data_3V35 # _model_server_result.job_id dNa9P2MYHs64empSw8pGeQ _model_server_result.datetime_utc '2024-11-30 13:50:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3v35 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":334}' # _entry.id 3V35 # _exptl.entry_id 3V35 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 73.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DIMETHYLFORMAMIDE _entity.pdbx_number_of_molecules 23 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.75 _cell.angle_gamma 90 _cell.entry_id 3V35 _cell.length_a 46.927 _cell.length_b 68.158 _cell.length_c 48.934 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3V35 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N ? 4 N N N ? 4 O N N ? 4 P N N ? 4 Q N N ? 4 R N N ? 4 S N N ? 4 T N N ? 4 U N N ? 4 V N N ? 4 W N N ? 4 X N N ? 4 Y N N ? 4 Z N N # _chem_comp.formula 'C3 H7 N O' _chem_comp.formula_weight 73.094 _chem_comp.id DMF _chem_comp.mon_nstd_flag . _chem_comp.name DIMETHYLFORMAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N DMF sing 83 n n C1 H11 DMF sing 84 n n C1 H12 DMF sing 85 n n C1 H13 DMF sing 86 n n C2 N DMF sing 87 n n C2 H21 DMF sing 88 n n C2 H22 DMF sing 89 n n C2 H23 DMF sing 90 n n C O DMF doub 91 n n C N DMF sing 92 n n C HC DMF sing 93 n n # _atom_sites.entry_id 3V35 _atom_sites.fract_transf_matrix[1][1] 0.02131 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001396 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014672 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02048 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 316 316 NAP NAP . C 3 NTI A 1 317 317 NTI NTZ . D 4 DMF A 1 318 318 DMF DMF . E 4 DMF A 1 319 319 DMF DMF . F 4 DMF A 1 320 320 DMF DMF . G 4 DMF A 1 321 321 DMF DMF . H 4 DMF A 1 322 322 DMF DMF . I 4 DMF A 1 323 323 DMF DMF . J 4 DMF A 1 324 324 DMF DMF . K 4 DMF A 1 325 325 DMF DMF . L 4 DMF A 1 326 326 DMF DMF . M 4 DMF A 1 327 327 DMF DMF . N 4 DMF A 1 328 328 DMF DMF . O 4 DMF A 1 329 329 DMF DMF . P 4 DMF A 1 330 330 DMF DMF . Q 4 DMF A 1 331 331 DMF DMF . R 4 DMF A 1 332 332 DMF DMF . S 4 DMF A 1 333 333 DMF DMF . T 4 DMF A 1 334 334 DMF DMF . U 4 DMF A 1 335 335 DMF DMF . V 4 DMF A 1 336 336 DMF DMF . W 4 DMF A 1 337 337 DMF DMF . X 4 DMF A 1 338 338 DMF DMF . Y 4 DMF A 1 339 339 DMF DMF . Z 4 DMF A 1 340 340 DMF DMF . AA 5 HOH A 1 341 1 HOH HOH . AA 5 HOH A 2 342 2 HOH HOH . AA 5 HOH A 3 343 3 HOH HOH . AA 5 HOH A 4 344 4 HOH HOH . AA 5 HOH A 5 345 5 HOH HOH . AA 5 HOH A 6 346 6 HOH HOH . AA 5 HOH A 7 347 7 HOH HOH . AA 5 HOH A 8 348 8 HOH HOH . AA 5 HOH A 9 349 9 HOH HOH . AA 5 HOH A 10 350 10 HOH HOH . AA 5 HOH A 11 351 11 HOH HOH . AA 5 HOH A 12 352 12 HOH HOH . AA 5 HOH A 13 353 13 HOH HOH . AA 5 HOH A 14 354 14 HOH HOH . AA 5 HOH A 15 355 15 HOH HOH . AA 5 HOH A 16 356 16 HOH HOH . AA 5 HOH A 17 357 17 HOH HOH . AA 5 HOH A 18 358 18 HOH HOH . AA 5 HOH A 19 359 19 HOH HOH . AA 5 HOH A 20 360 20 HOH HOH . AA 5 HOH A 21 361 21 HOH HOH . AA 5 HOH A 22 362 22 HOH HOH . AA 5 HOH A 23 363 23 HOH HOH . AA 5 HOH A 24 364 24 HOH HOH . AA 5 HOH A 25 365 25 HOH HOH . AA 5 HOH A 26 366 26 HOH HOH . AA 5 HOH A 27 367 27 HOH HOH . AA 5 HOH A 28 368 28 HOH HOH . AA 5 HOH A 29 369 29 HOH HOH . AA 5 HOH A 30 370 30 HOH HOH . AA 5 HOH A 31 371 31 HOH HOH . AA 5 HOH A 32 372 32 HOH HOH . AA 5 HOH A 33 373 33 HOH HOH . AA 5 HOH A 34 374 34 HOH HOH . AA 5 HOH A 35 375 35 HOH HOH . AA 5 HOH A 36 376 36 HOH HOH . AA 5 HOH A 37 377 37 HOH HOH . AA 5 HOH A 38 378 38 HOH HOH . AA 5 HOH A 39 379 39 HOH HOH . AA 5 HOH A 40 380 40 HOH HOH . AA 5 HOH A 41 381 41 HOH HOH . AA 5 HOH A 42 382 42 HOH HOH . AA 5 HOH A 43 383 43 HOH HOH . AA 5 HOH A 44 384 44 HOH HOH . AA 5 HOH A 45 385 45 HOH HOH . AA 5 HOH A 46 386 46 HOH HOH . AA 5 HOH A 47 387 47 HOH HOH . AA 5 HOH A 48 388 48 HOH HOH . AA 5 HOH A 49 389 49 HOH HOH . AA 5 HOH A 50 390 50 HOH HOH . AA 5 HOH A 51 391 51 HOH HOH . AA 5 HOH A 52 392 52 HOH HOH . AA 5 HOH A 53 393 53 HOH HOH . AA 5 HOH A 54 394 54 HOH HOH . AA 5 HOH A 55 395 55 HOH HOH . AA 5 HOH A 56 396 56 HOH HOH . AA 5 HOH A 57 397 57 HOH HOH . AA 5 HOH A 58 398 58 HOH HOH . AA 5 HOH A 59 399 59 HOH HOH . AA 5 HOH A 60 400 60 HOH HOH . AA 5 HOH A 61 401 61 HOH HOH . AA 5 HOH A 62 402 62 HOH HOH . AA 5 HOH A 63 403 64 HOH HOH . AA 5 HOH A 64 404 65 HOH HOH . AA 5 HOH A 65 405 66 HOH HOH . AA 5 HOH A 66 406 67 HOH HOH . AA 5 HOH A 67 407 68 HOH HOH . AA 5 HOH A 68 408 69 HOH HOH . AA 5 HOH A 69 409 70 HOH HOH . AA 5 HOH A 70 410 71 HOH HOH . AA 5 HOH A 71 411 72 HOH HOH . AA 5 HOH A 72 412 73 HOH HOH . AA 5 HOH A 73 413 74 HOH HOH . AA 5 HOH A 74 414 75 HOH HOH . AA 5 HOH A 75 415 76 HOH HOH . AA 5 HOH A 76 416 77 HOH HOH . AA 5 HOH A 77 417 78 HOH HOH . AA 5 HOH A 78 418 79 HOH HOH . AA 5 HOH A 79 419 80 HOH HOH . AA 5 HOH A 80 420 81 HOH HOH . AA 5 HOH A 81 421 82 HOH HOH . AA 5 HOH A 82 422 83 HOH HOH . AA 5 HOH A 83 423 84 HOH HOH . AA 5 HOH A 84 424 85 HOH HOH . AA 5 HOH A 85 425 86 HOH HOH . AA 5 HOH A 86 426 87 HOH HOH . AA 5 HOH A 87 427 88 HOH HOH . AA 5 HOH A 88 428 89 HOH HOH . AA 5 HOH A 89 429 90 HOH HOH . AA 5 HOH A 90 430 91 HOH HOH . AA 5 HOH A 91 431 92 HOH HOH . AA 5 HOH A 92 432 93 HOH HOH . AA 5 HOH A 93 433 94 HOH HOH . AA 5 HOH A 94 434 95 HOH HOH . AA 5 HOH A 95 435 96 HOH HOH . AA 5 HOH A 96 436 97 HOH HOH . AA 5 HOH A 97 437 98 HOH HOH . AA 5 HOH A 98 438 99 HOH HOH . AA 5 HOH A 99 439 100 HOH HOH . AA 5 HOH A 100 440 101 HOH HOH . AA 5 HOH A 101 441 102 HOH HOH . AA 5 HOH A 102 442 103 HOH HOH . AA 5 HOH A 103 443 104 HOH HOH . AA 5 HOH A 104 444 105 HOH HOH . AA 5 HOH A 105 445 106 HOH HOH . AA 5 HOH A 106 446 107 HOH HOH . AA 5 HOH A 107 447 108 HOH HOH . AA 5 HOH A 108 448 109 HOH HOH . AA 5 HOH A 109 449 110 HOH HOH . AA 5 HOH A 110 450 111 HOH HOH . AA 5 HOH A 111 451 112 HOH HOH . AA 5 HOH A 112 452 114 HOH HOH . AA 5 HOH A 113 453 115 HOH HOH . AA 5 HOH A 114 454 116 HOH HOH . AA 5 HOH A 115 455 117 HOH HOH . AA 5 HOH A 116 456 118 HOH HOH . AA 5 HOH A 117 457 119 HOH HOH . AA 5 HOH A 118 458 121 HOH HOH . AA 5 HOH A 119 459 122 HOH HOH . AA 5 HOH A 120 460 123 HOH HOH . AA 5 HOH A 121 461 124 HOH HOH . AA 5 HOH A 122 462 125 HOH HOH . AA 5 HOH A 123 463 126 HOH HOH . AA 5 HOH A 124 464 127 HOH HOH . AA 5 HOH A 125 465 128 HOH HOH . AA 5 HOH A 126 466 129 HOH HOH . AA 5 HOH A 127 467 130 HOH HOH . AA 5 HOH A 128 468 131 HOH HOH . AA 5 HOH A 129 469 132 HOH HOH . AA 5 HOH A 130 470 133 HOH HOH . AA 5 HOH A 131 471 134 HOH HOH . AA 5 HOH A 132 472 135 HOH HOH . AA 5 HOH A 133 473 136 HOH HOH . AA 5 HOH A 134 474 137 HOH HOH . AA 5 HOH A 135 475 138 HOH HOH . AA 5 HOH A 136 476 139 HOH HOH . AA 5 HOH A 137 477 140 HOH HOH . AA 5 HOH A 138 478 141 HOH HOH . AA 5 HOH A 139 479 142 HOH HOH . AA 5 HOH A 140 480 143 HOH HOH . AA 5 HOH A 141 481 144 HOH HOH . AA 5 HOH A 142 482 145 HOH HOH . AA 5 HOH A 143 483 147 HOH HOH . AA 5 HOH A 144 484 148 HOH HOH . AA 5 HOH A 145 485 149 HOH HOH . AA 5 HOH A 146 486 150 HOH HOH . AA 5 HOH A 147 487 151 HOH HOH . AA 5 HOH A 148 488 152 HOH HOH . AA 5 HOH A 149 489 153 HOH HOH . AA 5 HOH A 150 490 154 HOH HOH . AA 5 HOH A 151 491 155 HOH HOH . AA 5 HOH A 152 492 156 HOH HOH . AA 5 HOH A 153 493 157 HOH HOH . AA 5 HOH A 154 494 158 HOH HOH . AA 5 HOH A 155 495 159 HOH HOH . AA 5 HOH A 156 496 160 HOH HOH . AA 5 HOH A 157 497 161 HOH HOH . AA 5 HOH A 158 498 162 HOH HOH . AA 5 HOH A 159 499 163 HOH HOH . AA 5 HOH A 160 500 164 HOH HOH . AA 5 HOH A 161 501 165 HOH HOH . AA 5 HOH A 162 502 166 HOH HOH . AA 5 HOH A 163 503 167 HOH HOH . AA 5 HOH A 164 504 168 HOH HOH . AA 5 HOH A 165 505 169 HOH HOH . AA 5 HOH A 166 506 170 HOH HOH . AA 5 HOH A 167 507 171 HOH HOH . AA 5 HOH A 168 508 172 HOH HOH . AA 5 HOH A 169 509 173 HOH HOH . AA 5 HOH A 170 510 174 HOH HOH . AA 5 HOH A 171 511 175 HOH HOH . AA 5 HOH A 172 512 176 HOH HOH . AA 5 HOH A 173 513 177 HOH HOH . AA 5 HOH A 174 514 178 HOH HOH . AA 5 HOH A 175 515 179 HOH HOH . AA 5 HOH A 176 516 180 HOH HOH . AA 5 HOH A 177 517 181 HOH HOH . AA 5 HOH A 178 518 182 HOH HOH . AA 5 HOH A 179 519 183 HOH HOH . AA 5 HOH A 180 520 184 HOH HOH . AA 5 HOH A 181 521 185 HOH HOH . AA 5 HOH A 182 522 186 HOH HOH . AA 5 HOH A 183 523 188 HOH HOH . AA 5 HOH A 184 524 189 HOH HOH . AA 5 HOH A 185 525 190 HOH HOH . AA 5 HOH A 186 526 191 HOH HOH . AA 5 HOH A 187 527 192 HOH HOH . AA 5 HOH A 188 528 193 HOH HOH . AA 5 HOH A 189 529 194 HOH HOH . AA 5 HOH A 190 530 195 HOH HOH . AA 5 HOH A 191 531 196 HOH HOH . AA 5 HOH A 192 532 199 HOH HOH . AA 5 HOH A 193 533 200 HOH HOH . AA 5 HOH A 194 534 201 HOH HOH . AA 5 HOH A 195 535 202 HOH HOH . AA 5 HOH A 196 536 203 HOH HOH . AA 5 HOH A 197 537 204 HOH HOH . AA 5 HOH A 198 538 205 HOH HOH . AA 5 HOH A 199 539 206 HOH HOH . AA 5 HOH A 200 540 207 HOH HOH . AA 5 HOH A 201 541 208 HOH HOH . AA 5 HOH A 202 542 209 HOH HOH . AA 5 HOH A 203 543 210 HOH HOH . AA 5 HOH A 204 544 211 HOH HOH . AA 5 HOH A 205 545 212 HOH HOH . AA 5 HOH A 206 546 213 HOH HOH . AA 5 HOH A 207 547 214 HOH HOH . AA 5 HOH A 208 548 215 HOH HOH . AA 5 HOH A 209 549 216 HOH HOH . AA 5 HOH A 210 550 217 HOH HOH . AA 5 HOH A 211 551 218 HOH HOH . AA 5 HOH A 212 552 219 HOH HOH . AA 5 HOH A 213 553 220 HOH HOH . AA 5 HOH A 214 554 221 HOH HOH . AA 5 HOH A 215 555 222 HOH HOH . AA 5 HOH A 216 556 223 HOH HOH . AA 5 HOH A 217 557 224 HOH HOH . AA 5 HOH A 218 558 225 HOH HOH . AA 5 HOH A 219 559 226 HOH HOH . AA 5 HOH A 220 560 227 HOH HOH . AA 5 HOH A 221 561 228 HOH HOH . AA 5 HOH A 222 562 230 HOH HOH . AA 5 HOH A 223 563 231 HOH HOH . AA 5 HOH A 224 564 232 HOH HOH . AA 5 HOH A 225 565 233 HOH HOH . AA 5 HOH A 226 566 234 HOH HOH . AA 5 HOH A 227 567 235 HOH HOH . AA 5 HOH A 228 568 236 HOH HOH . AA 5 HOH A 229 569 237 HOH HOH . AA 5 HOH A 230 570 238 HOH HOH . AA 5 HOH A 231 571 239 HOH HOH . AA 5 HOH A 232 572 240 HOH HOH . AA 5 HOH A 233 573 242 HOH HOH . AA 5 HOH A 234 574 245 HOH HOH . AA 5 HOH A 235 575 246 HOH HOH . AA 5 HOH A 236 576 247 HOH HOH . AA 5 HOH A 237 577 248 HOH HOH . AA 5 HOH A 238 578 249 HOH HOH . AA 5 HOH A 239 579 251 HOH HOH . AA 5 HOH A 240 580 254 HOH HOH . AA 5 HOH A 241 581 255 HOH HOH . AA 5 HOH A 242 582 256 HOH HOH . AA 5 HOH A 243 583 257 HOH HOH . AA 5 HOH A 244 584 258 HOH HOH . AA 5 HOH A 245 585 259 HOH HOH . AA 5 HOH A 246 586 261 HOH HOH . AA 5 HOH A 247 587 262 HOH HOH . AA 5 HOH A 248 588 263 HOH HOH . AA 5 HOH A 249 589 264 HOH HOH . AA 5 HOH A 250 590 265 HOH HOH . AA 5 HOH A 251 591 267 HOH HOH . AA 5 HOH A 252 592 268 HOH HOH . AA 5 HOH A 253 593 269 HOH HOH . AA 5 HOH A 254 594 270 HOH HOH . AA 5 HOH A 255 595 271 HOH HOH . AA 5 HOH A 256 596 273 HOH HOH . AA 5 HOH A 257 597 277 HOH HOH . AA 5 HOH A 258 598 278 HOH HOH . AA 5 HOH A 259 599 279 HOH HOH . AA 5 HOH A 260 600 280 HOH HOH . AA 5 HOH A 261 601 281 HOH HOH . AA 5 HOH A 262 602 282 HOH HOH . AA 5 HOH A 263 603 283 HOH HOH . AA 5 HOH A 264 604 284 HOH HOH . AA 5 HOH A 265 605 285 HOH HOH . AA 5 HOH A 266 606 286 HOH HOH . AA 5 HOH A 267 607 288 HOH HOH . AA 5 HOH A 268 608 289 HOH HOH . AA 5 HOH A 269 609 290 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DMF . . . T 4 -4.879 -16.551 1.059 1 29.71 ? C1 DMF 334 A 1 HETATM 2 C C2 DMF . . . T 4 -5.666 -18.835 0.47 1 28.27 ? C2 DMF 334 A 1 HETATM 3 C C DMF . . . T 4 -3.446 -18.509 1.498 1 29.65 ? C DMF 334 A 1 HETATM 4 O O DMF . . . T 4 -2.46 -18.809 0.837 1 30.86 ? O DMF 334 A 1 HETATM 5 N N DMF . . . T 4 -4.629 -17.977 1.024 1 28.03 ? N DMF 334 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 5 #