data_3V3Y # _model_server_result.job_id eaf3zLYix7wzqjojek3goA _model_server_result.datetime_utc '2024-11-05 08:10:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3v3y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":704}' # _entry.id 3V3Y # _exptl.entry_id 3V3Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 229.402 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'LAURYL DIMETHYLAMINE-N-OXIDE' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3V3Y _cell.length_a 139.75 _cell.length_b 139.75 _cell.length_c 185.604 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3V3Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 S N N ? 4 T N N ? 4 U N N ? 4 V N N ? 4 W N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B NE2 HIS 190 L HIS 190 1_555 P FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc2 B NE2 HIS 230 L HIS 230 1_555 P FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc3 C NE2 HIS 219 M HIS 219 1_555 P FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc4 C OE2 GLU 234 M GLU 234 1_555 P FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc5 C OE1 GLU 234 M GLU 234 1_555 P FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc6 C NE2 HIS 266 M HIS 266 1_555 P FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? # _chem_comp.formula 'C14 H31 N O' _chem_comp.formula_weight 229.402 _chem_comp.id LDA _chem_comp.mon_nstd_flag . _chem_comp.name 'LAURYL DIMETHYLAMINE-N-OXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 O1 LDA sing 481 n n N1 CM1 LDA sing 482 n n N1 CM2 LDA sing 483 n n N1 C1 LDA sing 484 n n CM1 HM11 LDA sing 485 n n CM1 HM12 LDA sing 486 n n CM1 HM13 LDA sing 487 n n CM2 HM21 LDA sing 488 n n CM2 HM22 LDA sing 489 n n CM2 HM23 LDA sing 490 n n C1 C2 LDA sing 491 n n C1 H11 LDA sing 492 n n C1 H12 LDA sing 493 n n C2 C3 LDA sing 494 n n C2 H21 LDA sing 495 n n C2 H22 LDA sing 496 n n C3 C4 LDA sing 497 n n C3 H31 LDA sing 498 n n C3 H32 LDA sing 499 n n C4 C5 LDA sing 500 n n C4 H41 LDA sing 501 n n C4 H42 LDA sing 502 n n C5 C6 LDA sing 503 n n C5 H51 LDA sing 504 n n C5 H52 LDA sing 505 n n C6 C7 LDA sing 506 n n C6 H61 LDA sing 507 n n C6 H62 LDA sing 508 n n C7 C8 LDA sing 509 n n C7 H71 LDA sing 510 n n C7 H72 LDA sing 511 n n C8 C9 LDA sing 512 n n C8 H81 LDA sing 513 n n C8 H82 LDA sing 514 n n C9 C10 LDA sing 515 n n C9 H91 LDA sing 516 n n C9 H92 LDA sing 517 n n C10 C11 LDA sing 518 n n C10 H101 LDA sing 519 n n C10 H102 LDA sing 520 n n C11 C12 LDA sing 521 n n C11 H111 LDA sing 522 n n C11 H112 LDA sing 523 n n C12 H121 LDA sing 524 n n C12 H122 LDA sing 525 n n C12 H123 LDA sing 526 n n # _atom_sites.entry_id 3V3Y _atom_sites.fract_transf_matrix[1][1] 0.007156 _atom_sites.fract_transf_matrix[1][2] 0.004131 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008263 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005388 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 LDA H 1 702 702 LDA LDA . E 4 LDA H 1 704 704 LDA LDA . F 4 LDA H 1 709 709 LDA LDA . G 5 BCL L 1 302 302 BCL BCL . H 6 BPH L 1 402 402 BPH BPH . I 7 U10 L 1 502 502 U10 U10 . J 8 DIO L 1 900 900 DIO DIO . K 8 DIO L 1 901 901 DIO DIO . L 5 BCL M 1 303 301 BCL BCL . M 5 BCL M 1 304 303 BCL BCL . N 5 BCL M 1 305 304 BCL BCL . O 6 BPH M 1 401 401 BPH BPH . P 9 FE M 1 500 500 FE FE . Q 7 U10 M 1 501 501 U10 U10 . R 10 SPN M 1 600 600 SPN SPN . S 4 LDA M 1 701 701 LDA LDA . T 4 LDA M 1 703 703 LDA LDA . U 4 LDA M 1 705 705 LDA LDA . V 4 LDA M 1 707 707 LDA LDA . W 4 LDA M 1 708 708 LDA LDA . X 11 PO4 M 1 800 800 PO4 PO4 . Y 11 PO4 M 1 801 801 PO4 PO4 . Z 11 PO4 M 1 803 803 PO4 PO4 . AA 8 DIO M 1 902 902 DIO DIO . BA 12 CL M 1 306 1 CL CL . CA 13 HOH H 1 7 7 HOH HOH . CA 13 HOH H 2 251 10 HOH HOH . CA 13 HOH H 3 252 11 HOH HOH . CA 13 HOH H 4 253 13 HOH HOH . CA 13 HOH H 5 254 14 HOH HOH . CA 13 HOH H 6 255 16 HOH HOH . CA 13 HOH H 7 256 17 HOH HOH . CA 13 HOH H 8 257 20 HOH HOH . CA 13 HOH H 9 258 23 HOH HOH . CA 13 HOH H 10 259 27 HOH HOH . CA 13 HOH H 11 260 28 HOH HOH . CA 13 HOH H 12 261 29 HOH HOH . CA 13 HOH H 13 262 30 HOH HOH . CA 13 HOH H 14 263 31 HOH HOH . CA 13 HOH H 15 264 32 HOH HOH . CA 13 HOH H 16 265 33 HOH HOH . CA 13 HOH H 17 266 34 HOH HOH . CA 13 HOH H 18 267 38 HOH HOH . CA 13 HOH H 19 268 42 HOH HOH . CA 13 HOH H 20 269 45 HOH HOH . CA 13 HOH H 21 270 46 HOH HOH . CA 13 HOH H 22 271 47 HOH HOH . CA 13 HOH H 23 272 48 HOH HOH . CA 13 HOH H 24 273 49 HOH HOH . CA 13 HOH H 25 274 50 HOH HOH . CA 13 HOH H 26 275 52 HOH HOH . CA 13 HOH H 27 276 53 HOH HOH . CA 13 HOH H 28 277 55 HOH HOH . CA 13 HOH H 29 278 57 HOH HOH . CA 13 HOH H 30 279 58 HOH HOH . CA 13 HOH H 31 280 59 HOH HOH . CA 13 HOH H 32 281 60 HOH HOH . CA 13 HOH H 33 282 61 HOH HOH . CA 13 HOH H 34 283 81 HOH HOH . CA 13 HOH H 35 284 82 HOH HOH . CA 13 HOH H 36 285 83 HOH HOH . CA 13 HOH H 37 286 87 HOH HOH . CA 13 HOH H 38 287 89 HOH HOH . CA 13 HOH H 39 288 90 HOH HOH . CA 13 HOH H 40 289 93 HOH HOH . DA 13 HOH L 1 282 1 HOH HOH . DA 13 HOH L 2 283 5 HOH HOH . DA 13 HOH L 3 284 6 HOH HOH . DA 13 HOH L 4 285 18 HOH HOH . DA 13 HOH L 5 286 19 HOH HOH . DA 13 HOH L 6 287 21 HOH HOH . DA 13 HOH L 7 288 22 HOH HOH . DA 13 HOH L 8 289 24 HOH HOH . DA 13 HOH L 9 290 26 HOH HOH . DA 13 HOH L 10 291 36 HOH HOH . DA 13 HOH L 11 292 37 HOH HOH . DA 13 HOH L 12 293 39 HOH HOH . DA 13 HOH L 13 294 43 HOH HOH . DA 13 HOH L 14 295 44 HOH HOH . DA 13 HOH L 15 296 54 HOH HOH . DA 13 HOH L 16 297 62 HOH HOH . DA 13 HOH L 17 298 63 HOH HOH . DA 13 HOH L 18 299 66 HOH HOH . DA 13 HOH L 19 300 74 HOH HOH . DA 13 HOH L 20 301 88 HOH HOH . DA 13 HOH L 21 303 91 HOH HOH . EA 13 HOH M 1 307 3 HOH HOH . EA 13 HOH M 2 308 4 HOH HOH . EA 13 HOH M 3 309 8 HOH HOH . EA 13 HOH M 4 310 9 HOH HOH . EA 13 HOH M 5 311 12 HOH HOH . EA 13 HOH M 6 312 15 HOH HOH . EA 13 HOH M 7 313 25 HOH HOH . EA 13 HOH M 8 314 35 HOH HOH . EA 13 HOH M 9 315 40 HOH HOH . EA 13 HOH M 10 316 41 HOH HOH . EA 13 HOH M 11 317 51 HOH HOH . EA 13 HOH M 12 318 56 HOH HOH . EA 13 HOH M 13 319 64 HOH HOH . EA 13 HOH M 14 320 65 HOH HOH . EA 13 HOH M 15 321 67 HOH HOH . EA 13 HOH M 16 322 68 HOH HOH . EA 13 HOH M 17 323 69 HOH HOH . EA 13 HOH M 18 324 70 HOH HOH . EA 13 HOH M 19 325 71 HOH HOH . EA 13 HOH M 20 326 72 HOH HOH . EA 13 HOH M 21 327 73 HOH HOH . EA 13 HOH M 22 328 75 HOH HOH . EA 13 HOH M 23 329 76 HOH HOH . EA 13 HOH M 24 330 77 HOH HOH . EA 13 HOH M 25 331 78 HOH HOH . EA 13 HOH M 26 332 79 HOH HOH . EA 13 HOH M 27 333 80 HOH HOH . EA 13 HOH M 28 334 84 HOH HOH . EA 13 HOH M 29 335 85 HOH HOH . EA 13 HOH M 30 336 86 HOH HOH . EA 13 HOH M 31 337 92 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 LDA . . . E 4 34.077 -32.959 19.452 1 71.31 ? N1 LDA 704 H 1 HETATM 2 O O1 LDA . . . E 4 33.718 -34.013 18.861 1 57.46 ? O1 LDA 704 H 1 HETATM 3 C CM1 LDA . . . E 4 33.075 -31.925 19.105 1 75.5 ? CM1 LDA 704 H 1 HETATM 4 C CM2 LDA . . . E 4 34.097 -33.151 20.92 1 54.85 ? CM2 LDA 704 H 1 HETATM 5 C C1 LDA . . . E 4 35.418 -32.586 18.991 1 50.6 ? C1 LDA 704 H 1 HETATM 6 C C2 LDA . . . E 4 35.779 -31.183 19.496 1 49.92 ? C2 LDA 704 H 1 HETATM 7 C C3 LDA . . . E 4 36.991 -30.594 18.765 1 50.22 ? C3 LDA 704 H 1 HETATM 8 C C4 LDA . . . E 4 37.83 -29.64 19.628 1 49.3 ? C4 LDA 704 H 1 HETATM 9 C C5 LDA . . . E 4 37.787 -28.215 19.067 1 44.4 ? C5 LDA 704 H 1 HETATM 10 C C6 LDA . . . E 4 38.816 -27.287 19.702 1 40.15 ? C6 LDA 704 H 1 HETATM 11 C C7 LDA . . . E 4 38.171 -26.197 20.55 1 43.31 ? C7 LDA 704 H 1 HETATM 12 C C8 LDA . . . E 4 38.712 -24.832 20.126 1 48.28 ? C8 LDA 704 H 1 HETATM 13 C C9 LDA . . . E 4 38.587 -23.771 21.219 1 56.86 ? C9 LDA 704 H 1 HETATM 14 C C10 LDA . . . E 4 39.906 -23.624 21.983 1 63.68 ? C10 LDA 704 H 1 HETATM 15 C C11 LDA . . . E 4 39.887 -22.498 23.021 1 73.82 ? C11 LDA 704 H 1 HETATM 16 C C12 LDA . . . E 4 41.292 -22.152 23.52 1 69.37 ? C12 LDA 704 H 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 16 #