data_3V3X
#
_model_server_result.job_id            zeq3dXa4VzPQgDiKoQySJA 
_model_server_result.datetime_utc      '2024-10-12 09:21:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3v3x 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":281}' 
#
_entry.id    3V3X 
#
_exptl.entry_id    3V3X 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              264.385 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate' 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          126.37 
_cell.angle_gamma         90 
_cell.entry_id            3V3X 
_cell.length_a            105.248 
_cell.length_b            35.747 
_cell.length_c            86.989 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3V3X 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,K,L,P,R 1 1 
B,D,G,H,I,J,M,N,O,Q,S 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 H N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 8 A CYS 8 1_555 E S1 MTN . A MTN 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
covale ? covale2 B SG CYS 8 B CYS 8 1_555 G S1 MTN . B MTN 81 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.079 ? 
covale ? covale3 B SG CYS 8 B CYS 8 1_555 G S1 MTN . B MTN 81 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.008 ? 
covale ? covale4 B SG CYS 28 B CYS 28 1_555 H S1 MTN . B MTN 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
covale ? covale5 C SG CYS 8 C CYS 8 1_555 K S1 MTN . C MTN 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? 
covale ? covale6 C SG CYS 28 C CYS 28 1_555 L S1 MTN . C MTN 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? 
covale ? covale7 D SG CYS 8 D CYS 8 1_555 M S1 MTN . D MTN 81 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.993 ? 
covale ? covale8 D SG CYS 8 D CYS 8 1_555 M S1 MTN . D MTN 81 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.045 ? 
covale ? covale9 D SG CYS 28 D CYS 28 1_555 N S1 MTN . D MTN 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
#
_chem_comp.formula           'C10 H18 N O3 S2' 
_chem_comp.formula_weight    264.385 
_chem_comp.id                MTN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     MTSL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 N1 MTN sing 274 n n 
N1 C1 MTN sing 275 n n 
N1 C5 MTN sing 276 n n 
C1 C2 MTN sing 277 n n 
C1 C8 MTN sing 278 n n 
C1 C9 MTN sing 279 n n 
C2 C3 MTN doub 280 n n 
C2 H2 MTN sing 281 n n 
C3 C4 MTN sing 282 n n 
C3 C5 MTN sing 283 n n 
C4 S1 MTN sing 284 n n 
C4 H41 MTN sing 285 n n 
C4 H42 MTN sing 286 n n 
C5 C6 MTN sing 287 n n 
C5 C7 MTN sing 288 n n 
C6 H61 MTN sing 289 n n 
C6 H62 MTN sing 290 n n 
C6 H63 MTN sing 291 n n 
C7 H71 MTN sing 292 n n 
C7 H72 MTN sing 293 n n 
C7 H73 MTN sing 294 n n 
C8 H81 MTN sing 295 n n 
C8 H82 MTN sing 296 n n 
C8 H83 MTN sing 297 n n 
C9 H91 MTN sing 298 n n 
C9 H92 MTN sing 299 n n 
C9 H93 MTN sing 300 n n 
S1 S2 MTN sing 301 n n 
S2 O2 MTN doub 302 n n 
S2 O3 MTN doub 303 n n 
S2 C12 MTN sing 304 n n 
C12 H4 MTN sing 305 n n 
C12 H1 MTN sing 306 n n 
C12 H3 MTN sing 307 n n 
#
_atom_sites.entry_id                     3V3X 
_atom_sites.fract_transf_matrix[1][1]    0.009501 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006996 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.027974 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014276 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 MTN A 1 81 81 MTN MTN . 
F 3 2PE A 1 57 1 2PE 2PE . 
G 2 MTN B 1 81 81 MTN MTN . 
H 2 MTN B 1 281 281 MTN MTN . 
I 4 GOL B 1 57 1 GOL GOL . 
J 5 ACT B 1 58 1 ACT ACT . 
K 2 MTN C 1 81 81 MTN MTN . 
L 2 MTN C 1 281 281 MTN MTN . 
M 2 MTN D 1 81 81 MTN MTN . 
N 2 MTN D 1 281 281 MTN MTN . 
O 5 ACT D 1 57 1 ACT ACT . 
P 6 HOH A 1 58 2 HOH HOH . 
P 6 HOH A 2 59 9 HOH HOH . 
P 6 HOH A 3 60 60 HOH HOH . 
P 6 HOH A 4 61 61 HOH HOH . 
P 6 HOH A 5 62 13 HOH HOH . 
P 6 HOH A 6 63 17 HOH HOH . 
P 6 HOH A 7 64 19 HOH HOH . 
P 6 HOH A 8 65 65 HOH HOH . 
P 6 HOH A 9 66 27 HOH HOH . 
P 6 HOH A 10 67 32 HOH HOH . 
P 6 HOH A 11 68 36 HOH HOH . 
P 6 HOH A 12 69 38 HOH HOH . 
P 6 HOH A 13 70 45 HOH HOH . 
P 6 HOH A 14 71 53 HOH HOH . 
P 6 HOH A 15 72 57 HOH HOH . 
P 6 HOH A 16 89 89 HOH HOH . 
P 6 HOH A 17 99 99 HOH HOH . 
P 6 HOH A 18 100 100 HOH HOH . 
P 6 HOH A 19 101 101 HOH HOH . 
P 6 HOH A 20 107 107 HOH HOH . 
P 6 HOH A 21 119 119 HOH HOH . 
P 6 HOH A 22 124 124 HOH HOH . 
P 6 HOH A 23 125 125 HOH HOH . 
P 6 HOH A 24 127 127 HOH HOH . 
P 6 HOH A 25 128 128 HOH HOH . 
P 6 HOH A 26 129 129 HOH HOH . 
Q 6 HOH B 1 59 59 HOH HOH . 
Q 6 HOH B 2 60 3 HOH HOH . 
Q 6 HOH B 3 61 5 HOH HOH . 
Q 6 HOH B 4 62 6 HOH HOH . 
Q 6 HOH B 5 63 7 HOH HOH . 
Q 6 HOH B 6 64 8 HOH HOH . 
Q 6 HOH B 7 65 12 HOH HOH . 
Q 6 HOH B 8 66 66 HOH HOH . 
Q 6 HOH B 9 67 14 HOH HOH . 
Q 6 HOH B 10 68 68 HOH HOH . 
Q 6 HOH B 11 69 15 HOH HOH . 
Q 6 HOH B 12 70 22 HOH HOH . 
Q 6 HOH B 13 71 29 HOH HOH . 
Q 6 HOH B 14 72 72 HOH HOH . 
Q 6 HOH B 15 73 30 HOH HOH . 
Q 6 HOH B 16 74 74 HOH HOH . 
Q 6 HOH B 17 75 31 HOH HOH . 
Q 6 HOH B 18 76 33 HOH HOH . 
Q 6 HOH B 19 77 77 HOH HOH . 
Q 6 HOH B 20 78 34 HOH HOH . 
Q 6 HOH B 21 79 79 HOH HOH . 
Q 6 HOH B 22 80 35 HOH HOH . 
Q 6 HOH B 23 82 40 HOH HOH . 
Q 6 HOH B 24 83 48 HOH HOH . 
Q 6 HOH B 25 84 84 HOH HOH . 
Q 6 HOH B 26 85 51 HOH HOH . 
Q 6 HOH B 27 86 52 HOH HOH . 
Q 6 HOH B 28 87 54 HOH HOH . 
Q 6 HOH B 29 88 55 HOH HOH . 
Q 6 HOH B 30 93 93 HOH HOH . 
Q 6 HOH B 31 94 94 HOH HOH . 
Q 6 HOH B 32 95 95 HOH HOH . 
Q 6 HOH B 33 96 96 HOH HOH . 
Q 6 HOH B 34 98 98 HOH HOH . 
Q 6 HOH B 35 103 103 HOH HOH . 
Q 6 HOH B 36 106 106 HOH HOH . 
Q 6 HOH B 37 115 115 HOH HOH . 
Q 6 HOH B 38 120 120 HOH HOH . 
R 6 HOH C 1 57 10 HOH HOH . 
R 6 HOH C 2 58 16 HOH HOH . 
R 6 HOH C 3 59 20 HOH HOH . 
R 6 HOH C 4 60 24 HOH HOH . 
R 6 HOH C 5 61 28 HOH HOH . 
R 6 HOH C 6 62 47 HOH HOH . 
R 6 HOH C 7 63 49 HOH HOH . 
R 6 HOH C 8 64 81 HOH HOH . 
R 6 HOH C 9 67 67 HOH HOH . 
R 6 HOH C 10 70 70 HOH HOH . 
R 6 HOH C 11 71 71 HOH HOH . 
R 6 HOH C 12 73 73 HOH HOH . 
R 6 HOH C 13 75 75 HOH HOH . 
R 6 HOH C 14 80 80 HOH HOH . 
R 6 HOH C 15 82 82 HOH HOH . 
R 6 HOH C 16 83 83 HOH HOH . 
R 6 HOH C 17 90 90 HOH HOH . 
R 6 HOH C 18 97 97 HOH HOH . 
R 6 HOH C 19 108 108 HOH HOH . 
R 6 HOH C 20 109 109 HOH HOH . 
R 6 HOH C 21 110 110 HOH HOH . 
R 6 HOH C 22 121 121 HOH HOH . 
R 6 HOH C 23 122 122 HOH HOH . 
R 6 HOH C 24 126 126 HOH HOH . 
S 6 HOH D 1 58 58 HOH HOH . 
S 6 HOH D 2 59 1 HOH HOH . 
S 6 HOH D 3 60 4 HOH HOH . 
S 6 HOH D 4 61 11 HOH HOH . 
S 6 HOH D 5 62 62 HOH HOH . 
S 6 HOH D 6 63 63 HOH HOH . 
S 6 HOH D 7 64 64 HOH HOH . 
S 6 HOH D 8 65 18 HOH HOH . 
S 6 HOH D 9 66 21 HOH HOH . 
S 6 HOH D 10 67 23 HOH HOH . 
S 6 HOH D 11 68 25 HOH HOH . 
S 6 HOH D 12 69 69 HOH HOH . 
S 6 HOH D 13 70 26 HOH HOH . 
S 6 HOH D 14 71 37 HOH HOH . 
S 6 HOH D 15 72 39 HOH HOH . 
S 6 HOH D 16 73 41 HOH HOH . 
S 6 HOH D 17 74 42 HOH HOH . 
S 6 HOH D 18 75 43 HOH HOH . 
S 6 HOH D 19 76 76 HOH HOH . 
S 6 HOH D 20 77 44 HOH HOH . 
S 6 HOH D 21 78 78 HOH HOH . 
S 6 HOH D 22 79 46 HOH HOH . 
S 6 HOH D 23 80 50 HOH HOH . 
S 6 HOH D 24 82 56 HOH HOH . 
S 6 HOH D 25 85 85 HOH HOH . 
S 6 HOH D 26 86 86 HOH HOH . 
S 6 HOH D 27 87 87 HOH HOH . 
S 6 HOH D 28 88 88 HOH HOH . 
S 6 HOH D 29 91 91 HOH HOH . 
S 6 HOH D 30 92 92 HOH HOH . 
S 6 HOH D 31 102 102 HOH HOH . 
S 6 HOH D 32 104 104 HOH HOH . 
S 6 HOH D 33 105 105 HOH HOH . 
S 6 HOH D 34 111 111 HOH HOH . 
S 6 HOH D 35 112 112 HOH HOH . 
S 6 HOH D 36 113 113 HOH HOH . 
S 6 HOH D 37 114 114 HOH HOH . 
S 6 HOH D 38 116 116 HOH HOH . 
S 6 HOH D 39 117 117 HOH HOH . 
S 6 HOH D 40 118 118 HOH HOH . 
S 6 HOH D 41 123 123 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 MTN . . . N 2 32.614 42.584 26.216 1 67.06 ? O1 MTN 281 D 1 
HETATM 2 N N1 MTN . . . N 2 31.884 41.907 26.946 1 66.14 ? N1 MTN 281 D 1 
HETATM 3 C C1 MTN . . . N 2 30.662 42.395 27.606 1 64.87 ? C1 MTN 281 D 1 
HETATM 4 C C2 MTN . . . N 2 30.216 41.167 28.391 1 60.39 ? C2 MTN 281 D 1 
HETATM 5 C C3 MTN . . . N 2 31.044 40.115 28.199 1 57.41 ? C3 MTN 281 D 1 
HETATM 6 C C4 MTN . . . N 2 30.862 38.745 28.863 1 52.4 ? C4 MTN 281 D 1 
HETATM 7 S S1 MTN . . . N 2 31.278 38.864 30.605 1 44.95 ? S1 MTN 281 D 1 
HETATM 8 C C5 MTN . . . N 2 32.169 40.508 27.264 1 59.45 ? C5 MTN 281 D 1 
HETATM 9 C C6 MTN . . . N 2 32.109 39.629 26.023 1 53.52 ? C6 MTN 281 D 1 
HETATM 10 C C7 MTN . . . N 2 33.514 40.43 27.966 1 58.6 ? C7 MTN 281 D 1 
HETATM 11 C C8 MTN . . . N 2 30.933 43.612 28.497 1 63.76 ? C8 MTN 281 D 1 
HETATM 12 C C9 MTN . . . N 2 29.549 42.694 26.599 1 68.64 ? C9 MTN 281 D 1 
HETATM 13 H H2 MTN . . . N 2 29.332 41.135 29.005 1 58.91 ? H2 MTN 281 D 1 
HETATM 14 H H41 MTN . . . N 2 31.505 38.002 28.386 1 51.67 ? H41 MTN 281 D 1 
HETATM 15 H H42 MTN . . . N 2 29.826 38.418 28.753 1 51.65 ? H42 MTN 281 D 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           318 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           15 
#