data_3V3M # _model_server_result.job_id 0J5UcFoB3dcVNmLDvWB0HQ _model_server_result.datetime_utc '2024-11-01 10:29:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3v3m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 3V3M # _exptl.entry_id 3V3M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.03 _cell.angle_gamma 90 _cell.entry_id 3V3M _cell.length_a 106.733 _cell.length_b 82.668 _cell.length_c 53.117 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3V3M _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 148 n n S C1 DMS sing 149 n n S C2 DMS sing 150 n n C1 H11 DMS sing 151 n n C1 H12 DMS sing 152 n n C1 H13 DMS sing 153 n n C2 H21 DMS sing 154 n n C2 H22 DMS sing 155 n n C2 H23 DMS sing 156 n n # _atom_sites.entry_id 3V3M _atom_sites.fract_transf_matrix[1][1] 0.009369 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002692 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012097 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019588 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 0EN A 1 401 400 0EN 0EN . C 3 DMS A 1 402 1 DMS DMS . D 3 DMS A 1 403 2 DMS DMS . E 4 HOH A 1 501 1 HOH HOH . E 4 HOH A 2 502 2 HOH HOH . E 4 HOH A 3 503 3 HOH HOH . E 4 HOH A 4 504 4 HOH HOH . E 4 HOH A 5 505 5 HOH HOH . E 4 HOH A 6 506 6 HOH HOH . E 4 HOH A 7 507 7 HOH HOH . E 4 HOH A 8 508 8 HOH HOH . E 4 HOH A 9 509 9 HOH HOH . E 4 HOH A 10 510 10 HOH HOH . E 4 HOH A 11 511 11 HOH HOH . E 4 HOH A 12 512 14 HOH HOH . E 4 HOH A 13 513 15 HOH HOH . E 4 HOH A 14 514 16 HOH HOH . E 4 HOH A 15 515 17 HOH HOH . E 4 HOH A 16 516 18 HOH HOH . E 4 HOH A 17 517 19 HOH HOH . E 4 HOH A 18 518 22 HOH HOH . E 4 HOH A 19 519 23 HOH HOH . E 4 HOH A 20 520 24 HOH HOH . E 4 HOH A 21 521 25 HOH HOH . E 4 HOH A 22 522 26 HOH HOH . E 4 HOH A 23 523 27 HOH HOH . E 4 HOH A 24 524 28 HOH HOH . E 4 HOH A 25 525 29 HOH HOH . E 4 HOH A 26 526 30 HOH HOH . E 4 HOH A 27 527 31 HOH HOH . E 4 HOH A 28 528 32 HOH HOH . E 4 HOH A 29 529 33 HOH HOH . E 4 HOH A 30 530 35 HOH HOH . E 4 HOH A 31 531 36 HOH HOH . E 4 HOH A 32 532 38 HOH HOH . E 4 HOH A 33 533 39 HOH HOH . E 4 HOH A 34 534 40 HOH HOH . E 4 HOH A 35 535 43 HOH HOH . E 4 HOH A 36 536 44 HOH HOH . E 4 HOH A 37 537 45 HOH HOH . E 4 HOH A 38 538 46 HOH HOH . E 4 HOH A 39 539 47 HOH HOH . E 4 HOH A 40 540 48 HOH HOH . E 4 HOH A 41 541 49 HOH HOH . E 4 HOH A 42 542 50 HOH HOH . E 4 HOH A 43 543 51 HOH HOH . E 4 HOH A 44 544 52 HOH HOH . E 4 HOH A 45 545 53 HOH HOH . E 4 HOH A 46 546 54 HOH HOH . E 4 HOH A 47 547 55 HOH HOH . E 4 HOH A 48 548 56 HOH HOH . E 4 HOH A 49 549 57 HOH HOH . E 4 HOH A 50 550 59 HOH HOH . E 4 HOH A 51 551 61 HOH HOH . E 4 HOH A 52 552 62 HOH HOH . E 4 HOH A 53 553 64 HOH HOH . E 4 HOH A 54 554 65 HOH HOH . E 4 HOH A 55 555 66 HOH HOH . E 4 HOH A 56 556 67 HOH HOH . E 4 HOH A 57 557 69 HOH HOH . E 4 HOH A 58 558 70 HOH HOH . E 4 HOH A 59 559 71 HOH HOH . E 4 HOH A 60 560 75 HOH HOH . E 4 HOH A 61 561 76 HOH HOH . E 4 HOH A 62 562 78 HOH HOH . E 4 HOH A 63 563 82 HOH HOH . E 4 HOH A 64 564 84 HOH HOH . E 4 HOH A 65 565 85 HOH HOH . E 4 HOH A 66 566 87 HOH HOH . E 4 HOH A 67 567 88 HOH HOH . E 4 HOH A 68 568 89 HOH HOH . E 4 HOH A 69 569 90 HOH HOH . E 4 HOH A 70 570 91 HOH HOH . E 4 HOH A 71 571 97 HOH HOH . E 4 HOH A 72 572 98 HOH HOH . E 4 HOH A 73 573 100 HOH HOH . E 4 HOH A 74 574 101 HOH HOH . E 4 HOH A 75 575 103 HOH HOH . E 4 HOH A 76 576 105 HOH HOH . E 4 HOH A 77 577 106 HOH HOH . E 4 HOH A 78 578 107 HOH HOH . E 4 HOH A 79 579 108 HOH HOH . E 4 HOH A 80 580 110 HOH HOH . E 4 HOH A 81 581 114 HOH HOH . E 4 HOH A 82 582 115 HOH HOH . E 4 HOH A 83 583 116 HOH HOH . E 4 HOH A 84 584 118 HOH HOH . E 4 HOH A 85 585 119 HOH HOH . E 4 HOH A 86 586 120 HOH HOH . E 4 HOH A 87 587 121 HOH HOH . E 4 HOH A 88 588 125 HOH HOH . E 4 HOH A 89 589 126 HOH HOH . E 4 HOH A 90 590 128 HOH HOH . E 4 HOH A 91 591 129 HOH HOH . E 4 HOH A 92 592 130 HOH HOH . E 4 HOH A 93 593 131 HOH HOH . E 4 HOH A 94 594 132 HOH HOH . E 4 HOH A 95 595 133 HOH HOH . E 4 HOH A 96 596 135 HOH HOH . E 4 HOH A 97 597 137 HOH HOH . E 4 HOH A 98 598 139 HOH HOH . E 4 HOH A 99 599 140 HOH HOH . E 4 HOH A 100 600 144 HOH HOH . E 4 HOH A 101 601 149 HOH HOH . E 4 HOH A 102 602 151 HOH HOH . E 4 HOH A 103 603 152 HOH HOH . E 4 HOH A 104 604 153 HOH HOH . E 4 HOH A 105 605 154 HOH HOH . E 4 HOH A 106 606 155 HOH HOH . E 4 HOH A 107 607 157 HOH HOH . E 4 HOH A 108 608 158 HOH HOH . E 4 HOH A 109 609 159 HOH HOH . E 4 HOH A 110 610 160 HOH HOH . E 4 HOH A 111 611 162 HOH HOH . E 4 HOH A 112 612 164 HOH HOH . E 4 HOH A 113 613 165 HOH HOH . E 4 HOH A 114 614 166 HOH HOH . E 4 HOH A 115 615 168 HOH HOH . E 4 HOH A 116 616 169 HOH HOH . E 4 HOH A 117 617 170 HOH HOH . E 4 HOH A 118 618 172 HOH HOH . E 4 HOH A 119 619 176 HOH HOH . E 4 HOH A 120 620 179 HOH HOH . E 4 HOH A 121 621 180 HOH HOH . E 4 HOH A 122 622 181 HOH HOH . E 4 HOH A 123 623 184 HOH HOH . E 4 HOH A 124 624 189 HOH HOH . E 4 HOH A 125 625 190 HOH HOH . E 4 HOH A 126 626 191 HOH HOH . E 4 HOH A 127 627 192 HOH HOH . E 4 HOH A 128 628 193 HOH HOH . E 4 HOH A 129 629 194 HOH HOH . E 4 HOH A 130 630 195 HOH HOH . E 4 HOH A 131 631 196 HOH HOH . E 4 HOH A 132 632 198 HOH HOH . E 4 HOH A 133 633 199 HOH HOH . E 4 HOH A 134 634 200 HOH HOH . E 4 HOH A 135 635 201 HOH HOH . E 4 HOH A 136 636 204 HOH HOH . E 4 HOH A 137 637 205 HOH HOH . E 4 HOH A 138 638 207 HOH HOH . E 4 HOH A 139 639 209 HOH HOH . E 4 HOH A 140 640 210 HOH HOH . E 4 HOH A 141 641 214 HOH HOH . E 4 HOH A 142 642 215 HOH HOH . E 4 HOH A 143 643 216 HOH HOH . E 4 HOH A 144 644 217 HOH HOH . E 4 HOH A 145 645 218 HOH HOH . E 4 HOH A 146 646 220 HOH HOH . E 4 HOH A 147 647 222 HOH HOH . E 4 HOH A 148 648 223 HOH HOH . E 4 HOH A 149 649 225 HOH HOH . E 4 HOH A 150 650 227 HOH HOH . E 4 HOH A 151 651 231 HOH HOH . E 4 HOH A 152 652 238 HOH HOH . E 4 HOH A 153 653 240 HOH HOH . E 4 HOH A 154 654 241 HOH HOH . E 4 HOH A 155 655 246 HOH HOH . E 4 HOH A 156 656 247 HOH HOH . E 4 HOH A 157 657 248 HOH HOH . E 4 HOH A 158 658 255 HOH HOH . E 4 HOH A 159 659 260 HOH HOH . E 4 HOH A 160 660 261 HOH HOH . E 4 HOH A 161 661 267 HOH HOH . E 4 HOH A 162 662 268 HOH HOH . E 4 HOH A 163 663 271 HOH HOH . E 4 HOH A 164 664 272 HOH HOH . E 4 HOH A 165 665 274 HOH HOH . E 4 HOH A 166 666 275 HOH HOH . E 4 HOH A 167 667 277 HOH HOH . E 4 HOH A 168 668 278 HOH HOH . E 4 HOH A 169 669 279 HOH HOH . E 4 HOH A 170 670 281 HOH HOH . E 4 HOH A 171 671 282 HOH HOH . E 4 HOH A 172 672 283 HOH HOH . E 4 HOH A 173 673 284 HOH HOH . E 4 HOH A 174 674 285 HOH HOH . E 4 HOH A 175 675 286 HOH HOH . E 4 HOH A 176 676 288 HOH HOH . E 4 HOH A 177 677 289 HOH HOH . E 4 HOH A 178 678 291 HOH HOH . E 4 HOH A 179 679 293 HOH HOH . E 4 HOH A 180 680 300 HOH HOH . E 4 HOH A 181 681 301 HOH HOH . E 4 HOH A 182 682 302 HOH HOH . E 4 HOH A 183 683 306 HOH HOH . E 4 HOH A 184 684 307 HOH HOH . E 4 HOH A 185 685 308 HOH HOH . E 4 HOH A 186 686 311 HOH HOH . E 4 HOH A 187 687 312 HOH HOH . E 4 HOH A 188 688 323 HOH HOH . E 4 HOH A 189 689 330 HOH HOH . E 4 HOH A 190 690 331 HOH HOH . E 4 HOH A 191 691 334 HOH HOH . E 4 HOH A 192 692 346 HOH HOH . E 4 HOH A 193 693 347 HOH HOH . E 4 HOH A 194 694 349 HOH HOH . E 4 HOH A 195 695 351 HOH HOH . E 4 HOH A 196 696 353 HOH HOH . E 4 HOH A 197 697 354 HOH HOH . E 4 HOH A 198 698 355 HOH HOH . E 4 HOH A 199 699 362 HOH HOH . E 4 HOH A 200 700 365 HOH HOH . E 4 HOH A 201 701 367 HOH HOH . E 4 HOH A 202 702 370 HOH HOH . E 4 HOH A 203 703 372 HOH HOH . E 4 HOH A 204 704 374 HOH HOH . E 4 HOH A 205 705 377 HOH HOH . E 4 HOH A 206 706 378 HOH HOH . E 4 HOH A 207 707 379 HOH HOH . E 4 HOH A 208 708 380 HOH HOH . E 4 HOH A 209 709 382 HOH HOH . E 4 HOH A 210 710 383 HOH HOH . E 4 HOH A 211 711 385 HOH HOH . E 4 HOH A 212 712 388 HOH HOH . E 4 HOH A 213 713 394 HOH HOH . E 4 HOH A 214 714 395 HOH HOH . E 4 HOH A 215 715 396 HOH HOH . E 4 HOH A 216 716 399 HOH HOH . E 4 HOH A 217 717 407 HOH HOH . E 4 HOH A 218 718 409 HOH HOH . E 4 HOH A 219 719 410 HOH HOH . E 4 HOH A 220 720 412 HOH HOH . E 4 HOH A 221 721 414 HOH HOH . E 4 HOH A 222 722 416 HOH HOH . E 4 HOH A 223 723 417 HOH HOH . E 4 HOH A 224 724 420 HOH HOH . E 4 HOH A 225 725 421 HOH HOH . E 4 HOH A 226 726 426 HOH HOH . E 4 HOH A 227 727 429 HOH HOH . E 4 HOH A 228 728 430 HOH HOH . E 4 HOH A 229 729 431 HOH HOH . E 4 HOH A 230 730 432 HOH HOH . E 4 HOH A 231 731 433 HOH HOH . E 4 HOH A 232 732 445 HOH HOH . E 4 HOH A 233 733 446 HOH HOH . E 4 HOH A 234 734 447 HOH HOH . E 4 HOH A 235 735 448 HOH HOH . E 4 HOH A 236 736 450 HOH HOH . E 4 HOH A 237 737 452 HOH HOH . E 4 HOH A 238 738 453 HOH HOH . E 4 HOH A 239 739 454 HOH HOH . E 4 HOH A 240 740 455 HOH HOH . E 4 HOH A 241 741 458 HOH HOH . E 4 HOH A 242 742 459 HOH HOH . E 4 HOH A 243 743 460 HOH HOH . E 4 HOH A 244 744 463 HOH HOH . E 4 HOH A 245 745 464 HOH HOH . E 4 HOH A 246 746 469 HOH HOH . E 4 HOH A 247 747 470 HOH HOH . E 4 HOH A 248 748 471 HOH HOH . E 4 HOH A 249 749 472 HOH HOH . E 4 HOH A 250 750 473 HOH HOH . E 4 HOH A 251 751 474 HOH HOH . E 4 HOH A 252 752 477 HOH HOH . E 4 HOH A 253 753 479 HOH HOH . E 4 HOH A 254 754 480 HOH HOH . E 4 HOH A 255 755 482 HOH HOH . E 4 HOH A 256 756 483 HOH HOH . E 4 HOH A 257 757 486 HOH HOH . E 4 HOH A 258 758 490 HOH HOH . E 4 HOH A 259 759 492 HOH HOH . E 4 HOH A 260 760 494 HOH HOH . E 4 HOH A 261 761 496 HOH HOH . E 4 HOH A 262 762 497 HOH HOH . E 4 HOH A 263 763 498 HOH HOH . E 4 HOH A 264 764 499 HOH HOH . E 4 HOH A 265 765 500 HOH HOH . E 4 HOH A 266 766 501 HOH HOH . E 4 HOH A 267 767 502 HOH HOH . E 4 HOH A 268 768 503 HOH HOH . E 4 HOH A 269 769 504 HOH HOH . E 4 HOH A 270 770 505 HOH HOH . E 4 HOH A 271 771 509 HOH HOH . E 4 HOH A 272 772 513 HOH HOH . E 4 HOH A 273 773 519 HOH HOH . E 4 HOH A 274 774 520 HOH HOH . E 4 HOH A 275 775 521 HOH HOH . E 4 HOH A 276 776 523 HOH HOH . E 4 HOH A 277 777 526 HOH HOH . E 4 HOH A 278 778 532 HOH HOH . E 4 HOH A 279 779 539 HOH HOH . E 4 HOH A 280 780 541 HOH HOH . E 4 HOH A 281 781 543 HOH HOH . E 4 HOH A 282 782 545 HOH HOH . E 4 HOH A 283 783 546 HOH HOH . E 4 HOH A 284 784 547 HOH HOH . E 4 HOH A 285 785 548 HOH HOH . E 4 HOH A 286 786 553 HOH HOH . E 4 HOH A 287 787 555 HOH HOH . E 4 HOH A 288 788 556 HOH HOH . E 4 HOH A 289 789 558 HOH HOH . E 4 HOH A 290 790 560 HOH HOH . E 4 HOH A 291 791 563 HOH HOH . E 4 HOH A 292 792 564 HOH HOH . E 4 HOH A 293 793 565 HOH HOH . E 4 HOH A 294 794 566 HOH HOH . E 4 HOH A 295 795 568 HOH HOH . E 4 HOH A 296 796 576 HOH HOH . E 4 HOH A 297 797 579 HOH HOH . E 4 HOH A 298 798 585 HOH HOH . E 4 HOH A 299 799 587 HOH HOH . E 4 HOH A 300 800 592 HOH HOH . E 4 HOH A 301 801 602 HOH HOH . E 4 HOH A 302 802 603 HOH HOH . E 4 HOH A 303 803 604 HOH HOH . E 4 HOH A 304 804 605 HOH HOH . E 4 HOH A 305 805 606 HOH HOH . E 4 HOH A 306 806 607 HOH HOH . E 4 HOH A 307 807 608 HOH HOH . E 4 HOH A 308 808 609 HOH HOH . E 4 HOH A 309 809 610 HOH HOH . E 4 HOH A 310 810 611 HOH HOH . E 4 HOH A 311 811 612 HOH HOH . E 4 HOH A 312 812 613 HOH HOH . E 4 HOH A 313 813 614 HOH HOH . E 4 HOH A 314 814 615 HOH HOH . E 4 HOH A 315 815 616 HOH HOH . E 4 HOH A 316 816 617 HOH HOH . E 4 HOH A 317 817 618 HOH HOH . E 4 HOH A 318 818 619 HOH HOH . E 4 HOH A 319 819 620 HOH HOH . E 4 HOH A 320 820 621 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . D 3 24.334 -31.59 -19.378 1 60.76 ? S DMS 403 A 1 HETATM 2 O O DMS . . . D 3 25.094 -30.445 -18.82 1 59.72 ? O DMS 403 A 1 HETATM 3 C C1 DMS . . . D 3 22.679 -31.202 -19.403 1 57.35 ? C1 DMS 403 A 1 HETATM 4 C C2 DMS . . . D 3 24.609 -31.653 -21.062 1 61.77 ? C2 DMS 403 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #