data_3V3Y
#
_model_server_result.job_id            Vyyh1Z_3SZVYa7JHVuGX2A 
_model_server_result.datetime_utc      '2024-11-22 11:40:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3v3y 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":900}' 
#
_entry.id    3V3Y 
#
_exptl.entry_id    3V3Y 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              88.105 
_entity.id                          8 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '1,4-DIETHYLENE DIOXIDE' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3V3Y 
_cell.length_a            139.75 
_cell.length_b            139.75 
_cell.length_c            185.604 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3V3Y 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 8 J N N 
? 8 K N N 
? 8 AA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B NE2 HIS 190 L HIS 190 1_555 P FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? 
metalc ? metalc2 B NE2 HIS 230 L HIS 230 1_555 P FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? 
metalc ? metalc3 C NE2 HIS 219 M HIS 219 1_555 P FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? 
metalc ? metalc4 C OE2 GLU 234 M GLU 234 1_555 P FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? 
metalc ? metalc5 C OE1 GLU 234 M GLU 234 1_555 P FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? 
metalc ? metalc6 C NE2 HIS 266 M HIS 266 1_555 P FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? 
#
_chem_comp.formula           'C4 H8 O2' 
_chem_comp.formula_weight    88.105 
_chem_comp.id                DIO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '1,4-DIETHYLENE DIOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C1' DIO sing 377 n n 
C1 O1 DIO sing 378 n n 
C1 H11 DIO sing 379 n n 
C1 H12 DIO sing 380 n n 
C2 C2' DIO sing 381 n n 
C2 O1 DIO sing 382 n n 
C2 H21 DIO sing 383 n n 
C2 H22 DIO sing 384 n n 
C1' O1' DIO sing 385 n n 
C1' "H1'1" DIO sing 386 n n 
C1' "H1'2" DIO sing 387 n n 
C2' O1' DIO sing 388 n n 
C2' "H2'1" DIO sing 389 n n 
C2' "H2'2" DIO sing 390 n n 
#
_atom_sites.entry_id                     3V3Y 
_atom_sites.fract_transf_matrix[1][1]    0.007156 
_atom_sites.fract_transf_matrix[1][2]    0.004131 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008263 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005388 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 LDA H 1 702 702 LDA LDA . 
E 4 LDA H 1 704 704 LDA LDA . 
F 4 LDA H 1 709 709 LDA LDA . 
G 5 BCL L 1 302 302 BCL BCL . 
H 6 BPH L 1 402 402 BPH BPH . 
I 7 U10 L 1 502 502 U10 U10 . 
J 8 DIO L 1 900 900 DIO DIO . 
K 8 DIO L 1 901 901 DIO DIO . 
L 5 BCL M 1 303 301 BCL BCL . 
M 5 BCL M 1 304 303 BCL BCL . 
N 5 BCL M 1 305 304 BCL BCL . 
O 6 BPH M 1 401 401 BPH BPH . 
P 9 FE M 1 500 500 FE FE . 
Q 7 U10 M 1 501 501 U10 U10 . 
R 10 SPN M 1 600 600 SPN SPN . 
S 4 LDA M 1 701 701 LDA LDA . 
T 4 LDA M 1 703 703 LDA LDA . 
U 4 LDA M 1 705 705 LDA LDA . 
V 4 LDA M 1 707 707 LDA LDA . 
W 4 LDA M 1 708 708 LDA LDA . 
X 11 PO4 M 1 800 800 PO4 PO4 . 
Y 11 PO4 M 1 801 801 PO4 PO4 . 
Z 11 PO4 M 1 803 803 PO4 PO4 . 
AA 8 DIO M 1 902 902 DIO DIO . 
BA 12 CL M 1 306 1 CL CL . 
CA 13 HOH H 1 7 7 HOH HOH . 
CA 13 HOH H 2 251 10 HOH HOH . 
CA 13 HOH H 3 252 11 HOH HOH . 
CA 13 HOH H 4 253 13 HOH HOH . 
CA 13 HOH H 5 254 14 HOH HOH . 
CA 13 HOH H 6 255 16 HOH HOH . 
CA 13 HOH H 7 256 17 HOH HOH . 
CA 13 HOH H 8 257 20 HOH HOH . 
CA 13 HOH H 9 258 23 HOH HOH . 
CA 13 HOH H 10 259 27 HOH HOH . 
CA 13 HOH H 11 260 28 HOH HOH . 
CA 13 HOH H 12 261 29 HOH HOH . 
CA 13 HOH H 13 262 30 HOH HOH . 
CA 13 HOH H 14 263 31 HOH HOH . 
CA 13 HOH H 15 264 32 HOH HOH . 
CA 13 HOH H 16 265 33 HOH HOH . 
CA 13 HOH H 17 266 34 HOH HOH . 
CA 13 HOH H 18 267 38 HOH HOH . 
CA 13 HOH H 19 268 42 HOH HOH . 
CA 13 HOH H 20 269 45 HOH HOH . 
CA 13 HOH H 21 270 46 HOH HOH . 
CA 13 HOH H 22 271 47 HOH HOH . 
CA 13 HOH H 23 272 48 HOH HOH . 
CA 13 HOH H 24 273 49 HOH HOH . 
CA 13 HOH H 25 274 50 HOH HOH . 
CA 13 HOH H 26 275 52 HOH HOH . 
CA 13 HOH H 27 276 53 HOH HOH . 
CA 13 HOH H 28 277 55 HOH HOH . 
CA 13 HOH H 29 278 57 HOH HOH . 
CA 13 HOH H 30 279 58 HOH HOH . 
CA 13 HOH H 31 280 59 HOH HOH . 
CA 13 HOH H 32 281 60 HOH HOH . 
CA 13 HOH H 33 282 61 HOH HOH . 
CA 13 HOH H 34 283 81 HOH HOH . 
CA 13 HOH H 35 284 82 HOH HOH . 
CA 13 HOH H 36 285 83 HOH HOH . 
CA 13 HOH H 37 286 87 HOH HOH . 
CA 13 HOH H 38 287 89 HOH HOH . 
CA 13 HOH H 39 288 90 HOH HOH . 
CA 13 HOH H 40 289 93 HOH HOH . 
DA 13 HOH L 1 282 1 HOH HOH . 
DA 13 HOH L 2 283 5 HOH HOH . 
DA 13 HOH L 3 284 6 HOH HOH . 
DA 13 HOH L 4 285 18 HOH HOH . 
DA 13 HOH L 5 286 19 HOH HOH . 
DA 13 HOH L 6 287 21 HOH HOH . 
DA 13 HOH L 7 288 22 HOH HOH . 
DA 13 HOH L 8 289 24 HOH HOH . 
DA 13 HOH L 9 290 26 HOH HOH . 
DA 13 HOH L 10 291 36 HOH HOH . 
DA 13 HOH L 11 292 37 HOH HOH . 
DA 13 HOH L 12 293 39 HOH HOH . 
DA 13 HOH L 13 294 43 HOH HOH . 
DA 13 HOH L 14 295 44 HOH HOH . 
DA 13 HOH L 15 296 54 HOH HOH . 
DA 13 HOH L 16 297 62 HOH HOH . 
DA 13 HOH L 17 298 63 HOH HOH . 
DA 13 HOH L 18 299 66 HOH HOH . 
DA 13 HOH L 19 300 74 HOH HOH . 
DA 13 HOH L 20 301 88 HOH HOH . 
DA 13 HOH L 21 303 91 HOH HOH . 
EA 13 HOH M 1 307 3 HOH HOH . 
EA 13 HOH M 2 308 4 HOH HOH . 
EA 13 HOH M 3 309 8 HOH HOH . 
EA 13 HOH M 4 310 9 HOH HOH . 
EA 13 HOH M 5 311 12 HOH HOH . 
EA 13 HOH M 6 312 15 HOH HOH . 
EA 13 HOH M 7 313 25 HOH HOH . 
EA 13 HOH M 8 314 35 HOH HOH . 
EA 13 HOH M 9 315 40 HOH HOH . 
EA 13 HOH M 10 316 41 HOH HOH . 
EA 13 HOH M 11 317 51 HOH HOH . 
EA 13 HOH M 12 318 56 HOH HOH . 
EA 13 HOH M 13 319 64 HOH HOH . 
EA 13 HOH M 14 320 65 HOH HOH . 
EA 13 HOH M 15 321 67 HOH HOH . 
EA 13 HOH M 16 322 68 HOH HOH . 
EA 13 HOH M 17 323 69 HOH HOH . 
EA 13 HOH M 18 324 70 HOH HOH . 
EA 13 HOH M 19 325 71 HOH HOH . 
EA 13 HOH M 20 326 72 HOH HOH . 
EA 13 HOH M 21 327 73 HOH HOH . 
EA 13 HOH M 22 328 75 HOH HOH . 
EA 13 HOH M 23 329 76 HOH HOH . 
EA 13 HOH M 24 330 77 HOH HOH . 
EA 13 HOH M 25 331 78 HOH HOH . 
EA 13 HOH M 26 332 79 HOH HOH . 
EA 13 HOH M 27 333 80 HOH HOH . 
EA 13 HOH M 28 334 84 HOH HOH . 
EA 13 HOH M 29 335 85 HOH HOH . 
EA 13 HOH M 30 336 86 HOH HOH . 
EA 13 HOH M 31 337 92 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 DIO . . . J 8 39.662 -35.635 -24.658 1 55.81 ? C1 DIO 900 L 1 
HETATM 2 C C2 DIO . . . J 8 41.776 -34.742 -24.989 1 53.7 ? C2 DIO 900 L 1 
HETATM 3 C C1' DIO . . . J 8 40.27 -36.798 -23.925 1 63.23 ? C1' DIO 900 L 1 
HETATM 4 C C2' DIO . . . J 8 42.392 -35.919 -24.285 1 63.98 ? C2' DIO 900 L 1 
HETATM 5 O O1 DIO . . . J 8 40.458 -34.504 -24.64 1 51.23 ? O1 DIO 900 L 1 
HETATM 6 O O1' DIO . . . J 8 41.586 -37.047 -24.28 1 70.91 ? O1' DIO 900 L 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#