data_3V3O # _model_server_result.job_id fVvK3KjSc6sR1_zE41J_Yg _model_server_result.datetime_utc '2024-11-13 10:29:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3v3o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":404}' # _entry.id 3V3O # _exptl.entry_id 3V3O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 587.665 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description TIGECYCLINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 111.02 _cell.angle_beta 89.97 _cell.angle_gamma 92.97 _cell.entry_id 3V3O _cell.length_a 68.126 _cell.length_b 80.08 _cell.length_c 87.238 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3V3O _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,H,S 1 1 B,I,J,K,L,M,N,T 2 1 C,O,P,U 3 1 D,Q,R,V 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 M N N ? 4 O N N ? 4 Q N N # _chem_comp.formula 'C29 H41 N5 O8 2' _chem_comp.formula_weight 587.665 _chem_comp.id T1C _chem_comp.mon_nstd_flag . _chem_comp.name TIGECYCLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C94 C93 T1C sing 385 n n C93 C95 T1C sing 386 n n C93 C96 T1C sing 387 n n C93 N92 T1C sing 388 n n N92 C92 T1C sing 389 n n C92 C91 T1C sing 390 n n C91 O91 T1C doub 391 n n C91 N9 T1C sing 392 n n N9 C9 T1C sing 393 n n C9 C8 T1C doub 394 n y C9 C10 T1C sing 395 n y C8 C7 T1C sing 396 n y C7 N7 T1C sing 397 n n C7 C61 T1C doub 398 n y C6 C61 T1C sing 399 n n N7 C71 T1C sing 400 n n N7 C72 T1C sing 401 n n C61 C1A T1C sing 402 n y C6 C51 T1C sing 403 n n C51 C5 T1C sing 404 n n C51 C1B T1C sing 405 n n C5 C41 T1C sing 406 n n C41 C4 T1C sing 407 n n C41 C1C T1C sing 408 n n C4 N4 T1C sing 409 n n C4 C3 T1C sing 410 n n N4 C43 T1C sing 411 n n N4 C42 T1C sing 412 n n C3 O3 T1C sing 413 n n C3 C2 T1C doub 414 n n C2 C21 T1C sing 415 n n C2 C1 T1C sing 416 n n C21 O21 T1C doub 417 n n C21 N21 T1C sing 418 n n C1 O1 T1C doub 419 n n C1 C1C T1C sing 420 n n C1C O1C T1C sing 421 n n C1C C12 T1C sing 422 n n C12 O12 T1C sing 423 n n C12 C1B T1C doub 424 n n C1B C11 T1C sing 425 n n C11 O11 T1C doub 426 n n C11 C1A T1C sing 427 n n C1A C10 T1C doub 428 n y C10 O10 T1C sing 429 n n C94 H941 T1C sing 430 n n C94 H942 T1C sing 431 n n C94 H943 T1C sing 432 n n C95 H951 T1C sing 433 n n C95 H952 T1C sing 434 n n C95 H953 T1C sing 435 n n C96 H961 T1C sing 436 n n C96 H962 T1C sing 437 n n C96 H963 T1C sing 438 n n N92 H92 T1C sing 439 n n C92 H921 T1C sing 440 n n C92 H922 T1C sing 441 n n N9 H9 T1C sing 442 n n C8 H8 T1C sing 443 n n C71 H711 T1C sing 444 n n C71 H712 T1C sing 445 n n C71 H713 T1C sing 446 n n C72 H721 T1C sing 447 n n C72 H722 T1C sing 448 n n C72 H723 T1C sing 449 n n C6 H61C T1C sing 450 n n C6 H62C T1C sing 451 n n C51 H51 T1C sing 452 n n C5 H51C T1C sing 453 n n C5 H52C T1C sing 454 n n C41 H41 T1C sing 455 n n C4 H4 T1C sing 456 n n C43 H431 T1C sing 457 n n C43 H432 T1C sing 458 n n C43 H433 T1C sing 459 n n C42 H421 T1C sing 460 n n C42 H422 T1C sing 461 n n C42 H423 T1C sing 462 n n O3 H3 T1C sing 463 n n N21 H211 T1C sing 464 n n N21 H212 T1C sing 465 n n O1C H1C T1C sing 466 n n O12 H12 T1C sing 467 n n O10 H10 T1C sing 468 n n N4 H42 T1C sing 469 n n N7 H7 T1C sing 470 n n # _atom_sites.entry_id 3V3O _atom_sites.fract_transf_matrix[1][1] 0.014679 _atom_sites.fract_transf_matrix[1][2] 0.000762 _atom_sites.fract_transf_matrix[1][3] 0.000285 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012504 _atom_sites.fract_transf_matrix[2][3] 0.004812 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012282 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SO4 A 1 401 401 SO4 SO4 . F 2 SO4 A 1 402 402 SO4 SO4 . G 3 FAD A 1 403 406 FAD FAD . H 4 T1C A 1 404 392 T1C T1C . I 2 SO4 B 1 401 402 SO4 SO4 . J 2 SO4 B 1 402 407 SO4 SO4 . K 3 FAD B 1 403 408 FAD FAD . L 2 SO4 B 1 404 403 SO4 SO4 . M 4 T1C B 1 405 392 T1C T1C . N 2 SO4 B 1 406 404 SO4 SO4 . O 4 T1C C 1 401 394 T1C T1C . P 3 FAD C 1 402 1384 FAD FAD . Q 4 T1C D 1 401 395 T1C T1C . R 3 FAD D 1 402 1384 FAD FAD . S 5 HOH A 1 501 502 HOH HOH . S 5 HOH A 2 502 503 HOH HOH . S 5 HOH A 3 503 506 HOH HOH . S 5 HOH A 4 504 508 HOH HOH . S 5 HOH A 5 505 509 HOH HOH . S 5 HOH A 6 506 511 HOH HOH . S 5 HOH A 7 507 512 HOH HOH . T 5 HOH B 1 501 501 HOH HOH . T 5 HOH B 2 502 504 HOH HOH . T 5 HOH B 3 503 509 HOH HOH . T 5 HOH B 4 504 510 HOH HOH . T 5 HOH B 5 505 512 HOH HOH . T 5 HOH B 6 506 514 HOH HOH . T 5 HOH B 7 507 516 HOH HOH . T 5 HOH B 8 508 517 HOH HOH . T 5 HOH B 9 509 519 HOH HOH . U 5 HOH C 1 501 506 HOH HOH . U 5 HOH C 2 502 508 HOH HOH . V 5 HOH D 1 501 501 HOH HOH . V 5 HOH D 2 502 502 HOH HOH . V 5 HOH D 3 503 507 HOH HOH . V 5 HOH D 4 504 508 HOH HOH . V 5 HOH D 5 505 510 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C94 T1C . . . H 4 13.93 39.194 1.775 1 83.41 ? C94 T1C 404 A 1 HETATM 2 C C93 T1C . . . H 4 13.772 38.061 0.804 1 87.91 ? C93 T1C 404 A 1 HETATM 3 C C95 T1C . . . H 4 12.338 37.611 0.838 1 79.41 ? C95 T1C 404 A 1 HETATM 4 C C96 T1C . . . H 4 14.697 36.915 1.248 1 85.3 ? C96 T1C 404 A 1 HETATM 5 N N92 T1C . . . H 4 14.132 38.513 -0.548 1 78.67 ? N92 T1C 404 A 1 HETATM 6 C C92 T1C . . . H 4 13.583 37.667 -1.613 1 73.32 ? C92 T1C 404 A 1 HETATM 7 C C91 T1C . . . H 4 14.682 37.366 -2.645 1 81.51 ? C91 T1C 404 A 1 HETATM 8 O O91 T1C . . . H 4 14.993 38.22 -3.473 1 81.5 ? O91 T1C 404 A 1 HETATM 9 N N9 T1C . . . H 4 15.348 36.039 -2.639 1 76.6 ? N9 T1C 404 A 1 HETATM 10 C C9 T1C . . . H 4 16.41 35.636 -3.608 1 66.56 ? C9 T1C 404 A 1 HETATM 11 C C8 T1C . . . H 4 17.529 36.489 -3.868 1 63.78 ? C8 T1C 404 A 1 HETATM 12 C C7 T1C . . . H 4 18.575 36.128 -4.786 1 69.9 ? C7 T1C 404 A 1 HETATM 13 N N7 T1C . . . H 4 19.688 37.105 -4.974 1 74.76 ? N7 T1C 404 A 1 HETATM 14 C C71 T1C . . . H 4 19.469 38.277 -4.148 1 74.09 ? C71 T1C 404 A 1 HETATM 15 C C72 T1C . . . H 4 20.969 36.559 -4.618 1 70.36 ? C72 T1C 404 A 1 HETATM 16 C C61 T1C . . . H 4 18.469 34.764 -5.521 1 69.87 ? C61 T1C 404 A 1 HETATM 17 C C6 T1C . . . H 4 19.577 34.308 -6.557 1 68.81 ? C6 T1C 404 A 1 HETATM 18 C C51 T1C . . . H 4 19.131 33.238 -7.61 1 57.44 ? C51 T1C 404 A 1 HETATM 19 C C5 T1C . . . H 4 20.344 32.459 -8.102 1 57.17 ? C5 T1C 404 A 1 HETATM 20 C C41 T1C . . . H 4 19.929 31.367 -9.141 1 56.71 ? C41 T1C 404 A 1 HETATM 21 C C4 T1C . . . H 4 21.171 30.461 -9.523 1 57.9 ? C4 T1C 404 A 1 HETATM 22 N N4 T1C . . . H 4 21.483 30.665 -10.976 1 57.14 ? N4 T1C 404 A 1 HETATM 23 C C43 T1C . . . H 4 20.984 31.912 -11.584 1 56.77 ? C43 T1C 404 A 1 HETATM 24 C C42 T1C . . . H 4 22.897 30.497 -11.286 1 44.86 ? C42 T1C 404 A 1 HETATM 25 C C3 T1C . . . H 4 21.129 28.944 -9.147 1 60.31 ? C3 T1C 404 A 1 HETATM 26 O O3 T1C . . . H 4 22.292 28.16 -9.186 1 53.98 ? O3 T1C 404 A 1 HETATM 27 C C2 T1C . . . H 4 19.936 28.314 -8.779 1 65.32 ? C2 T1C 404 A 1 HETATM 28 C C21 T1C . . . H 4 19.852 26.839 -8.451 1 60.44 ? C21 T1C 404 A 1 HETATM 29 O O21 T1C . . . H 4 20.546 26.02 -9.048 1 52.1 ? O21 T1C 404 A 1 HETATM 30 N N21 T1C . . . H 4 18.906 26.36 -7.484 1 56.96 ? N21 T1C 404 A 1 HETATM 31 C C1 T1C . . . H 4 18.668 29.073 -8.743 1 65.35 ? C1 T1C 404 A 1 HETATM 32 O O1 T1C . . . H 4 17.478 28.342 -8.613 1 62.77 ? O1 T1C 404 A 1 HETATM 33 C C1C T1C . . . H 4 18.616 30.575 -8.846 1 58.9 ? C1C T1C 404 A 1 HETATM 34 O O1C T1C . . . H 4 17.86 30.888 -9.939 1 59.16 ? O1C T1C 404 A 1 HETATM 35 C C12 T1C . . . H 4 17.898 31.095 -7.626 1 64.58 ? C12 T1C 404 A 1 HETATM 36 O O12 T1C . . . H 4 16.914 30.3 -7.051 1 64.03 ? O12 T1C 404 A 1 HETATM 37 C C1B T1C . . . H 4 18.138 32.279 -7.093 1 63.65 ? C1B T1C 404 A 1 HETATM 38 C C11 T1C . . . H 4 17.295 32.633 -5.948 1 65.92 ? C11 T1C 404 A 1 HETATM 39 O O11 T1C . . . H 4 16.323 31.715 -5.549 1 71.77 ? O11 T1C 404 A 1 HETATM 40 C C1A T1C . . . H 4 17.413 33.938 -5.269 1 64.88 ? C1A T1C 404 A 1 HETATM 41 C C10 T1C . . . H 4 16.312 34.351 -4.285 1 66.24 ? C10 T1C 404 A 1 HETATM 42 O O10 T1C . . . H 4 15.216 33.503 -4.027 1 65.64 ? O10 T1C 404 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 53 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 42 #