data_3V3Z
#
_model_server_result.job_id            V3II5kOsI0mgcj3Xpimwzg 
_model_server_result.datetime_utc      '2024-11-05 05:45:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3v3z 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":251}' 
#
_entry.id    3V3Z 
#
_exptl.entry_id    3V3Z 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              88.105 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '1,4-DIETHYLENE DIOXIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3V3Z 
_cell.length_a            140.13 
_cell.length_b            140.13 
_cell.length_c            186.03 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3V3Z 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 I N N 
? 7 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 J K K . H K 1 1_555 A O MET 125 H MET 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.034 ? 
metalc ? metalc2 J K K . H K 1 1_555 A O ALA 128 H ALA 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? 
metalc ? metalc3 J K K . H K 1 1_555 A O PHE 131 H PHE 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.935 ? 
metalc ? metalc4 B NE2 HIS 190 L HIS 190 1_555 T FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? 
metalc ? metalc5 B NE2 HIS 230 L HIS 230 1_555 T FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? 
metalc ? metalc6 C NE2 HIS 219 M HIS 219 1_555 T FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? 
metalc ? metalc7 C OE2 GLU 234 M GLU 234 1_555 T FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? 
metalc ? metalc8 C OE1 GLU 234 M GLU 234 1_555 T FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? 
metalc ? metalc9 C NE2 HIS 266 M HIS 266 1_555 T FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? 
#
_chem_comp.formula           'C4 H8 O2' 
_chem_comp.formula_weight    88.105 
_chem_comp.id                DIO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '1,4-DIETHYLENE DIOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C1' DIO sing 377 n n 
C1 O1 DIO sing 378 n n 
C1 H11 DIO sing 379 n n 
C1 H12 DIO sing 380 n n 
C2 C2' DIO sing 381 n n 
C2 O1 DIO sing 382 n n 
C2 H21 DIO sing 383 n n 
C2 H22 DIO sing 384 n n 
C1' O1' DIO sing 385 n n 
C1' "H1'1" DIO sing 386 n n 
C1' "H1'2" DIO sing 387 n n 
C2' O1' DIO sing 388 n n 
C2' "H2'1" DIO sing 389 n n 
C2' "H2'2" DIO sing 390 n n 
#
_atom_sites.entry_id                     3V3Z 
_atom_sites.fract_transf_matrix[1][1]    0.007136 
_atom_sites.fract_transf_matrix[1][2]    0.00412 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00824 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005375 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 LDA H 1 704 704 LDA LDA . 
E 5 PO4 H 1 803 803 PO4 PO4 . 
F 5 PO4 H 1 804 804 PO4 PO4 . 
G 6 HTO H 1 2 2 HTO HTO . 
H 6 HTO H 1 3 3 HTO HTO . 
I 7 DIO H 1 251 41 DIO DIO . 
J 8 K H 1 1 1 K K . 
K 9 BCL L 1 301 301 BCL BCL . 
L 9 BCL L 1 302 302 BCL BCL . 
M 9 BCL L 1 304 304 BCL BCL . 
N 10 BPH L 1 402 402 BPH BPH . 
O 11 U10 L 1 502 502 U10 U10 . 
P 6 HTO L 1 282 1 HTO HTO . 
Q 7 DIO L 1 283 40 DIO DIO . 
R 9 BCL M 1 303 303 BCL BCL . 
S 10 BPH M 1 401 401 BPH BPH . 
T 12 FE M 1 500 500 FE FE . 
U 11 U10 M 1 501 501 U10 U10 . 
V 13 SPN M 1 600 600 SPN SPN . 
W 4 LDA M 1 701 701 LDA LDA . 
X 4 LDA M 1 702 702 LDA LDA . 
Y 4 LDA M 1 703 703 LDA LDA . 
Z 4 LDA M 1 705 705 LDA LDA . 
AA 5 PO4 M 1 800 800 PO4 PO4 . 
BA 5 PO4 M 1 801 801 PO4 PO4 . 
CA 5 PO4 M 1 802 802 PO4 PO4 . 
DA 14 CL M 1 304 1 CL CL . 
EA 15 HOH H 1 6 6 HOH HOH . 
EA 15 HOH H 2 252 19 HOH HOH . 
EA 15 HOH H 3 253 29 HOH HOH . 
EA 15 HOH H 4 254 30 HOH HOH . 
EA 15 HOH H 5 255 32 HOH HOH . 
EA 15 HOH H 6 256 33 HOH HOH . 
EA 15 HOH H 7 257 34 HOH HOH . 
EA 15 HOH H 8 258 35 HOH HOH . 
EA 15 HOH H 9 259 36 HOH HOH . 
EA 15 HOH H 10 260 38 HOH HOH . 
EA 15 HOH H 11 261 41 HOH HOH . 
EA 15 HOH H 12 262 43 HOH HOH . 
EA 15 HOH H 13 263 46 HOH HOH . 
FA 15 HOH L 1 284 1 HOH HOH . 
FA 15 HOH L 2 285 2 HOH HOH . 
FA 15 HOH L 3 286 3 HOH HOH . 
FA 15 HOH L 4 287 4 HOH HOH . 
FA 15 HOH L 5 288 5 HOH HOH . 
FA 15 HOH L 6 289 8 HOH HOH . 
FA 15 HOH L 7 290 9 HOH HOH . 
FA 15 HOH L 8 291 11 HOH HOH . 
FA 15 HOH L 9 292 15 HOH HOH . 
FA 15 HOH L 10 293 16 HOH HOH . 
FA 15 HOH L 11 294 31 HOH HOH . 
FA 15 HOH L 12 295 37 HOH HOH . 
FA 15 HOH L 13 296 39 HOH HOH . 
FA 15 HOH L 14 297 40 HOH HOH . 
FA 15 HOH L 15 298 42 HOH HOH . 
FA 15 HOH L 16 299 45 HOH HOH . 
FA 15 HOH L 17 300 47 HOH HOH . 
FA 15 HOH L 18 303 49 HOH HOH . 
FA 15 HOH L 19 305 50 HOH HOH . 
GA 15 HOH M 1 305 7 HOH HOH . 
GA 15 HOH M 2 306 10 HOH HOH . 
GA 15 HOH M 3 307 12 HOH HOH . 
GA 15 HOH M 4 308 13 HOH HOH . 
GA 15 HOH M 5 309 14 HOH HOH . 
GA 15 HOH M 6 310 18 HOH HOH . 
GA 15 HOH M 7 311 20 HOH HOH . 
GA 15 HOH M 8 312 21 HOH HOH . 
GA 15 HOH M 9 313 22 HOH HOH . 
GA 15 HOH M 10 314 23 HOH HOH . 
GA 15 HOH M 11 315 24 HOH HOH . 
GA 15 HOH M 12 316 25 HOH HOH . 
GA 15 HOH M 13 317 26 HOH HOH . 
GA 15 HOH M 14 318 27 HOH HOH . 
GA 15 HOH M 15 319 28 HOH HOH . 
GA 15 HOH M 16 320 44 HOH HOH . 
GA 15 HOH M 17 321 48 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 DIO . . . I 7 -45.288 62.49 10.39 1 84.95 ? C1 DIO 251 H 1 
HETATM 2 C C2 DIO . . . I 7 -43.446 61.351 9.336 1 85.99 ? C2 DIO 251 H 1 
HETATM 3 C C1' DIO . . . I 7 -44.386 62.925 11.528 1 84.34 ? C1' DIO 251 H 1 
HETATM 4 C C2' DIO . . . I 7 -42.532 61.78 10.472 1 85.47 ? C2' DIO 251 H 1 
HETATM 5 O O1 DIO . . . I 7 -44.463 62.352 9.228 1 86.81 ? O1 DIO 251 H 1 
HETATM 6 O O1' DIO . . . I 7 -43.305 62.001 11.656 1 84.97 ? O1' DIO 251 H 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           6 
#