd_flag . _chem_comp.name 'Fe(III) pyropheophorbide-a methyl ester' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C1 HKL sing 137 n y N1 FE HKL sing 138 n n C1 C34 HKL sing 139 n n C2 C1 HKL doub 140 n y C7 N1 HKL sing 141 n y C6 H6 HKL sing 142 n n C6 H6A HKL sing 143 n n C5 C6 HKL doub 144 n n C5 C4 HKL sing 145 n n C5 H5 HKL sing 146 n n C4 C2 HKL sing 147 n y C4 C7 HKL doub 148 n y C3 C2 HKL sing 149 n n C3 H3 HKL sing 150 n n C3 H3A HKL sing 151 n n C3 H3B HKL sing 152 n n N2 C15 HKL doub 153 n n N2 FE HKL sing 154 n n C21 O1 HKL doub 155 n n C20 C21 HKL sing 156 n n C23 C20 HKL sing 157 n n C23 C24 HKL doub 158 n n C24 C22 HKL sing 159 n n C22 C21 HKL sing 160 n n C22 H22 HKL sing 161 n n C22 H22A HKL sing 162 n n C18 C20 HKL doub 163 n n C18 C19 HKL sing 164 n n C19 H19 HKL sing 165 n n C19 H19A HKL sing 166 n n C19 H19B HKL sing 167 n n C17 C18 HKL sing 168 n n N3 C23 HKL sing 169 n n N3 C17 HKL sing 170 n n C16 C17 HKL doub 171 n n C16 H16 HKL sing 172 n n C15 C16 HKL sing 173 n n C12 C15 HKL sing 174 n n C12 C13 HKL sing 175 n n C13 C14 HKL sing 176 n n C13 H13 HKL sing 177 n n C13 H13A HKL sing 178 n n C14 H14 HKL sing 179 n n C14 H14A HKL sing 180 n n C14 H14B HKL sing 181 n n C10 C12 HKL doub 182 n n C10 C9 HKL sing 183 n n C11 C10 HKL sing 184 n n C11 H11 HKL sing 185 n n C11 H11A HKL sing 186 n n C11 H11B HKL sing 187 n n C9 N2 HKL sing 188 n n C8 C7 HKL sing 189 n n C8 C9 HKL doub 190 n n C8 H8 HKL sing 191 n n C34 C33 HKL doub 192 n n C34 H34 HKL sing 193 n n FE N3 HKL sing 194 n n FE N4 HKL sing 195 n n N4 C33 HKL sing 196 n n N4 C25 HKL doub 197 n n C25 C24 HKL sing 198 n n C25 C26 HKL sing 199 n n C33 C31 HKL sing 200 n n C31 C32 HKL sing 201 n n C32 H32 HKL sing 202 n n C32 H32A HKL sing 203 n n C32 H32B HKL sing 204 n n C26 C31 HKL sing 205 n n C27 C26 HKL sing 206 n n C27 H27 HKL sing 207 n n C27 H27A HKL sing 208 n n C28 C27 HKL sing 209 n n C28 H28 HKL sing 210 n n C28 H28A HKL sing 211 n n C29 C28 HKL sing 212 n n O4 C29 HKL doub 213 n n O2 C29 HKL sing 214 n n C30 O2 HKL sing 215 n n C30 H30 HKL sing 216 n n C30 H30A HKL sing 217 n n C30 H30B HKL sing 218 n n C31 H33 HKL sing 219 n n C26 H341 HKL sing 220 n n # _atom_sites.entry_id 3V2Z _atom_sites.fract_transf_matrix[1][1] 0.029168 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007783 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.032938 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016157 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HKL A 1 154 1 HKL HKL . C 3 NO2 A 1 155 1 NO2 NO2 . D 3 NO2 A 1 156 2 NO2 NO2 . E 4 SO4 A 1 157 3 SO4 SO4 . F 4 SO4 A 1 158 4 SO4 SO4 . G 5 HOH A 1 159 1 HOH HOH . G 5 HOH A 2 160 2 HOH HOH . G 5 HOH A 3 161 3 HOH HOH . G 5 HOH A 4 162 4 HOH HOH . G 5 HOH A 5 163 5 HOH HOH . G 5 HOH A 6 164 6 HOH HOH . G 5 HOH A 7 165 7 HOH HOH . G 5 HOH A 8 166 8 HOH HOH . G 5 HOH A 9 167 9 HOH HOH . G 5 HOH A 10 168 10 HOH HOH . G 5 HOH A 11 169 11 HOH HOH . G 5 HOH A 12 170 12 HOH HOH . G 5 HOH A 13 171 13 HOH HOH . G 5 HOH A 14 172 14 HOH HOH . G 5 HOH A 15 173 15 HOH HOH . G 5 HOH A 16 174 16 HOH HOH . G 5 HOH A 17 175 17 HOH HOH . G 5 HOH A 18 176 18 HOH HOH . G 5 HOH A 19 177 19 HOH HOH . G 5 HOH A 20 178 20 HOH HOH . G 5 HOH A 21 179 21 HOH HOH . G 5 HOH A 22 180 22 HOH HOH . G 5 HOH A 23 181 23 HOH HOH . G 5 HOH A 24 182 24 HOH HOH . G 5 HOH A 25 183 25 HOH HOH . G 5 HOH A 26 184 26 HOH HOH . G 5 HOH A 27 185 27 HOH HOH . G 5 HOH A 28 186 28 HOH HOH . G 5 HOH A 29 187 29 HOH HOH . G 5 HOH A 30 188 30 HOH HOH . G 5 HOH A 31 189 31 HOH HOH . G 5 HOH A 32 190 32 HOH HOH . G 5 HOH A 33 191 33 HOH HOH . G 5 HOH A 34 192 34 HOH HOH . G 5 HOH A 35 193 35 HOH HOH . G 5 HOH A 36 194 36 HOH HOH . G 5 HOH A 37 195 37 HOH HOH . G 5 HOH A 38 196 38 HOH HOH . G 5 HOH A 39 197 39 HOH HOH . G 5 HOH A 40 198 40 HOH HOH . G 5 HOH A 41 199 41 HOH HOH . G 5 HOH A 42 200 42 HOH HOH . G 5 HOH A 43 201 43 HOH HOH . G 5 HOH A 44 202 44 HOH HOH . G 5 HOH A 45 203 45 HOH HOH . G 5 HOH A 46 204 46 HOH HOH . G 5 HOH A 47 205 47 HOH HOH . G 5 HOH A 48 206 48 HOH HOH . G 5 HOH A 49 207 49 HOH HOH . G 5 HOH A 50 208 50 HOH HOH . G 5 HOH A 51 209 51 HOH HOH . G 5 HOH A 52 210 52 HOH HOH . G 5 HOH A 53 211 53 HOH HOH . G 5 HOH A 54 212 54 HOH HOH . G 5 HOH A 55 213 55 HOH HOH . G 5 HOH A 56 214 56 HOH HOH . G 5 HOH A 57 215 57 HOH HOH . G 5 HOH A 58 216 58 HOH HOH . G 5 HOH A 59 217 59 HOH HOH . G 5 HOH A 60 218 60 HOH HOH . G 5 HOH A 61 219 61 HOH HOH . G 5 HOH A 62 220 62 HOH HOH . G 5 HOH A 63 221 63 HOH HOH . G 5 HOH A 64 222 64 HOH HOH . G 5 HOH A 65 223 65 HOH HOH . G 5 HOH A 66 224 66 HOH HOH . G 5 HOH A 67 225 67 HOH HOH . G 5 HOH A 68 226 68 HOH HOH . G 5 HOH A 69 227 69 HOH HOH . G 5 HOH A 70 228 70 HOH HOH . G 5 HOH A 71 229 71 HOH HOH . G 5 HOH A 72 230 72 HOH HOH . G 5 HOH A 73 231 73 HOH HOH . G 5 HOH A 74 232 74 HOH HOH . G 5 HOH A 75 233 75 HOH HOH . G 5 HOH A 76 234 76 HOH HOH . G 5 HOH A 77 235 77 HOH HOH . G 5 HOH A 78 236 78 HOH HOH . G 5 HOH A 79 237 79 HOH HOH . G 5 HOH A 80 238 80 HOH HOH . G 5 HOH A 81 239 81 HOH HOH . G 5 HOH A 82 240 82 HOH HOH . G 5 HOH A 83 241 83 HOH HOH . G 5 HOH A 84 242 84 HOH HOH . G 5 HOH A 85 243 85 HOH HOH . G 5 HOH A 86 244 86 HOH HOH . G 5 HOH A 87 245 87 HOH HOH . G 5 HOH A 88 246 88 HOH HOH . G 5 HOH A 89 247 89 HOH HOH . G 5 HOH A 90 248 90 HOH HOH . G 5 HOH A 91 249 91 HOH HOH . G 5 HOH A 92 250 92 HOH HOH . G 5 HOH A 93 251 93 HOH HOH . G 5 HOH A 94 252 94 HOH HOH . G 5 HOH A 95 253 95 HOH HOH . G 5 HOH A 96 254 96 HOH HOH . G 5 HOH A 97 255 97 HOH HOH . G 5 HOH A 98 256 98 HOH HOH . G 5 HOH A 99 257 99 HOH HOH . G 5 HOH A 100 258 100 HOH HOH . G 5 HOH A 101 259 101 HOH HOH . G 5 HOH A 102 260 102 HOH HOH . G 5 HOH A 103 261 103 HOH HOH . G 5 HOH A 104 262 104 HOH HOH . G 5 HOH A 105 263 105 HOH HOH . G 5 HOH A 106 264 106 HOH HOH . G 5 HOH A 107 265 107 HOH HOH . G 5 HOH A 108 266 108 HOH HOH . G 5 HOH A 109 267 109 HOH HOH . G 5 HOH A 110 268 110 HOH HOH . G 5 HOH A 111 269 111 HOH HOH . G 5 HOH A 112 270 112 HOH HOH . G 5 HOH A 113 271 113 HOH HOH . G 5 HOH A 114 272 114 HOH HOH . G 5 HOH A 115 273 115 HOH HOH . G 5 HOH A 116 274 116 HOH HOH . G 5 HOH A 117 275 117 HOH HOH . G 5 HOH A 118 276 118 HOH HOH . G 5 HOH A 119 277 119 HOH HOH . G 5 HOH A 120 278 120 HOH HOH . G 5 HOH A 121 279 121 HOH HOH . G 5 HOH A 122 280 122 HOH HOH . G 5 HOH A 123 281 123 HOH HOH . G 5 HOH A 124 282 124 HOH HOH . G 5 HOH A 125 283 125 HOH HOH . G 5 HOH A 126 284 126 HOH HOH . G 5 HOH A 127 285 127 HOH HOH . G 5 HOH A 128 286 128 HOH HOH . G 5 HOH A 129 287 129 HOH HOH . G 5 HOH A 130 288 130 HOH HOH . G 5 HOH A 131 289 131 HOH HOH . G 5 HOH A 132 290 132 HOH HOH . G 5 HOH A 133 291 133 HOH HOH . G 5 HOH A 134 292 134 HOH HOH . G 5 HOH A 135 293 135 HOH HOH . G 5 HOH A 136 294 136 HOH HOH . G 5 HOH A 137 295 137 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 HKL . . . B 2 2.882 -4.627 14.697 1 14.35 ? N1 HKL 154 A 1 HETATM 2 C C1 HKL . . . B 2 4.198 -4.922 14.826 1 12.6 ? C1 HKL 154 A 1 HETATM 3 C C2 HKL . . . B 2 4.934 -3.86 14.368 1 15.46 ? C2 HKL 154 A 1 HETATM 4 C C7 HKL . . . B 2 2.736 -3.402 14.118 1 9.6 ? C7 HKL 154 A 1 HETATM 5 C C6 HKL . A . B 2 4.601 -0.62 14.449 0.5 5.79 ? C6 HKL 154 A 1 HETATM 6 C C6 HKL . B . B 2 3.937 -1.127 12.197 0.5 11.88 ? C6 HKL 154 A 1 HETATM 7 C C5 HKL . . . B 2 4.358 -1.461 13.398 1 13.47 ? C5 HKL 154 A 1 HETATM 8 C C4 HKL . . . B 2 3.994 -2.838 13.92 1 13.09 ? C4 HKL 154 A 1 HETATM 9 C C3 HKL . . . B 2 6.439 -3.743 14.384 1 17.16 ? C3 HKL 154 A 1 HETATM 10 N N2 HKL . . . B 2 -0.053 -4.449 14.566 1 10.23 ? N2 HKL 154 A 1 HETATM 11 O O1 HKL . . . B 2 -1.792 -10.886 17.382 1 27.3 ? O1 HKL 154 A 1 HETATM 12 C C21 HKL . . . B 2 -0.843 -10.115 16.954 1 23.1 ? C21 HKL 154 A 1 HETATM 13 C C20 HKL . . . B 2 -1.272 -8.919 16.465 1 20.46 ? C20 HKL 154 A 1 HETATM 14 C C23 HKL . . . B 2 -0.13 -8.318 16.117 1 17.75 ? C23 HKL 154 A 1 HETATM 15 C C24 HKL . . . B 2 1.062 -9.052 16.402 1 18.68 ? C24 HKL 154 A 1 HETATM 16 C C22 HKL . . . B 2 0.56 -10.271 16.933 1 23.2 ? C22 HKL 154 A 1 HETATM 17 C C18 HKL . . . B 2 -2.28 -7.914 16.085 1 19 ? C18 HKL 154 A 1 HETATM 18 C C19 HKL . . . B 2 -3.743 -8.061 16.22 1 14.71 ? C19 HKL 154 A 1 HETATM 19 C C17 HKL . . . B 2 -1.574 -6.801 15.562 1 15.67 ? C17 HKL 154 A 1 HETATM 20 N N3 HKL . . . B 2 -0.267 -7.075 15.584 1 15.1 ? N3 HKL 154 A 1 HETATM 21 C C16 HKL . . . B 2 -2.094 -5.658 15.149 1 12.07 ? C16 HKL 154 A 1 HETATM 22 C C15 HKL . . . B 2 -1.411 -4.557 14.735 1 9.81 ? C15 HKL 154 A 1 HETATM 23 C C12 HKL . . . B 2 -2.012 -3.335 14.343 1 10.53 ? C12 HKL 154 A 1 HETATM 24 C C13 HKL . . . B 2 -3.496 -2.966 14.325 1 13.16 ? C13 HKL 154 A 1 HETATM 25 C C14 HKL . . . B 2 -3.934 -2.251 15.575 1 23.19 ? C14 HKL 154 A 1 HETATM 26 C C10 HKL . . . B 2 -0.935 -2.463 13.902 1 9.31 ? C10 HKL 154 A 1 HETATM 27 C C11 HKL . . . B 2 -1.028 -1.034 13.378 1 10.28 ? C11 HKL 154 A 1 HETATM 28 C C9 HKL . . . B 2 0.3 -3.223 14.104 1 8.44 ? C9 HKL 154 A 1 HETATM 29 C C8 HKL . . . B 2 1.563 -2.779 13.86 1 8.82 ? C8 HKL 154 A 1 HETATM 30 C C34 HKL . . . B 2 4.69 -6.061 15.329 1 13.95 ? C34 HKL 154 A 1 HETATM 31 FE FE HKL . . . B 2 1.313 -5.883 15.107 1 13.47 ? FE HKL 154 A 1 HETATM 32 N N4 HKL . . . B 2 2.639 -7.255 15.688 1 15.71 ? N4 HKL 154 A 1 HETATM 33 C C25 HKL . . . B 2 2.4 -8.492 16.092 1 19.28 ? C25 HKL 154 A 1 HETATM 34 C C33 HKL . . . B 2 3.992 -7.05 15.725 1 14.47 ? C33 HKL 154 A 1 HETATM 35 C C31 HKL . . . B 2 4.682 -8.222 16.337 1 19.95 ? C31 HKL 154 A 1 HETATM 36 C C32 HKL . . . B 2 5.124 -8.114 17.797 1 19.08 ? C32 HKL 154 A 1 HETATM 37 C C26 HKL . . . B 2 3.666 -9.332 16.126 1 21.73 ? C26 HKL 154 A 1 HETATM 38 C C27 HKL . . . B 2 4.023 -10.427 15.059 1 23.17 ? C27 HKL 154 A 1 HETATM 39 C C28 HKL . . . B 2 5.526 -10.776 14.709 1 24.08 ? C28 HKL 154 A 1 HETATM 40 C C29 HKL . . . B 2 5.856 -11.392 13.331 1 23.82 ? C29 HKL 154 A 1 HETATM 41 O O4 HKL . . . B 2 5.034 -11.412 12.284 1 25.87 ? O4 HKL 154 A 1 HETATM 42 O O2 HKL . . . B 2 7.147 -12.045 13.078 1 27.74 ? O2 HKL 154 A 1 HETATM 43 C C30 HKL . . . B 2 7.518 -12.43 11.74 1 21.11 ? C30 HKL 154 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #