data_3V3Z # _model_server_result.job_id 7742mEFkD36Fhq2fbxYWdw _model_server_result.datetime_utc '2024-11-05 05:37:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3v3z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":3}' # _entry.id 3V3Z # _exptl.entry_id 3V3Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 148.2 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description HEPTANE-1,2,3-TRIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3V3Z _cell.length_a 140.13 _cell.length_b 140.13 _cell.length_c 186.03 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3V3Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 H N N ? 6 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 J K K . H K 1 1_555 A O MET 125 H MET 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.034 ? metalc ? metalc2 J K K . H K 1 1_555 A O ALA 128 H ALA 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? metalc ? metalc3 J K K . H K 1 1_555 A O PHE 131 H PHE 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.935 ? metalc ? metalc4 B NE2 HIS 190 L HIS 190 1_555 T FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc5 B NE2 HIS 230 L HIS 230 1_555 T FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc6 C NE2 HIS 219 M HIS 219 1_555 T FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc7 C OE2 GLU 234 M GLU 234 1_555 T FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? metalc ? metalc8 C OE1 GLU 234 M GLU 234 1_555 T FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc9 C NE2 HIS 266 M HIS 266 1_555 T FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? # _chem_comp.formula 'C7 H16 O3' _chem_comp.formula_weight 148.2 _chem_comp.id HTO _chem_comp.mon_nstd_flag . _chem_comp.name HEPTANE-1,2,3-TRIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 HTO sing 460 n n C1 C2 HTO sing 461 n n C1 H11 HTO sing 462 n n C1 H12 HTO sing 463 n n O1 HO1 HTO sing 464 n n C2 O2 HTO sing 465 n n C2 C3 HTO sing 466 n n C2 H2 HTO sing 467 n n O2 HO2 HTO sing 468 n n C3 O3 HTO sing 469 n n C3 C4 HTO sing 470 n n C3 H3 HTO sing 471 n n O3 HO3 HTO sing 472 n n C4 C5 HTO sing 473 n n C4 H41 HTO sing 474 n n C4 H42 HTO sing 475 n n C5 C6 HTO sing 476 n n C5 H51 HTO sing 477 n n C5 H52 HTO sing 478 n n C6 C7 HTO sing 479 n n C6 H61 HTO sing 480 n n C6 H62 HTO sing 481 n n C7 H71 HTO sing 482 n n C7 H72 HTO sing 483 n n C7 H73 HTO sing 484 n n # _atom_sites.entry_id 3V3Z _atom_sites.fract_transf_matrix[1][1] 0.007136 _atom_sites.fract_transf_matrix[1][2] 0.00412 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00824 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005375 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 LDA H 1 704 704 LDA LDA . E 5 PO4 H 1 803 803 PO4 PO4 . F 5 PO4 H 1 804 804 PO4 PO4 . G 6 HTO H 1 2 2 HTO HTO . H 6 HTO H 1 3 3 HTO HTO . I 7 DIO H 1 251 41 DIO DIO . J 8 K H 1 1 1 K K . K 9 BCL L 1 301 301 BCL BCL . L 9 BCL L 1 302 302 BCL BCL . M 9 BCL L 1 304 304 BCL BCL . N 10 BPH L 1 402 402 BPH BPH . O 11 U10 L 1 502 502 U10 U10 . P 6 HTO L 1 282 1 HTO HTO . Q 7 DIO L 1 283 40 DIO DIO . R 9 BCL M 1 303 303 BCL BCL . S 10 BPH M 1 401 401 BPH BPH . T 12 FE M 1 500 500 FE FE . U 11 U10 M 1 501 501 U10 U10 . V 13 SPN M 1 600 600 SPN SPN . W 4 LDA M 1 701 701 LDA LDA . X 4 LDA M 1 702 702 LDA LDA . Y 4 LDA M 1 703 703 LDA LDA . Z 4 LDA M 1 705 705 LDA LDA . AA 5 PO4 M 1 800 800 PO4 PO4 . BA 5 PO4 M 1 801 801 PO4 PO4 . CA 5 PO4 M 1 802 802 PO4 PO4 . DA 14 CL M 1 304 1 CL CL . EA 15 HOH H 1 6 6 HOH HOH . EA 15 HOH H 2 252 19 HOH HOH . EA 15 HOH H 3 253 29 HOH HOH . EA 15 HOH H 4 254 30 HOH HOH . EA 15 HOH H 5 255 32 HOH HOH . EA 15 HOH H 6 256 33 HOH HOH . EA 15 HOH H 7 257 34 HOH HOH . EA 15 HOH H 8 258 35 HOH HOH . EA 15 HOH H 9 259 36 HOH HOH . EA 15 HOH H 10 260 38 HOH HOH . EA 15 HOH H 11 261 41 HOH HOH . EA 15 HOH H 12 262 43 HOH HOH . EA 15 HOH H 13 263 46 HOH HOH . FA 15 HOH L 1 284 1 HOH HOH . FA 15 HOH L 2 285 2 HOH HOH . FA 15 HOH L 3 286 3 HOH HOH . FA 15 HOH L 4 287 4 HOH HOH . FA 15 HOH L 5 288 5 HOH HOH . FA 15 HOH L 6 289 8 HOH HOH . FA 15 HOH L 7 290 9 HOH HOH . FA 15 HOH L 8 291 11 HOH HOH . FA 15 HOH L 9 292 15 HOH HOH . FA 15 HOH L 10 293 16 HOH HOH . FA 15 HOH L 11 294 31 HOH HOH . FA 15 HOH L 12 295 37 HOH HOH . FA 15 HOH L 13 296 39 HOH HOH . FA 15 HOH L 14 297 40 HOH HOH . FA 15 HOH L 15 298 42 HOH HOH . FA 15 HOH L 16 299 45 HOH HOH . FA 15 HOH L 17 300 47 HOH HOH . FA 15 HOH L 18 303 49 HOH HOH . FA 15 HOH L 19 305 50 HOH HOH . GA 15 HOH M 1 305 7 HOH HOH . GA 15 HOH M 2 306 10 HOH HOH . GA 15 HOH M 3 307 12 HOH HOH . GA 15 HOH M 4 308 13 HOH HOH . GA 15 HOH M 5 309 14 HOH HOH . GA 15 HOH M 6 310 18 HOH HOH . GA 15 HOH M 7 311 20 HOH HOH . GA 15 HOH M 8 312 21 HOH HOH . GA 15 HOH M 9 313 22 HOH HOH . GA 15 HOH M 10 314 23 HOH HOH . GA 15 HOH M 11 315 24 HOH HOH . GA 15 HOH M 12 316 25 HOH HOH . GA 15 HOH M 13 317 26 HOH HOH . GA 15 HOH M 14 318 27 HOH HOH . GA 15 HOH M 15 319 28 HOH HOH . GA 15 HOH M 16 320 44 HOH HOH . GA 15 HOH M 17 321 48 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 HTO . . . H 6 -25.939 72.102 15.355 1 114.47 ? C1 HTO 3 H 1 HETATM 2 O O1 HTO . . . H 6 -24.65 71.936 14.754 1 113.97 ? O1 HTO 3 H 1 HETATM 3 C C2 HTO . . . H 6 -26.877 70.995 14.868 1 114.84 ? C2 HTO 3 H 1 HETATM 4 O O2 HTO . . . H 6 -26.629 70.77 13.471 1 114.09 ? O2 HTO 3 H 1 HETATM 5 C C3 HTO . . . H 6 -26.745 69.668 15.64 1 114.88 ? C3 HTO 3 H 1 HETATM 6 O O3 HTO . . . H 6 -27.711 68.75 15.116 1 113.86 ? O3 HTO 3 H 1 HETATM 7 C C4 HTO . . . H 6 -26.952 69.785 17.16 1 115.12 ? C4 HTO 3 H 1 HETATM 8 C C5 HTO . . . H 6 -26.291 68.643 17.939 1 114.86 ? C5 HTO 3 H 1 HETATM 9 C C6 HTO . . . H 6 -26.46 68.807 19.451 1 114.34 ? C6 HTO 3 H 1 HETATM 10 C C7 HTO . . . H 6 -25.138 69.077 20.142 1 113.57 ? C7 HTO 3 H 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 10 #