data_3V3R # _model_server_result.job_id lsMYjdYSN63Ssv3MFcGP2Q _model_server_result.datetime_utc '2024-11-12 20:42:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3v3r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":296}' # _entry.id 3V3R # _exptl.entry_id 3V3R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 126.904 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IODIDE ION' _entity.pdbx_number_of_molecules 23 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3V3R _cell.length_a 70.68 _cell.length_b 85.24 _cell.length_c 85.12 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3V3R _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,AA 1 1 B,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,BA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N ? 2 U N N ? 2 V N N ? 2 W N N ? 2 X N N ? 2 Y N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 63 A CYS 63 1_555 A SG CYS 233 A CYS 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 B SG CYS 63 B CYS 63 1_555 B SG CYS 233 B CYS 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? # _chem_comp.formula 'I -1' _chem_comp.formula_weight 126.904 _chem_comp.id IOD _chem_comp.mon_nstd_flag . _chem_comp.name 'IODIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3V3R _atom_sites.fract_transf_matrix[1][1] 0.014148 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011732 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011748 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 IOD A 1 288 1 IOD IOD . D 2 IOD A 1 289 2 IOD IOD . E 2 IOD A 1 290 3 IOD IOD . F 2 IOD A 1 291 4 IOD IOD . G 2 IOD A 1 292 6 IOD IOD . H 2 IOD A 1 293 14 IOD IOD . I 2 IOD A 1 294 17 IOD IOD . J 2 IOD A 1 295 18 IOD IOD . K 2 IOD A 1 296 20 IOD IOD . L 2 IOD A 1 297 22 IOD IOD . M 2 IOD A 1 298 23 IOD IOD . N 2 IOD B 1 288 5 IOD IOD . O 2 IOD B 1 289 7 IOD IOD . P 2 IOD B 1 290 8 IOD IOD . Q 2 IOD B 1 291 9 IOD IOD . R 2 IOD B 1 292 10 IOD IOD . S 2 IOD B 1 293 11 IOD IOD . T 2 IOD B 1 294 12 IOD IOD . U 2 IOD B 1 295 13 IOD IOD . V 2 IOD B 1 296 15 IOD IOD . W 2 IOD B 1 297 16 IOD IOD . X 2 IOD B 1 298 19 IOD IOD . Y 2 IOD B 1 299 21 IOD IOD . Z 3 NA B 1 300 1 NA NA . AA 4 HOH A 1 299 1 HOH HOH . AA 4 HOH A 2 300 4 HOH HOH . AA 4 HOH A 3 301 6 HOH HOH . AA 4 HOH A 4 302 7 HOH HOH . AA 4 HOH A 5 303 11 HOH HOH . AA 4 HOH A 6 304 13 HOH HOH . AA 4 HOH A 7 305 15 HOH HOH . AA 4 HOH A 8 306 18 HOH HOH . AA 4 HOH A 9 307 19 HOH HOH . AA 4 HOH A 10 308 20 HOH HOH . AA 4 HOH A 11 309 22 HOH HOH . AA 4 HOH A 12 310 23 HOH HOH . AA 4 HOH A 13 311 24 HOH HOH . AA 4 HOH A 14 312 26 HOH HOH . AA 4 HOH A 15 313 29 HOH HOH . AA 4 HOH A 16 314 31 HOH HOH . AA 4 HOH A 17 315 38 HOH HOH . AA 4 HOH A 18 316 39 HOH HOH . AA 4 HOH A 19 317 40 HOH HOH . AA 4 HOH A 20 318 41 HOH HOH . AA 4 HOH A 21 319 42 HOH HOH . AA 4 HOH A 22 320 43 HOH HOH . AA 4 HOH A 23 321 44 HOH HOH . AA 4 HOH A 24 322 45 HOH HOH . AA 4 HOH A 25 323 46 HOH HOH . AA 4 HOH A 26 324 47 HOH HOH . AA 4 HOH A 27 325 49 HOH HOH . AA 4 HOH A 28 326 50 HOH HOH . AA 4 HOH A 29 327 51 HOH HOH . AA 4 HOH A 30 328 52 HOH HOH . AA 4 HOH A 31 329 53 HOH HOH . AA 4 HOH A 32 330 55 HOH HOH . AA 4 HOH A 33 331 56 HOH HOH . AA 4 HOH A 34 332 58 HOH HOH . AA 4 HOH A 35 333 60 HOH HOH . AA 4 HOH A 36 334 64 HOH HOH . AA 4 HOH A 37 335 65 HOH HOH . AA 4 HOH A 38 336 66 HOH HOH . AA 4 HOH A 39 337 67 HOH HOH . AA 4 HOH A 40 338 68 HOH HOH . AA 4 HOH A 41 339 71 HOH HOH . AA 4 HOH A 42 340 72 HOH HOH . AA 4 HOH A 43 341 74 HOH HOH . AA 4 HOH A 44 342 75 HOH HOH . AA 4 HOH A 45 343 77 HOH HOH . AA 4 HOH A 46 344 78 HOH HOH . AA 4 HOH A 47 345 80 HOH HOH . AA 4 HOH A 48 346 81 HOH HOH . AA 4 HOH A 49 347 82 HOH HOH . AA 4 HOH A 50 348 84 HOH HOH . AA 4 HOH A 51 349 85 HOH HOH . AA 4 HOH A 52 350 87 HOH HOH . AA 4 HOH A 53 351 89 HOH HOH . AA 4 HOH A 54 352 94 HOH HOH . AA 4 HOH A 55 353 95 HOH HOH . AA 4 HOH A 56 354 96 HOH HOH . AA 4 HOH A 57 355 97 HOH HOH . AA 4 HOH A 58 356 99 HOH HOH . AA 4 HOH A 59 357 103 HOH HOH . AA 4 HOH A 60 358 107 HOH HOH . AA 4 HOH A 61 359 108 HOH HOH . AA 4 HOH A 62 360 109 HOH HOH . AA 4 HOH A 63 361 111 HOH HOH . AA 4 HOH A 64 362 114 HOH HOH . AA 4 HOH A 65 363 120 HOH HOH . AA 4 HOH A 66 364 121 HOH HOH . AA 4 HOH A 67 365 124 HOH HOH . AA 4 HOH A 68 366 126 HOH HOH . AA 4 HOH A 69 367 127 HOH HOH . AA 4 HOH A 70 368 129 HOH HOH . AA 4 HOH A 71 369 131 HOH HOH . AA 4 HOH A 72 370 132 HOH HOH . AA 4 HOH A 73 371 133 HOH HOH . AA 4 HOH A 74 372 134 HOH HOH . AA 4 HOH A 75 373 135 HOH HOH . AA 4 HOH A 76 374 136 HOH HOH . AA 4 HOH A 77 375 137 HOH HOH . AA 4 HOH A 78 376 138 HOH HOH . AA 4 HOH A 79 377 139 HOH HOH . AA 4 HOH A 80 378 143 HOH HOH . AA 4 HOH A 81 379 144 HOH HOH . AA 4 HOH A 82 380 145 HOH HOH . AA 4 HOH A 83 381 146 HOH HOH . AA 4 HOH A 84 382 150 HOH HOH . AA 4 HOH A 85 383 151 HOH HOH . AA 4 HOH A 86 384 152 HOH HOH . AA 4 HOH A 87 385 154 HOH HOH . AA 4 HOH A 88 386 155 HOH HOH . AA 4 HOH A 89 387 156 HOH HOH . AA 4 HOH A 90 388 158 HOH HOH . AA 4 HOH A 91 389 159 HOH HOH . AA 4 HOH A 92 390 161 HOH HOH . AA 4 HOH A 93 391 163 HOH HOH . AA 4 HOH A 94 392 166 HOH HOH . AA 4 HOH A 95 393 168 HOH HOH . AA 4 HOH A 96 394 169 HOH HOH . AA 4 HOH A 97 395 172 HOH HOH . AA 4 HOH A 98 396 173 HOH HOH . AA 4 HOH A 99 397 178 HOH HOH . AA 4 HOH A 100 398 179 HOH HOH . AA 4 HOH A 101 399 182 HOH HOH . AA 4 HOH A 102 400 183 HOH HOH . AA 4 HOH A 103 401 184 HOH HOH . AA 4 HOH A 104 402 186 HOH HOH . AA 4 HOH A 105 403 187 HOH HOH . AA 4 HOH A 106 404 188 HOH HOH . AA 4 HOH A 107 405 190 HOH HOH . AA 4 HOH A 108 406 191 HOH HOH . AA 4 HOH A 109 407 192 HOH HOH . AA 4 HOH A 110 408 193 HOH HOH . AA 4 HOH A 111 409 194 HOH HOH . AA 4 HOH A 112 410 195 HOH HOH . AA 4 HOH A 113 411 196 HOH HOH . AA 4 HOH A 114 412 197 HOH HOH . AA 4 HOH A 115 413 200 HOH HOH . AA 4 HOH A 116 414 201 HOH HOH . AA 4 HOH A 117 415 205 HOH HOH . AA 4 HOH A 118 416 208 HOH HOH . AA 4 HOH A 119 417 209 HOH HOH . AA 4 HOH A 120 418 211 HOH HOH . AA 4 HOH A 121 419 212 HOH HOH . AA 4 HOH A 122 420 213 HOH HOH . AA 4 HOH A 123 421 216 HOH HOH . AA 4 HOH A 124 422 217 HOH HOH . AA 4 HOH A 125 423 219 HOH HOH . AA 4 HOH A 126 424 221 HOH HOH . AA 4 HOH A 127 425 226 HOH HOH . AA 4 HOH A 128 426 228 HOH HOH . AA 4 HOH A 129 427 229 HOH HOH . AA 4 HOH A 130 428 231 HOH HOH . AA 4 HOH A 131 429 232 HOH HOH . AA 4 HOH A 132 430 233 HOH HOH . AA 4 HOH A 133 431 235 HOH HOH . AA 4 HOH A 134 432 238 HOH HOH . AA 4 HOH A 135 433 239 HOH HOH . AA 4 HOH A 136 434 243 HOH HOH . AA 4 HOH A 137 435 244 HOH HOH . AA 4 HOH A 138 436 246 HOH HOH . AA 4 HOH A 139 437 248 HOH HOH . AA 4 HOH A 140 438 249 HOH HOH . AA 4 HOH A 141 439 250 HOH HOH . AA 4 HOH A 142 440 251 HOH HOH . AA 4 HOH A 143 441 253 HOH HOH . AA 4 HOH A 144 442 257 HOH HOH . AA 4 HOH A 145 443 262 HOH HOH . BA 4 HOH B 1 301 2 HOH HOH . BA 4 HOH B 2 302 3 HOH HOH . BA 4 HOH B 3 303 5 HOH HOH . BA 4 HOH B 4 304 8 HOH HOH . BA 4 HOH B 5 305 9 HOH HOH . BA 4 HOH B 6 306 10 HOH HOH . BA 4 HOH B 7 307 12 HOH HOH . BA 4 HOH B 8 308 14 HOH HOH . BA 4 HOH B 9 309 16 HOH HOH . BA 4 HOH B 10 310 17 HOH HOH . BA 4 HOH B 11 311 21 HOH HOH . BA 4 HOH B 12 312 25 HOH HOH . BA 4 HOH B 13 313 27 HOH HOH . BA 4 HOH B 14 314 28 HOH HOH . BA 4 HOH B 15 315 30 HOH HOH . BA 4 HOH B 16 316 32 HOH HOH . BA 4 HOH B 17 317 33 HOH HOH . BA 4 HOH B 18 318 34 HOH HOH . BA 4 HOH B 19 319 35 HOH HOH . BA 4 HOH B 20 320 36 HOH HOH . BA 4 HOH B 21 321 37 HOH HOH . BA 4 HOH B 22 322 48 HOH HOH . BA 4 HOH B 23 323 54 HOH HOH . BA 4 HOH B 24 324 57 HOH HOH . BA 4 HOH B 25 325 59 HOH HOH . BA 4 HOH B 26 326 61 HOH HOH . BA 4 HOH B 27 327 62 HOH HOH . BA 4 HOH B 28 328 63 HOH HOH . BA 4 HOH B 29 329 69 HOH HOH . BA 4 HOH B 30 330 70 HOH HOH . BA 4 HOH B 31 331 73 HOH HOH . BA 4 HOH B 32 332 76 HOH HOH . BA 4 HOH B 33 333 79 HOH HOH . BA 4 HOH B 34 334 83 HOH HOH . BA 4 HOH B 35 335 86 HOH HOH . BA 4 HOH B 36 336 88 HOH HOH . BA 4 HOH B 37 337 90 HOH HOH . BA 4 HOH B 38 338 91 HOH HOH . BA 4 HOH B 39 339 92 HOH HOH . BA 4 HOH B 40 340 93 HOH HOH . BA 4 HOH B 41 341 98 HOH HOH . BA 4 HOH B 42 342 100 HOH HOH . BA 4 HOH B 43 343 101 HOH HOH . BA 4 HOH B 44 344 102 HOH HOH . BA 4 HOH B 45 345 104 HOH HOH . BA 4 HOH B 46 346 105 HOH HOH . BA 4 HOH B 47 347 106 HOH HOH . BA 4 HOH B 48 348 110 HOH HOH . BA 4 HOH B 49 349 112 HOH HOH . BA 4 HOH B 50 350 113 HOH HOH . BA 4 HOH B 51 351 115 HOH HOH . BA 4 HOH B 52 352 116 HOH HOH . BA 4 HOH B 53 353 117 HOH HOH . BA 4 HOH B 54 354 118 HOH HOH . BA 4 HOH B 55 355 119 HOH HOH . BA 4 HOH B 56 356 122 HOH HOH . BA 4 HOH B 57 357 123 HOH HOH . BA 4 HOH B 58 358 125 HOH HOH . BA 4 HOH B 59 359 128 HOH HOH . BA 4 HOH B 60 360 130 HOH HOH . BA 4 HOH B 61 361 140 HOH HOH . BA 4 HOH B 62 362 141 HOH HOH . BA 4 HOH B 63 363 142 HOH HOH . BA 4 HOH B 64 364 147 HOH HOH . BA 4 HOH B 65 365 148 HOH HOH . BA 4 HOH B 66 366 149 HOH HOH . BA 4 HOH B 67 367 153 HOH HOH . BA 4 HOH B 68 368 157 HOH HOH . BA 4 HOH B 69 369 160 HOH HOH . BA 4 HOH B 70 370 162 HOH HOH . BA 4 HOH B 71 371 164 HOH HOH . BA 4 HOH B 72 372 165 HOH HOH . BA 4 HOH B 73 373 167 HOH HOH . BA 4 HOH B 74 374 170 HOH HOH . BA 4 HOH B 75 375 171 HOH HOH . BA 4 HOH B 76 376 174 HOH HOH . BA 4 HOH B 77 377 175 HOH HOH . BA 4 HOH B 78 378 176 HOH HOH . BA 4 HOH B 79 379 177 HOH HOH . BA 4 HOH B 80 380 180 HOH HOH . BA 4 HOH B 81 381 181 HOH HOH . BA 4 HOH B 82 382 185 HOH HOH . BA 4 HOH B 83 383 189 HOH HOH . BA 4 HOH B 84 384 198 HOH HOH . BA 4 HOH B 85 385 199 HOH HOH . BA 4 HOH B 86 386 202 HOH HOH . BA 4 HOH B 87 387 203 HOH HOH . BA 4 HOH B 88 388 204 HOH HOH . BA 4 HOH B 89 389 206 HOH HOH . BA 4 HOH B 90 390 207 HOH HOH . BA 4 HOH B 91 391 210 HOH HOH . BA 4 HOH B 92 392 214 HOH HOH . BA 4 HOH B 93 393 215 HOH HOH . BA 4 HOH B 94 394 218 HOH HOH . BA 4 HOH B 95 395 220 HOH HOH . BA 4 HOH B 96 396 222 HOH HOH . BA 4 HOH B 97 397 223 HOH HOH . BA 4 HOH B 98 398 224 HOH HOH . BA 4 HOH B 99 399 225 HOH HOH . BA 4 HOH B 100 400 227 HOH HOH . BA 4 HOH B 101 401 230 HOH HOH . BA 4 HOH B 102 402 234 HOH HOH . BA 4 HOH B 103 403 236 HOH HOH . BA 4 HOH B 104 404 237 HOH HOH . BA 4 HOH B 105 405 240 HOH HOH . BA 4 HOH B 106 406 241 HOH HOH . BA 4 HOH B 107 407 242 HOH HOH . BA 4 HOH B 108 408 245 HOH HOH . BA 4 HOH B 109 409 247 HOH HOH . BA 4 HOH B 110 410 252 HOH HOH . BA 4 HOH B 111 411 254 HOH HOH . BA 4 HOH B 112 412 255 HOH HOH . BA 4 HOH B 113 413 256 HOH HOH . BA 4 HOH B 114 414 258 HOH HOH . BA 4 HOH B 115 415 259 HOH HOH . BA 4 HOH B 116 416 260 HOH HOH . BA 4 HOH B 117 417 261 HOH HOH . BA 4 HOH B 118 418 263 HOH HOH . BA 4 HOH B 119 419 264 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol I _atom_site.label_atom_id I _atom_site.label_comp_id IOD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id V _atom_site.label_entity_id 2 _atom_site.Cartn_x 10.49 _atom_site.Cartn_y 34.561 _atom_site.Cartn_z 58.974 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 33.16 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id I _atom_site.auth_comp_id IOD _atom_site.auth_seq_id 296 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 356 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #