data_3V31 # _model_server_result.job_id 967yGag95naBp_b-Uj_0-g _model_server_result.datetime_utc '2024-11-05 04:50:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3v31 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":403}' # _entry.id 3V31 # _exptl.entry_id 3V31 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.01 _cell.angle_gamma 90 _cell.entry_id 3V31 _cell.length_a 29.663 _cell.length_b 52.822 _cell.length_c 51.556 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3V31 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C ACE 1 B ACE 0 1_555 B N LEU 2 B LEU 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? metalc ? metalc1 A O CYS 91 A CYS 237 1_555 D NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc2 A O LEU 159 A LEU 305 1_555 E NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? metalc ? metalc3 A O LEU 162 A LEU 308 1_555 E NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc4 A O ILE 165 A ILE 311 1_555 E NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc5 D NA NA . A NA 402 1_555 F O HOH . A HOH 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc6 D NA NA . A NA 402 1_555 F O HOH . A HOH 570 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc7 D NA NA . A NA 402 1_555 F O HOH . A HOH 594 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3V31 _atom_sites.fract_transf_matrix[1][1] 0.033712 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004745 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018932 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019588 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CL A 1 401 500 CL CL . D 4 NA A 1 402 510 NA NA . E 4 NA A 1 403 511 NA NA . F 5 HOH A 1 501 1 HOH HOH . F 5 HOH A 2 502 2 HOH HOH . F 5 HOH A 3 503 3 HOH HOH . F 5 HOH A 4 504 4 HOH HOH . F 5 HOH A 5 505 5 HOH HOH . F 5 HOH A 6 506 6 HOH HOH . F 5 HOH A 7 507 7 HOH HOH . F 5 HOH A 8 508 8 HOH HOH . F 5 HOH A 9 509 9 HOH HOH . F 5 HOH A 10 510 10 HOH HOH . F 5 HOH A 11 511 11 HOH HOH . F 5 HOH A 12 512 12 HOH HOH . F 5 HOH A 13 513 13 HOH HOH . F 5 HOH A 14 514 14 HOH HOH . F 5 HOH A 15 515 15 HOH HOH . F 5 HOH A 16 516 16 HOH HOH . F 5 HOH A 17 517 17 HOH HOH . F 5 HOH A 18 518 18 HOH HOH . F 5 HOH A 19 519 19 HOH HOH . F 5 HOH A 20 520 20 HOH HOH . F 5 HOH A 21 521 21 HOH HOH . F 5 HOH A 22 522 22 HOH HOH . F 5 HOH A 23 523 23 HOH HOH . F 5 HOH A 24 524 24 HOH HOH . F 5 HOH A 25 525 25 HOH HOH . F 5 HOH A 26 526 26 HOH HOH . F 5 HOH A 27 527 27 HOH HOH . F 5 HOH A 28 528 28 HOH HOH . F 5 HOH A 29 529 30 HOH HOH . F 5 HOH A 30 530 31 HOH HOH . F 5 HOH A 31 531 32 HOH HOH . F 5 HOH A 32 532 33 HOH HOH . F 5 HOH A 33 533 34 HOH HOH . F 5 HOH A 34 534 35 HOH HOH . F 5 HOH A 35 535 36 HOH HOH . F 5 HOH A 36 536 37 HOH HOH . F 5 HOH A 37 537 38 HOH HOH . F 5 HOH A 38 538 39 HOH HOH . F 5 HOH A 39 539 40 HOH HOH . F 5 HOH A 40 540 41 HOH HOH . F 5 HOH A 41 541 42 HOH HOH . F 5 HOH A 42 542 43 HOH HOH . F 5 HOH A 43 543 45 HOH HOH . F 5 HOH A 44 544 46 HOH HOH . F 5 HOH A 45 545 47 HOH HOH . F 5 HOH A 46 546 48 HOH HOH . F 5 HOH A 47 547 50 HOH HOH . F 5 HOH A 48 548 51 HOH HOH . F 5 HOH A 49 549 52 HOH HOH . F 5 HOH A 50 550 53 HOH HOH . F 5 HOH A 51 551 54 HOH HOH . F 5 HOH A 52 552 55 HOH HOH . F 5 HOH A 53 553 56 HOH HOH . F 5 HOH A 54 554 57 HOH HOH . F 5 HOH A 55 555 58 HOH HOH . F 5 HOH A 56 556 59 HOH HOH . F 5 HOH A 57 557 60 HOH HOH . F 5 HOH A 58 558 61 HOH HOH . F 5 HOH A 59 559 62 HOH HOH . F 5 HOH A 60 560 63 HOH HOH . F 5 HOH A 61 561 64 HOH HOH . F 5 HOH A 62 562 65 HOH HOH . F 5 HOH A 63 563 66 HOH HOH . F 5 HOH A 64 564 67 HOH HOH . F 5 HOH A 65 565 68 HOH HOH . F 5 HOH A 66 566 69 HOH HOH . F 5 HOH A 67 567 70 HOH HOH . F 5 HOH A 68 568 71 HOH HOH . F 5 HOH A 69 569 72 HOH HOH . F 5 HOH A 70 570 73 HOH HOH . F 5 HOH A 71 571 74 HOH HOH . F 5 HOH A 72 572 75 HOH HOH . F 5 HOH A 73 573 76 HOH HOH . F 5 HOH A 74 574 77 HOH HOH . F 5 HOH A 75 575 78 HOH HOH . F 5 HOH A 76 576 79 HOH HOH . F 5 HOH A 77 577 80 HOH HOH . F 5 HOH A 78 578 81 HOH HOH . F 5 HOH A 79 579 82 HOH HOH . F 5 HOH A 80 580 83 HOH HOH . F 5 HOH A 81 581 84 HOH HOH . F 5 HOH A 82 582 85 HOH HOH . F 5 HOH A 83 583 86 HOH HOH . F 5 HOH A 84 584 88 HOH HOH . F 5 HOH A 85 585 89 HOH HOH . F 5 HOH A 86 586 90 HOH HOH . F 5 HOH A 87 587 91 HOH HOH . F 5 HOH A 88 588 92 HOH HOH . F 5 HOH A 89 589 93 HOH HOH . F 5 HOH A 90 590 94 HOH HOH . F 5 HOH A 91 591 95 HOH HOH . F 5 HOH A 92 592 97 HOH HOH . F 5 HOH A 93 593 98 HOH HOH . F 5 HOH A 94 594 101 HOH HOH . F 5 HOH A 95 595 102 HOH HOH . F 5 HOH A 96 596 103 HOH HOH . F 5 HOH A 97 597 104 HOH HOH . F 5 HOH A 98 598 105 HOH HOH . F 5 HOH A 99 599 107 HOH HOH . F 5 HOH A 100 600 109 HOH HOH . F 5 HOH A 101 601 110 HOH HOH . F 5 HOH A 102 602 111 HOH HOH . F 5 HOH A 103 603 112 HOH HOH . F 5 HOH A 104 604 113 HOH HOH . F 5 HOH A 105 605 114 HOH HOH . F 5 HOH A 106 606 115 HOH HOH . F 5 HOH A 107 607 116 HOH HOH . F 5 HOH A 108 608 117 HOH HOH . F 5 HOH A 109 609 118 HOH HOH . F 5 HOH A 110 610 119 HOH HOH . F 5 HOH A 111 611 120 HOH HOH . F 5 HOH A 112 612 121 HOH HOH . F 5 HOH A 113 613 122 HOH HOH . F 5 HOH A 114 614 123 HOH HOH . F 5 HOH A 115 615 124 HOH HOH . F 5 HOH A 116 616 125 HOH HOH . F 5 HOH A 117 617 126 HOH HOH . F 5 HOH A 118 618 127 HOH HOH . F 5 HOH A 119 619 128 HOH HOH . F 5 HOH A 120 620 129 HOH HOH . F 5 HOH A 121 621 130 HOH HOH . F 5 HOH A 122 622 131 HOH HOH . F 5 HOH A 123 623 132 HOH HOH . F 5 HOH A 124 624 133 HOH HOH . F 5 HOH A 125 625 135 HOH HOH . F 5 HOH A 126 626 136 HOH HOH . F 5 HOH A 127 627 137 HOH HOH . F 5 HOH A 128 628 138 HOH HOH . F 5 HOH A 129 629 139 HOH HOH . G 5 HOH B 1 101 29 HOH HOH . G 5 HOH B 2 102 44 HOH HOH . G 5 HOH B 3 103 49 HOH HOH . G 5 HOH B 4 104 87 HOH HOH . G 5 HOH B 5 105 96 HOH HOH . G 5 HOH B 6 106 99 HOH HOH . G 5 HOH B 7 107 100 HOH HOH . G 5 HOH B 8 108 106 HOH HOH . G 5 HOH B 9 109 108 HOH HOH . G 5 HOH B 10 110 134 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 4 _atom_site.Cartn_x 14.143 _atom_site.Cartn_y 4.498 _atom_site.Cartn_z -9.172 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 17.23 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 403 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #