data_3V31
#
_model_server_result.job_id            VNEGSr5-92OR7YSfKbpzRw 
_model_server_result.datetime_utc      '2024-11-05 04:45:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3v31 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":402}' 
#
_entry.id    3V31 
#
_exptl.entry_id    3V31 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          98.01 
_cell.angle_gamma         90 
_cell.entry_id            3V31 
_cell.length_a            29.663 
_cell.length_b            52.822 
_cell.length_c            51.556 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3V31 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C ACE 1 B ACE 0 1_555 B N LEU 2 B LEU 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? 
metalc ? metalc1 A O CYS 91 A CYS 237 1_555 D NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? 
metalc ? metalc2 A O LEU 159 A LEU 305 1_555 E NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? 
metalc ? metalc3 A O LEU 162 A LEU 308 1_555 E NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? 
metalc ? metalc4 A O ILE 165 A ILE 311 1_555 E NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? 
metalc ? metalc5 D NA NA . A NA 402 1_555 F O HOH . A HOH 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? 
metalc ? metalc6 D NA NA . A NA 402 1_555 F O HOH . A HOH 570 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? 
metalc ? metalc7 D NA NA . A NA 402 1_555 F O HOH . A HOH 594 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3V31 
_atom_sites.fract_transf_matrix[1][1]    0.033712 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004745 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018932 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019588 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 CL A 1 401 500 CL CL . 
D 4 NA A 1 402 510 NA NA . 
E 4 NA A 1 403 511 NA NA . 
F 5 HOH A 1 501 1 HOH HOH . 
F 5 HOH A 2 502 2 HOH HOH . 
F 5 HOH A 3 503 3 HOH HOH . 
F 5 HOH A 4 504 4 HOH HOH . 
F 5 HOH A 5 505 5 HOH HOH . 
F 5 HOH A 6 506 6 HOH HOH . 
F 5 HOH A 7 507 7 HOH HOH . 
F 5 HOH A 8 508 8 HOH HOH . 
F 5 HOH A 9 509 9 HOH HOH . 
F 5 HOH A 10 510 10 HOH HOH . 
F 5 HOH A 11 511 11 HOH HOH . 
F 5 HOH A 12 512 12 HOH HOH . 
F 5 HOH A 13 513 13 HOH HOH . 
F 5 HOH A 14 514 14 HOH HOH . 
F 5 HOH A 15 515 15 HOH HOH . 
F 5 HOH A 16 516 16 HOH HOH . 
F 5 HOH A 17 517 17 HOH HOH . 
F 5 HOH A 18 518 18 HOH HOH . 
F 5 HOH A 19 519 19 HOH HOH . 
F 5 HOH A 20 520 20 HOH HOH . 
F 5 HOH A 21 521 21 HOH HOH . 
F 5 HOH A 22 522 22 HOH HOH . 
F 5 HOH A 23 523 23 HOH HOH . 
F 5 HOH A 24 524 24 HOH HOH . 
F 5 HOH A 25 525 25 HOH HOH . 
F 5 HOH A 26 526 26 HOH HOH . 
F 5 HOH A 27 527 27 HOH HOH . 
F 5 HOH A 28 528 28 HOH HOH . 
F 5 HOH A 29 529 30 HOH HOH . 
F 5 HOH A 30 530 31 HOH HOH . 
F 5 HOH A 31 531 32 HOH HOH . 
F 5 HOH A 32 532 33 HOH HOH . 
F 5 HOH A 33 533 34 HOH HOH . 
F 5 HOH A 34 534 35 HOH HOH . 
F 5 HOH A 35 535 36 HOH HOH . 
F 5 HOH A 36 536 37 HOH HOH . 
F 5 HOH A 37 537 38 HOH HOH . 
F 5 HOH A 38 538 39 HOH HOH . 
F 5 HOH A 39 539 40 HOH HOH . 
F 5 HOH A 40 540 41 HOH HOH . 
F 5 HOH A 41 541 42 HOH HOH . 
F 5 HOH A 42 542 43 HOH HOH . 
F 5 HOH A 43 543 45 HOH HOH . 
F 5 HOH A 44 544 46 HOH HOH . 
F 5 HOH A 45 545 47 HOH HOH . 
F 5 HOH A 46 546 48 HOH HOH . 
F 5 HOH A 47 547 50 HOH HOH . 
F 5 HOH A 48 548 51 HOH HOH . 
F 5 HOH A 49 549 52 HOH HOH . 
F 5 HOH A 50 550 53 HOH HOH . 
F 5 HOH A 51 551 54 HOH HOH . 
F 5 HOH A 52 552 55 HOH HOH . 
F 5 HOH A 53 553 56 HOH HOH . 
F 5 HOH A 54 554 57 HOH HOH . 
F 5 HOH A 55 555 58 HOH HOH . 
F 5 HOH A 56 556 59 HOH HOH . 
F 5 HOH A 57 557 60 HOH HOH . 
F 5 HOH A 58 558 61 HOH HOH . 
F 5 HOH A 59 559 62 HOH HOH . 
F 5 HOH A 60 560 63 HOH HOH . 
F 5 HOH A 61 561 64 HOH HOH . 
F 5 HOH A 62 562 65 HOH HOH . 
F 5 HOH A 63 563 66 HOH HOH . 
F 5 HOH A 64 564 67 HOH HOH . 
F 5 HOH A 65 565 68 HOH HOH . 
F 5 HOH A 66 566 69 HOH HOH . 
F 5 HOH A 67 567 70 HOH HOH . 
F 5 HOH A 68 568 71 HOH HOH . 
F 5 HOH A 69 569 72 HOH HOH . 
F 5 HOH A 70 570 73 HOH HOH . 
F 5 HOH A 71 571 74 HOH HOH . 
F 5 HOH A 72 572 75 HOH HOH . 
F 5 HOH A 73 573 76 HOH HOH . 
F 5 HOH A 74 574 77 HOH HOH . 
F 5 HOH A 75 575 78 HOH HOH . 
F 5 HOH A 76 576 79 HOH HOH . 
F 5 HOH A 77 577 80 HOH HOH . 
F 5 HOH A 78 578 81 HOH HOH . 
F 5 HOH A 79 579 82 HOH HOH . 
F 5 HOH A 80 580 83 HOH HOH . 
F 5 HOH A 81 581 84 HOH HOH . 
F 5 HOH A 82 582 85 HOH HOH . 
F 5 HOH A 83 583 86 HOH HOH . 
F 5 HOH A 84 584 88 HOH HOH . 
F 5 HOH A 85 585 89 HOH HOH . 
F 5 HOH A 86 586 90 HOH HOH . 
F 5 HOH A 87 587 91 HOH HOH . 
F 5 HOH A 88 588 92 HOH HOH . 
F 5 HOH A 89 589 93 HOH HOH . 
F 5 HOH A 90 590 94 HOH HOH . 
F 5 HOH A 91 591 95 HOH HOH . 
F 5 HOH A 92 592 97 HOH HOH . 
F 5 HOH A 93 593 98 HOH HOH . 
F 5 HOH A 94 594 101 HOH HOH . 
F 5 HOH A 95 595 102 HOH HOH . 
F 5 HOH A 96 596 103 HOH HOH . 
F 5 HOH A 97 597 104 HOH HOH . 
F 5 HOH A 98 598 105 HOH HOH . 
F 5 HOH A 99 599 107 HOH HOH . 
F 5 HOH A 100 600 109 HOH HOH . 
F 5 HOH A 101 601 110 HOH HOH . 
F 5 HOH A 102 602 111 HOH HOH . 
F 5 HOH A 103 603 112 HOH HOH . 
F 5 HOH A 104 604 113 HOH HOH . 
F 5 HOH A 105 605 114 HOH HOH . 
F 5 HOH A 106 606 115 HOH HOH . 
F 5 HOH A 107 607 116 HOH HOH . 
F 5 HOH A 108 608 117 HOH HOH . 
F 5 HOH A 109 609 118 HOH HOH . 
F 5 HOH A 110 610 119 HOH HOH . 
F 5 HOH A 111 611 120 HOH HOH . 
F 5 HOH A 112 612 121 HOH HOH . 
F 5 HOH A 113 613 122 HOH HOH . 
F 5 HOH A 114 614 123 HOH HOH . 
F 5 HOH A 115 615 124 HOH HOH . 
F 5 HOH A 116 616 125 HOH HOH . 
F 5 HOH A 117 617 126 HOH HOH . 
F 5 HOH A 118 618 127 HOH HOH . 
F 5 HOH A 119 619 128 HOH HOH . 
F 5 HOH A 120 620 129 HOH HOH . 
F 5 HOH A 121 621 130 HOH HOH . 
F 5 HOH A 122 622 131 HOH HOH . 
F 5 HOH A 123 623 132 HOH HOH . 
F 5 HOH A 124 624 133 HOH HOH . 
F 5 HOH A 125 625 135 HOH HOH . 
F 5 HOH A 126 626 136 HOH HOH . 
F 5 HOH A 127 627 137 HOH HOH . 
F 5 HOH A 128 628 138 HOH HOH . 
F 5 HOH A 129 629 139 HOH HOH . 
G 5 HOH B 1 101 29 HOH HOH . 
G 5 HOH B 2 102 44 HOH HOH . 
G 5 HOH B 3 103 49 HOH HOH . 
G 5 HOH B 4 104 87 HOH HOH . 
G 5 HOH B 5 105 96 HOH HOH . 
G 5 HOH B 6 106 99 HOH HOH . 
G 5 HOH B 7 107 100 HOH HOH . 
G 5 HOH B 8 108 106 HOH HOH . 
G 5 HOH B 9 109 108 HOH HOH . 
G 5 HOH B 10 110 134 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               11.695 
_atom_site.Cartn_y               -5.13 
_atom_site.Cartn_z               20.882 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        17.84 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           402 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              62 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#