data_3V3C
#
_model_server_result.job_id            mP2d2x82txbkAiDedqFDTA 
_model_server_result.datetime_utc      '2024-11-21 14:02:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3v3c 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Z","auth_seq_id":106}' 
#
_entry.id    3V3C 
#
_exptl.entry_id    3V3C 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              88.906 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'YTTRIUM (III) ION' 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          101.22 
_cell.angle_gamma         90 
_cell.entry_id            3V3C 
_cell.length_a            139.13 
_cell.length_b            102.38 
_cell.length_c            122.43 
_cell.Z_PDB               56 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3V3C 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetradecameric 
_pdbx_struct_assembly.oligomeric_count      14 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 P N N 
? 3 T N N 
? 3 U N N 
? 3 W N N 
? 3 Z N N 
? 3 BA N N 
? 3 DA N N 
? 3 HA N N 
? 3 JA N N 
? 3 MA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C O VAL 79 C VAL 81 1_555 T Y YT3 . C YT3 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.097 ? 
metalc ? metalc2 D O VAL 79 D VAL 81 1_555 U Y YT3 . D YT3 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.156 ? 
metalc ? metalc3 H OE1 GLU 35 H GLU 37 1_555 EA NA NA . H NA 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? 
metalc ? metalc4 H OE2 GLU 35 H GLU 37 1_555 EA NA NA . H NA 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.992 ? 
metalc ? metalc5 H OE2 GLU 42 H GLU 44 1_555 DA Y YT3 . H YT3 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.04 ? 
metalc ? metalc6 K NE2 GLN 40 K GLN 42 1_555 HA Y YT3 . K YT3 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.169 ? 
metalc ? metalc7 M OE1 GLU 35 M GLU 37 1_555 LA NA NA . M NA 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.649 ? 
metalc ? metalc8 M OE2 GLU 35 M GLU 37 1_555 LA NA NA . M NA 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.115 ? 
metalc ? metalc9 LA NA NA . M NA 127 1_555 N OE2 GLU 35 N GLU 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.112 ? 
#
_chem_comp.formula           'Y 3' 
_chem_comp.formula_weight    88.906 
_chem_comp.id                YT3 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'YTTRIUM (III) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3V3C 
_atom_sites.fract_transf_matrix[1][1]    0.007188 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001426 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009768 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008327 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
O 2 DGD A 1 82 4 DGD DGD . 
P 3 YT3 A 1 103 103 YT3 YT3 . 
Q 4 NA A 1 114 114 NA NA . 
R 4 NA A 1 115 115 NA NA . 
S 4 NA B 1 126 126 NA NA . 
T 3 YT3 C 1 112 112 YT3 YT3 . 
U 3 YT3 D 1 113 113 YT3 YT3 . 
V 4 NA D 1 125 125 NA NA . 
W 3 YT3 E 1 105 105 YT3 YT3 . 
X 4 NA E 1 123 123 NA NA . 
Y 4 NA E 1 124 124 NA NA . 
Z 3 YT3 F 1 106 106 YT3 YT3 . 
AA 4 NA F 1 122 122 NA NA . 
BA 3 YT3 G 1 107 107 YT3 YT3 . 
CA 4 NA G 1 121 121 NA NA . 
DA 3 YT3 H 1 108 108 YT3 YT3 . 
EA 4 NA H 1 120 120 NA NA . 
FA 4 NA I 1 119 119 NA NA . 
GA 4 NA J 1 118 118 NA NA . 
HA 3 YT3 K 1 111 111 YT3 YT3 . 
IA 4 NA K 1 117 117 NA NA . 
JA 3 YT3 L 1 110 110 YT3 YT3 . 
KA 4 NA L 1 116 116 NA NA . 
LA 4 NA M 1 127 127 NA NA . 
MA 3 YT3 N 1 104 104 YT3 YT3 . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           Y 
_atom_site.label_atom_id         Y 
_atom_site.label_comp_id         YT3 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         Z 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -19.247 
_atom_site.Cartn_y               -40.926 
_atom_site.Cartn_z               64.793 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        180.36 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          Y 
_atom_site.auth_comp_id          YT3 
_atom_site.auth_seq_id           106 
_atom_site.auth_asym_id          F 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           259 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#