data_3V3V
#
_model_server_result.job_id            xSkTEWgxOnAPqmW4JgRxpg 
_model_server_result.datetime_utc      '2024-11-01 03:36:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3v3v 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":401}' 
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_entry.id    3V3V 
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_exptl.entry_id    3V3V 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              318.235 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3,5,6,7-TETRAHYDROXY-2-(3,4-DIHYDROXYPHENYL)-4H-CHROMEN-4-ONE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3V3V 
_cell.length_a            172.37 
_cell.length_b            172.37 
_cell.length_c            86.04 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3V3V 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        97 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 4 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA tetrameric 4 software_defined_assembly 2 
PISA hexadecameric 16 software_defined_assembly 3 
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loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M 1 1 
A,B,C,D,E,F,G,H,I,J,K,L,M 2 1,2 
A,B,C,D,E,F,G,H,I,J,K,L,M 3 1,3,4,5,6,7,2,8 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
3 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
4 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 
5 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 
6 'crystal symmetry operation' 5_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
7 'crystal symmetry operation' 6_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
8 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C15 H10 O8' 
_chem_comp.formula_weight    318.235 
_chem_comp.id                MYU 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3,5,6,7-TETRAHYDROXY-2-(3,4-DIHYDROXYPHENYL)-4H-CHROMEN-4-ONE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     2-(3,4-DIHYDROXYPHENYL)-3,5,6,7-TETRAHYDROXY-4H-1-BENZOPYRAN-4-ONE;2-(3,4-DIHYDROXYPHENYL)-4H-CHROMENE-3,5,6,7-TETRAOL;QUERCETAGETIN 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 C1 MYU doub 237 n y 
C2 C3 MYU sing 238 n y 
O18 C3 MYU sing 239 n n 
C1 C6 MYU sing 240 n y 
O19 C12 MYU sing 241 n n 
C3 C4 MYU doub 242 n y 
C12 C7 MYU doub 243 n y 
C12 C11 MYU sing 244 n y 
C6 C7 MYU sing 245 n y 
C6 C5 MYU doub 246 n y 
O20 C11 MYU doub 247 n n 
C4 C5 MYU sing 248 n y 
C4 O17 MYU sing 249 n n 
C7 O8 MYU sing 250 n y 
C11 C10 MYU sing 251 n y 
O8 C9 MYU sing 252 n y 
C10 C9 MYU doub 253 n y 
C10 C13 MYU sing 254 n y 
O21 C13 MYU sing 255 n n 
C9 C16 MYU sing 256 n y 
C13 C14 MYU doub 257 n y 
C16 C15 MYU doub 258 n y 
C14 C15 MYU sing 259 n y 
C14 O23 MYU sing 260 n n 
C15 O22 MYU sing 261 n n 
O19 HO19 MYU sing 262 n n 
O21 HO21 MYU sing 263 n n 
C16 H16 MYU sing 264 n n 
O22 HO22 MYU sing 265 n n 
O23 HO23 MYU sing 266 n n 
C5 H5 MYU sing 267 n n 
O17 HO17 MYU sing 268 n n 
O18 HO18 MYU sing 269 n n 
C2 H2 MYU sing 270 n n 
C1 H1 MYU sing 271 n n 
#
_atom_sites.entry_id                     3V3V 
_atom_sites.fract_transf_matrix[1][1]    0.005801 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005801 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011623 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 MYU A 1 401 1 MYU QUE . 
D 4 SO4 A 1 402 1 SO4 SO4 . 
E 4 SO4 A 1 403 2 SO4 SO4 . 
F 4 SO4 A 1 404 4 SO4 SO4 . 
G 4 SO4 A 1 405 6 SO4 SO4 . 
H 4 SO4 A 1 406 1 SO4 SO4 . 
I 4 SO4 A 1 407 2 SO4 SO4 . 
J 5 CL A 1 408 1 CL CL . 
K 4 SO4 B 1 201 3 SO4 SO4 . 
L 6 HOH A 1 501 2 HOH HOH . 
L 6 HOH A 2 502 3 HOH HOH . 
L 6 HOH A 3 503 4 HOH HOH . 
L 6 HOH A 4 504 5 HOH HOH . 
L 6 HOH A 5 505 8 HOH HOH . 
L 6 HOH A 6 506 9 HOH HOH . 
L 6 HOH A 7 507 10 HOH HOH . 
L 6 HOH A 8 508 12 HOH HOH . 
L 6 HOH A 9 509 13 HOH HOH . 
L 6 HOH A 10 510 15 HOH HOH . 
L 6 HOH A 11 511 16 HOH HOH . 
L 6 HOH A 12 512 17 HOH HOH . 
L 6 HOH A 13 513 18 HOH HOH . 
L 6 HOH A 14 514 19 HOH HOH . 
L 6 HOH A 15 515 20 HOH HOH . 
L 6 HOH A 16 516 21 HOH HOH . 
L 6 HOH A 17 517 22 HOH HOH . 
L 6 HOH A 18 518 24 HOH HOH . 
L 6 HOH A 19 519 25 HOH HOH . 
L 6 HOH A 20 520 27 HOH HOH . 
L 6 HOH A 21 521 3 HOH HOH . 
L 6 HOH A 22 522 11 HOH HOH . 
L 6 HOH A 23 523 20 HOH HOH . 
M 6 HOH B 1 301 6 HOH HOH . 
M 6 HOH B 2 302 7 HOH HOH . 
M 6 HOH B 3 303 11 HOH HOH . 
M 6 HOH B 4 304 26 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O20 MYU . . . C 3 33.982 45.174 5.698 1 63.91 ? O20 MYU 401 A 1 
HETATM 2 C C11 MYU . . . C 3 33.046 44.71 5.041 1 65.87 ? C11 MYU 401 A 1 
HETATM 3 C C12 MYU . . . C 3 31.947 45.523 4.774 1 66.92 ? C12 MYU 401 A 1 
HETATM 4 O O19 MYU . . . C 3 31.989 46.791 5.291 1 66.99 ? O19 MYU 401 A 1 
HETATM 5 C C10 MYU . . . C 3 33.038 43.388 4.538 1 66.19 ? C10 MYU 401 A 1 
HETATM 6 C C13 MYU . . . C 3 34.074 42.448 4.765 1 66.91 ? C13 MYU 401 A 1 
HETATM 7 O O21 MYU . . . C 3 35.176 42.807 5.502 1 65.75 ? O21 MYU 401 A 1 
HETATM 8 C C9 MYU . . . C 3 31.933 42.935 3.783 1 66.17 ? C9 MYU 401 A 1 
HETATM 9 C C16 MYU . . . C 3 31.868 41.628 3.268 1 66 ? C16 MYU 401 A 1 
HETATM 10 C C15 MYU . . . C 3 32.902 40.723 3.493 1 66.33 ? C15 MYU 401 A 1 
HETATM 11 O O22 MYU . . . C 3 32.895 39.442 3.018 1 66.21 ? O22 MYU 401 A 1 
HETATM 12 C C14 MYU . . . C 3 34.006 41.136 4.242 1 67.36 ? C14 MYU 401 A 1 
HETATM 13 O O23 MYU . . . C 3 35.03 40.239 4.461 1 67.93 ? O23 MYU 401 A 1 
HETATM 14 O O8 MYU . . . C 3 30.88 43.795 3.54 1 67.08 ? O8 MYU 401 A 1 
HETATM 15 C C7 MYU . . . C 3 30.846 45.097 3.993 1 67.18 ? C7 MYU 401 A 1 
HETATM 16 C C6 MYU . . . C 3 29.629 45.782 3.775 1 66.84 ? C6 MYU 401 A 1 
HETATM 17 C C5 MYU . . . C 3 29.357 46.935 4.511 1 67.25 ? C5 MYU 401 A 1 
HETATM 18 C C4 MYU . . . C 3 28.151 47.592 4.346 1 67.88 ? C4 MYU 401 A 1 
HETATM 19 O O17 MYU . . . C 3 27.848 48.727 5.025 1 67.36 ? O17 MYU 401 A 1 
HETATM 20 C C3 MYU . . . C 3 27.192 47.104 3.465 1 68.52 ? C3 MYU 401 A 1 
HETATM 21 O O18 MYU . . . C 3 26.051 47.85 3.392 1 70.35 ? O18 MYU 401 A 1 
HETATM 22 C C2 MYU . . . C 3 27.416 45.934 2.726 1 66.96 ? C2 MYU 401 A 1 
HETATM 23 C C1 MYU . . . C 3 28.636 45.277 2.906 1 66.65 ? C1 MYU 401 A 1 
#
_model_server_stats.io_time_ms              5 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           247 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           23 
#