data_3V3O
#
_model_server_result.job_id            UQIbOOEbsSU2QyYbVYrpXg 
_model_server_result.datetime_utc      '2024-11-13 10:40:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3v3o 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":405}' 
#
_entry.id    3V3O 
#
_exptl.entry_id    3V3O 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              587.665 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            TIGECYCLINE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         111.02 
_cell.angle_beta          89.97 
_cell.angle_gamma         92.97 
_cell.entry_id            3V3O 
_cell.length_a            68.126 
_cell.length_b            80.08 
_cell.length_c            87.238 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3V3O 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,G,H,S 1 1 
B,I,J,K,L,M,N,T 2 1 
C,O,P,U 3 1 
D,Q,R,V 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 H N N 
? 4 M N N 
? 4 O N N 
? 4 Q N N 
#
_chem_comp.formula           'C29 H41 N5 O8 2' 
_chem_comp.formula_weight    587.665 
_chem_comp.id                T1C 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              TIGECYCLINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C94 C93 T1C sing 385 n n 
C93 C95 T1C sing 386 n n 
C93 C96 T1C sing 387 n n 
C93 N92 T1C sing 388 n n 
N92 C92 T1C sing 389 n n 
C92 C91 T1C sing 390 n n 
C91 O91 T1C doub 391 n n 
C91 N9 T1C sing 392 n n 
N9 C9 T1C sing 393 n n 
C9 C8 T1C doub 394 n y 
C9 C10 T1C sing 395 n y 
C8 C7 T1C sing 396 n y 
C7 N7 T1C sing 397 n n 
C7 C61 T1C doub 398 n y 
C6 C61 T1C sing 399 n n 
N7 C71 T1C sing 400 n n 
N7 C72 T1C sing 401 n n 
C61 C1A T1C sing 402 n y 
C6 C51 T1C sing 403 n n 
C51 C5 T1C sing 404 n n 
C51 C1B T1C sing 405 n n 
C5 C41 T1C sing 406 n n 
C41 C4 T1C sing 407 n n 
C41 C1C T1C sing 408 n n 
C4 N4 T1C sing 409 n n 
C4 C3 T1C sing 410 n n 
N4 C43 T1C sing 411 n n 
N4 C42 T1C sing 412 n n 
C3 O3 T1C sing 413 n n 
C3 C2 T1C doub 414 n n 
C2 C21 T1C sing 415 n n 
C2 C1 T1C sing 416 n n 
C21 O21 T1C doub 417 n n 
C21 N21 T1C sing 418 n n 
C1 O1 T1C doub 419 n n 
C1 C1C T1C sing 420 n n 
C1C O1C T1C sing 421 n n 
C1C C12 T1C sing 422 n n 
C12 O12 T1C sing 423 n n 
C12 C1B T1C doub 424 n n 
C1B C11 T1C sing 425 n n 
C11 O11 T1C doub 426 n n 
C11 C1A T1C sing 427 n n 
C1A C10 T1C doub 428 n y 
C10 O10 T1C sing 429 n n 
C94 H941 T1C sing 430 n n 
C94 H942 T1C sing 431 n n 
C94 H943 T1C sing 432 n n 
C95 H951 T1C sing 433 n n 
C95 H952 T1C sing 434 n n 
C95 H953 T1C sing 435 n n 
C96 H961 T1C sing 436 n n 
C96 H962 T1C sing 437 n n 
C96 H963 T1C sing 438 n n 
N92 H92 T1C sing 439 n n 
C92 H921 T1C sing 440 n n 
C92 H922 T1C sing 441 n n 
N9 H9 T1C sing 442 n n 
C8 H8 T1C sing 443 n n 
C71 H711 T1C sing 444 n n 
C71 H712 T1C sing 445 n n 
C71 H713 T1C sing 446 n n 
C72 H721 T1C sing 447 n n 
C72 H722 T1C sing 448 n n 
C72 H723 T1C sing 449 n n 
C6 H61C T1C sing 450 n n 
C6 H62C T1C sing 451 n n 
C51 H51 T1C sing 452 n n 
C5 H51C T1C sing 453 n n 
C5 H52C T1C sing 454 n n 
C41 H41 T1C sing 455 n n 
C4 H4 T1C sing 456 n n 
C43 H431 T1C sing 457 n n 
C43 H432 T1C sing 458 n n 
C43 H433 T1C sing 459 n n 
C42 H421 T1C sing 460 n n 
C42 H422 T1C sing 461 n n 
C42 H423 T1C sing 462 n n 
O3 H3 T1C sing 463 n n 
N21 H211 T1C sing 464 n n 
N21 H212 T1C sing 465 n n 
O1C H1C T1C sing 466 n n 
O12 H12 T1C sing 467 n n 
O10 H10 T1C sing 468 n n 
N4 H42 T1C sing 469 n n 
N7 H7 T1C sing 470 n n 
#
_atom_sites.entry_id                     3V3O 
_atom_sites.fract_transf_matrix[1][1]    0.014679 
_atom_sites.fract_transf_matrix[1][2]    0.000762 
_atom_sites.fract_transf_matrix[1][3]    0.000285 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012504 
_atom_sites.fract_transf_matrix[2][3]    0.004812 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012282 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 SO4 A 1 401 401 SO4 SO4 . 
F 2 SO4 A 1 402 402 SO4 SO4 . 
G 3 FAD A 1 403 406 FAD FAD . 
H 4 T1C A 1 404 392 T1C T1C . 
I 2 SO4 B 1 401 402 SO4 SO4 . 
J 2 SO4 B 1 402 407 SO4 SO4 . 
K 3 FAD B 1 403 408 FAD FAD . 
L 2 SO4 B 1 404 403 SO4 SO4 . 
M 4 T1C B 1 405 392 T1C T1C . 
N 2 SO4 B 1 406 404 SO4 SO4 . 
O 4 T1C C 1 401 394 T1C T1C . 
P 3 FAD C 1 402 1384 FAD FAD . 
Q 4 T1C D 1 401 395 T1C T1C . 
R 3 FAD D 1 402 1384 FAD FAD . 
S 5 HOH A 1 501 502 HOH HOH . 
S 5 HOH A 2 502 503 HOH HOH . 
S 5 HOH A 3 503 506 HOH HOH . 
S 5 HOH A 4 504 508 HOH HOH . 
S 5 HOH A 5 505 509 HOH HOH . 
S 5 HOH A 6 506 511 HOH HOH . 
S 5 HOH A 7 507 512 HOH HOH . 
T 5 HOH B 1 501 501 HOH HOH . 
T 5 HOH B 2 502 504 HOH HOH . 
T 5 HOH B 3 503 509 HOH HOH . 
T 5 HOH B 4 504 510 HOH HOH . 
T 5 HOH B 5 505 512 HOH HOH . 
T 5 HOH B 6 506 514 HOH HOH . 
T 5 HOH B 7 507 516 HOH HOH . 
T 5 HOH B 8 508 517 HOH HOH . 
T 5 HOH B 9 509 519 HOH HOH . 
U 5 HOH C 1 501 506 HOH HOH . 
U 5 HOH C 2 502 508 HOH HOH . 
V 5 HOH D 1 501 501 HOH HOH . 
V 5 HOH D 2 502 502 HOH HOH . 
V 5 HOH D 3 503 507 HOH HOH . 
V 5 HOH D 4 504 508 HOH HOH . 
V 5 HOH D 5 505 510 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C94 T1C . . . M 4 41.113 44.424 -3.552 1 109.16 ? C94 T1C 405 B 1 
HETATM 2 C C93 T1C . . . M 4 41.468 43.242 -2.706 1 105.19 ? C93 T1C 405 B 1 
HETATM 3 C C95 T1C . . . M 4 40.204 42.762 -2.051 1 96.96 ? C95 T1C 405 B 1 
HETATM 4 C C96 T1C . . . M 4 42.013 42.142 -3.636 1 97.72 ? C96 T1C 405 B 1 
HETATM 5 N N92 T1C . . . M 4 42.451 43.672 -1.694 1 100.7 ? N92 T1C 405 B 1 
HETATM 6 C C92 T1C . . . M 4 43.43 44.695 -2.105 1 98.65 ? C92 T1C 405 B 1 
HETATM 7 C C91 T1C . . . M 4 44.485 44.847 -0.995 1 95.3 ? C91 T1C 405 B 1 
HETATM 8 O O91 T1C . . . M 4 44.743 43.879 -0.29 1 92.9 ? O91 T1C 405 B 1 
HETATM 9 N N9 T1C . . . M 4 45.16 46.16 -0.803 1 91.3 ? N9 T1C 405 B 1 
HETATM 10 C C9 T1C . . . M 4 46.203 46.447 0.22 1 77.02 ? C9 T1C 405 B 1 
HETATM 11 C C8 T1C . . . M 4 47.281 45.534 0.413 1 74.44 ? C8 T1C 405 B 1 
HETATM 12 C C7 T1C . . . M 4 48.315 45.776 1.372 1 80.96 ? C7 T1C 405 B 1 
HETATM 13 N N7 T1C . . . M 4 49.385 44.754 1.491 1 86.01 ? N7 T1C 405 B 1 
HETATM 14 C C71 T1C . . . M 4 50.623 45.247 0.94 1 85.25 ? C71 T1C 405 B 1 
HETATM 15 C C72 T1C . . . M 4 49.015 43.564 0.781 1 81.24 ? C72 T1C 405 B 1 
HETATM 16 C C61 T1C . . . M 4 48.265 47.068 2.224 1 83.7 ? C61 T1C 405 B 1 
HETATM 17 C C6 T1C . . . M 4 49.383 47.366 3.305 1 83.36 ? C6 T1C 405 B 1 
HETATM 18 C C51 T1C . . . M 4 48.955 48.372 4.446 1 73.77 ? C51 T1C 405 B 1 
HETATM 19 C C5 T1C . . . M 4 50.161 48.995 5.146 1 64.87 ? C5 T1C 405 B 1 
HETATM 20 C C41 T1C . . . M 4 49.67 49.955 6.273 1 65.77 ? C41 T1C 405 B 1 
HETATM 21 C C4 T1C . . . M 4 50.886 50.435 7.163 1 72.3 ? C4 T1C 405 B 1 
HETATM 22 N N4 T1C . . . M 4 50.666 49.858 8.527 1 74.71 ? N4 T1C 405 B 1 
HETATM 23 C C43 T1C . . . M 4 51.798 50.037 9.442 1 63.79 ? C43 T1C 405 B 1 
HETATM 24 C C42 T1C . . . M 4 50.317 48.424 8.489 1 67.13 ? C42 T1C 405 B 1 
HETATM 25 C C3 T1C . . . M 4 51.293 51.946 7.084 1 67.1 ? C3 T1C 405 B 1 
HETATM 26 O O3 T1C . . . M 4 52.424 52.311 7.817 1 61.52 ? O3 T1C 405 B 1 
HETATM 27 C C2 T1C . . . M 4 50.59 52.91 6.294 1 73.64 ? C2 T1C 405 B 1 
HETATM 28 C C21 T1C . . . M 4 50.958 54.404 6.187 1 67.64 ? C21 T1C 405 B 1 
HETATM 29 O O21 T1C . . . M 4 52.076 54.759 6.531 1 64.02 ? O21 T1C 405 B 1 
HETATM 30 N N21 T1C . . . M 4 50.077 55.462 5.696 1 41.43 ? N21 T1C 405 B 1 
HETATM 31 C C1 T1C . . . M 4 49.392 52.456 5.541 1 73.74 ? C1 T1C 405 B 1 
HETATM 32 O O1 T1C . . . M 4 48.807 53.331 4.619 1 80.13 ? O1 T1C 405 B 1 
HETATM 33 C C1C T1C . . . M 4 48.755 51.117 5.794 1 66.7 ? C1C T1C 405 B 1 
HETATM 34 O O1C T1C . . . M 4 47.922 51.343 6.848 1 65.21 ? O1C T1C 405 B 1 
HETATM 35 C C12 T1C . . . M 4 47.954 50.672 4.585 1 75.95 ? C12 T1C 405 B 1 
HETATM 36 O O12 T1C . . . M 4 47.045 51.579 4.051 1 76.53 ? O12 T1C 405 B 1 
HETATM 37 C C1B T1C . . . M 4 48.056 49.466 4.004 1 77.56 ? C1B T1C 405 B 1 
HETATM 38 C C11 T1C . . . M 4 47.176 49.211 2.848 1 79.26 ? C11 T1C 405 B 1 
HETATM 39 O O11 T1C . . . M 4 46.239 50.193 2.535 1 88.68 ? O11 T1C 405 B 1 
HETATM 40 C C1A T1C . . . M 4 47.248 47.962 2.043 1 80.69 ? C1A T1C 405 B 1 
HETATM 41 C C10 T1C . . . M 4 46.153 47.67 1 1 80.09 ? C10 T1C 405 B 1 
HETATM 42 O O10 T1C . . . M 4 45.088 48.56 0.788 1 79.55 ? O10 T1C 405 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    33 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           42 
#