data_3V3D # _model_server_result.job_id ElzK8X2vAPYX-qiCiAJxcw _model_server_result.datetime_utc '2025-04-18 07:57:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3v3d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":239}' # _entry.id 3V3D # _exptl.entry_id 3V3D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3V3D _cell.length_a 59.858 _cell.length_b 59.858 _cell.length_c 165.54 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3V3D _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PHE 85 A PHE 64 1_555 A N1 CR2 86 A CR2 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 A C3 CR2 86 A CR2 66 1_555 A N LEU 87 A LEU 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 324 n n S O2 SO4 doub 325 n n S O3 SO4 sing 326 n n S O4 SO4 sing 327 n n # _atom_sites.entry_id 3V3D _atom_sites.fract_transf_matrix[1][1] 0.016706 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016706 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006041 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 239 1 SO4 SO4 . C 3 HOH A 1 65 65 HOH HOH . C 3 HOH A 2 67 67 HOH HOH . C 3 HOH A 3 240 1 HOH HOH . C 3 HOH A 4 241 2 HOH HOH . C 3 HOH A 5 242 3 HOH HOH . C 3 HOH A 6 243 4 HOH HOH . C 3 HOH A 7 244 5 HOH HOH . C 3 HOH A 8 245 6 HOH HOH . C 3 HOH A 9 246 7 HOH HOH . C 3 HOH A 10 247 8 HOH HOH . C 3 HOH A 11 248 9 HOH HOH . C 3 HOH A 12 249 10 HOH HOH . C 3 HOH A 13 250 11 HOH HOH . C 3 HOH A 14 251 12 HOH HOH . C 3 HOH A 15 252 13 HOH HOH . C 3 HOH A 16 253 14 HOH HOH . C 3 HOH A 17 254 15 HOH HOH . C 3 HOH A 18 255 16 HOH HOH . C 3 HOH A 19 256 17 HOH HOH . C 3 HOH A 20 257 18 HOH HOH . C 3 HOH A 21 258 19 HOH HOH . C 3 HOH A 22 259 20 HOH HOH . C 3 HOH A 23 260 21 HOH HOH . C 3 HOH A 24 261 22 HOH HOH . C 3 HOH A 25 262 23 HOH HOH . C 3 HOH A 26 263 24 HOH HOH . C 3 HOH A 27 264 25 HOH HOH . C 3 HOH A 28 265 26 HOH HOH . C 3 HOH A 29 266 27 HOH HOH . C 3 HOH A 30 267 28 HOH HOH . C 3 HOH A 31 268 29 HOH HOH . C 3 HOH A 32 269 30 HOH HOH . C 3 HOH A 33 270 31 HOH HOH . C 3 HOH A 34 271 32 HOH HOH . C 3 HOH A 35 272 33 HOH HOH . C 3 HOH A 36 273 34 HOH HOH . C 3 HOH A 37 274 35 HOH HOH . C 3 HOH A 38 275 36 HOH HOH . C 3 HOH A 39 276 37 HOH HOH . C 3 HOH A 40 277 38 HOH HOH . C 3 HOH A 41 278 39 HOH HOH . C 3 HOH A 42 279 40 HOH HOH . C 3 HOH A 43 280 41 HOH HOH . C 3 HOH A 44 281 42 HOH HOH . C 3 HOH A 45 282 43 HOH HOH . C 3 HOH A 46 283 44 HOH HOH . C 3 HOH A 47 284 45 HOH HOH . C 3 HOH A 48 285 46 HOH HOH . C 3 HOH A 49 286 47 HOH HOH . C 3 HOH A 50 287 48 HOH HOH . C 3 HOH A 51 288 49 HOH HOH . C 3 HOH A 52 289 50 HOH HOH . C 3 HOH A 53 290 51 HOH HOH . C 3 HOH A 54 291 52 HOH HOH . C 3 HOH A 55 292 53 HOH HOH . C 3 HOH A 56 293 54 HOH HOH . C 3 HOH A 57 294 55 HOH HOH . C 3 HOH A 58 295 56 HOH HOH . C 3 HOH A 59 296 57 HOH HOH . C 3 HOH A 60 297 58 HOH HOH . C 3 HOH A 61 298 59 HOH HOH . C 3 HOH A 62 299 60 HOH HOH . C 3 HOH A 63 300 61 HOH HOH . C 3 HOH A 64 301 62 HOH HOH . C 3 HOH A 65 302 63 HOH HOH . C 3 HOH A 66 303 64 HOH HOH . C 3 HOH A 67 304 66 HOH HOH . C 3 HOH A 68 305 68 HOH HOH . C 3 HOH A 69 306 69 HOH HOH . C 3 HOH A 70 307 70 HOH HOH . C 3 HOH A 71 308 71 HOH HOH . C 3 HOH A 72 309 72 HOH HOH . C 3 HOH A 73 310 73 HOH HOH . C 3 HOH A 74 311 74 HOH HOH . C 3 HOH A 75 312 75 HOH HOH . C 3 HOH A 76 313 76 HOH HOH . C 3 HOH A 77 314 77 HOH HOH . C 3 HOH A 78 315 78 HOH HOH . C 3 HOH A 79 316 79 HOH HOH . C 3 HOH A 80 317 80 HOH HOH . C 3 HOH A 81 318 81 HOH HOH . C 3 HOH A 82 319 82 HOH HOH . C 3 HOH A 83 320 83 HOH HOH . C 3 HOH A 84 321 84 HOH HOH . C 3 HOH A 85 322 85 HOH HOH . C 3 HOH A 86 323 86 HOH HOH . C 3 HOH A 87 324 87 HOH HOH . C 3 HOH A 88 325 88 HOH HOH . C 3 HOH A 89 326 89 HOH HOH . C 3 HOH A 90 327 90 HOH HOH . C 3 HOH A 91 328 91 HOH HOH . C 3 HOH A 92 329 92 HOH HOH . C 3 HOH A 93 330 93 HOH HOH . C 3 HOH A 94 331 94 HOH HOH . C 3 HOH A 95 332 95 HOH HOH . C 3 HOH A 96 333 96 HOH HOH . C 3 HOH A 97 334 97 HOH HOH . C 3 HOH A 98 335 98 HOH HOH . C 3 HOH A 99 336 99 HOH HOH . C 3 HOH A 100 337 100 HOH HOH . C 3 HOH A 101 338 101 HOH HOH . C 3 HOH A 102 339 102 HOH HOH . C 3 HOH A 103 340 103 HOH HOH . C 3 HOH A 104 341 104 HOH HOH . C 3 HOH A 105 342 105 HOH HOH . C 3 HOH A 106 343 106 HOH HOH . C 3 HOH A 107 344 107 HOH HOH . C 3 HOH A 108 345 108 HOH HOH . C 3 HOH A 109 346 109 HOH HOH . C 3 HOH A 110 347 110 HOH HOH . C 3 HOH A 111 348 111 HOH HOH . C 3 HOH A 112 349 112 HOH HOH . C 3 HOH A 113 350 113 HOH HOH . C 3 HOH A 114 351 114 HOH HOH . C 3 HOH A 115 352 115 HOH HOH . C 3 HOH A 116 353 116 HOH HOH . C 3 HOH A 117 354 117 HOH HOH . C 3 HOH A 118 355 118 HOH HOH . C 3 HOH A 119 356 119 HOH HOH . C 3 HOH A 120 357 120 HOH HOH . C 3 HOH A 121 358 121 HOH HOH . C 3 HOH A 122 359 122 HOH HOH . C 3 HOH A 123 360 123 HOH HOH . C 3 HOH A 124 361 124 HOH HOH . C 3 HOH A 125 362 125 HOH HOH . C 3 HOH A 126 363 126 HOH HOH . C 3 HOH A 127 364 127 HOH HOH . C 3 HOH A 128 365 128 HOH HOH . C 3 HOH A 129 366 129 HOH HOH . C 3 HOH A 130 367 130 HOH HOH . C 3 HOH A 131 368 131 HOH HOH . C 3 HOH A 132 369 132 HOH HOH . C 3 HOH A 133 370 133 HOH HOH . C 3 HOH A 134 371 134 HOH HOH . C 3 HOH A 135 372 135 HOH HOH . C 3 HOH A 136 373 136 HOH HOH . C 3 HOH A 137 374 137 HOH HOH . C 3 HOH A 138 375 138 HOH HOH . C 3 HOH A 139 376 139 HOH HOH . C 3 HOH A 140 377 140 HOH HOH . C 3 HOH A 141 378 141 HOH HOH . C 3 HOH A 142 379 142 HOH HOH . C 3 HOH A 143 380 143 HOH HOH . C 3 HOH A 144 381 144 HOH HOH . C 3 HOH A 145 382 145 HOH HOH . C 3 HOH A 146 383 146 HOH HOH . C 3 HOH A 147 384 147 HOH HOH . C 3 HOH A 148 385 148 HOH HOH . C 3 HOH A 149 386 149 HOH HOH . C 3 HOH A 150 387 150 HOH HOH . C 3 HOH A 151 388 151 HOH HOH . C 3 HOH A 152 389 152 HOH HOH . C 3 HOH A 153 390 153 HOH HOH . C 3 HOH A 154 391 154 HOH HOH . C 3 HOH A 155 392 155 HOH HOH . C 3 HOH A 156 393 156 HOH HOH . C 3 HOH A 157 394 157 HOH HOH . C 3 HOH A 158 395 158 HOH HOH . C 3 HOH A 159 396 159 HOH HOH . C 3 HOH A 160 397 160 HOH HOH . C 3 HOH A 161 398 161 HOH HOH . C 3 HOH A 162 399 162 HOH HOH . C 3 HOH A 163 400 163 HOH HOH . C 3 HOH A 164 401 164 HOH HOH . C 3 HOH A 165 402 165 HOH HOH . C 3 HOH A 166 403 166 HOH HOH . C 3 HOH A 167 404 167 HOH HOH . C 3 HOH A 168 405 168 HOH HOH . C 3 HOH A 169 406 169 HOH HOH . C 3 HOH A 170 407 170 HOH HOH . C 3 HOH A 171 408 171 HOH HOH . C 3 HOH A 172 409 172 HOH HOH . C 3 HOH A 173 410 173 HOH HOH . C 3 HOH A 174 411 174 HOH HOH . C 3 HOH A 175 412 175 HOH HOH . C 3 HOH A 176 413 176 HOH HOH . C 3 HOH A 177 414 177 HOH HOH . C 3 HOH A 178 415 178 HOH HOH . C 3 HOH A 179 416 179 HOH HOH . C 3 HOH A 180 417 180 HOH HOH . C 3 HOH A 181 418 181 HOH HOH . C 3 HOH A 182 419 182 HOH HOH . C 3 HOH A 183 420 183 HOH HOH . C 3 HOH A 184 421 184 HOH HOH . C 3 HOH A 185 422 185 HOH HOH . C 3 HOH A 186 423 186 HOH HOH . C 3 HOH A 187 424 187 HOH HOH . C 3 HOH A 188 425 188 HOH HOH . C 3 HOH A 189 426 189 HOH HOH . C 3 HOH A 190 427 190 HOH HOH . C 3 HOH A 191 428 191 HOH HOH . C 3 HOH A 192 429 192 HOH HOH . C 3 HOH A 193 430 193 HOH HOH . C 3 HOH A 194 431 194 HOH HOH . C 3 HOH A 195 432 195 HOH HOH . C 3 HOH A 196 433 196 HOH HOH . C 3 HOH A 197 434 197 HOH HOH . C 3 HOH A 198 435 198 HOH HOH . C 3 HOH A 199 436 199 HOH HOH . C 3 HOH A 200 437 200 HOH HOH . C 3 HOH A 201 438 201 HOH HOH . C 3 HOH A 202 439 202 HOH HOH . C 3 HOH A 203 440 203 HOH HOH . C 3 HOH A 204 441 204 HOH HOH . C 3 HOH A 205 442 205 HOH HOH . C 3 HOH A 206 443 206 HOH HOH . C 3 HOH A 207 444 207 HOH HOH . C 3 HOH A 208 445 208 HOH HOH . C 3 HOH A 209 446 209 HOH HOH . C 3 HOH A 210 447 210 HOH HOH . C 3 HOH A 211 448 211 HOH HOH . C 3 HOH A 212 449 212 HOH HOH . C 3 HOH A 213 450 213 HOH HOH . C 3 HOH A 214 451 214 HOH HOH . C 3 HOH A 215 452 215 HOH HOH . C 3 HOH A 216 453 216 HOH HOH . C 3 HOH A 217 454 217 HOH HOH . C 3 HOH A 218 455 218 HOH HOH . C 3 HOH A 219 456 219 HOH HOH . C 3 HOH A 220 457 220 HOH HOH . C 3 HOH A 221 458 221 HOH HOH . C 3 HOH A 222 459 222 HOH HOH . C 3 HOH A 223 460 223 HOH HOH . C 3 HOH A 224 461 224 HOH HOH . C 3 HOH A 225 462 225 HOH HOH . C 3 HOH A 226 463 226 HOH HOH . C 3 HOH A 227 464 227 HOH HOH . C 3 HOH A 228 465 228 HOH HOH . C 3 HOH A 229 466 229 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . B 2 13.741 8.186 27.294 1 81.74 ? S SO4 239 A 1 HETATM 2 O O1 SO4 . . . B 2 14.714 7.916 26.242 1 81.78 ? O1 SO4 239 A 1 HETATM 3 O O2 SO4 . . . B 2 12.389 8.032 26.741 1 79.85 ? O2 SO4 239 A 1 HETATM 4 O O3 SO4 . . . B 2 13.97 7.268 28.419 1 81.17 ? O3 SO4 239 A 1 HETATM 5 O O4 SO4 . . . B 2 13.931 9.556 27.76 1 84.13 ? O4 SO4 239 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 5 #