data_3V3Z # _model_server_result.job_id wGUmSkmw5M4Zyg2jM-_f-Q _model_server_result.datetime_utc '2024-11-05 05:34:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3v3z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":600}' # _entry.id 3V3Z # _exptl.entry_id 3V3Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 594.993 _entity.id 13 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SPEROIDENONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3V3Z _cell.length_a 140.13 _cell.length_b 140.13 _cell.length_c 186.03 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3V3Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 13 _struct_asym.id V _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 J K K . H K 1 1_555 A O MET 125 H MET 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.034 ? metalc ? metalc2 J K K . H K 1 1_555 A O ALA 128 H ALA 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? metalc ? metalc3 J K K . H K 1 1_555 A O PHE 131 H PHE 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.935 ? metalc ? metalc4 B NE2 HIS 190 L HIS 190 1_555 T FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc5 B NE2 HIS 230 L HIS 230 1_555 T FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc6 C NE2 HIS 219 M HIS 219 1_555 T FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc7 C OE2 GLU 234 M GLU 234 1_555 T FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? metalc ? metalc8 C OE1 GLU 234 M GLU 234 1_555 T FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc9 C NE2 HIS 266 M HIS 266 1_555 T FE FE . M FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? # _chem_comp.formula 'C41 H70 O2' _chem_comp.formula_weight 594.993 _chem_comp.id SPN _chem_comp.mon_nstd_flag . _chem_comp.name SPEROIDENONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CMA O1 SPN sing 673 n n CMA HMA1 SPN sing 674 n n CMA HMA2 SPN sing 675 n n CMA HMA3 SPN sing 676 n n O1 C1 SPN sing 677 n n CM1 C1 SPN sing 678 n n CM1 HM11 SPN sing 679 n n CM1 HM12 SPN sing 680 n n CM1 HM13 SPN sing 681 n n CM2 C1 SPN sing 682 n n CM2 HM21 SPN sing 683 n n CM2 HM22 SPN sing 684 n n CM2 HM23 SPN sing 685 n n C1 C2 SPN sing 686 n n C2 O2 SPN doub 687 n n C2 C3 SPN sing 688 n n C3 C4 SPN sing 689 n n C3 H31 SPN sing 690 n n C3 H32 SPN sing 691 n n C4 C5 SPN doub 692 e n C4 H4 SPN sing 693 n n C5 CM3 SPN sing 694 n n C5 C6 SPN sing 695 n n CM3 HM31 SPN sing 696 n n CM3 HM32 SPN sing 697 n n CM3 HM33 SPN sing 698 n n C6 C7 SPN sing 699 n n C6 H61 SPN sing 700 n n C6 H62 SPN sing 701 n n C7 C8 SPN sing 702 n n C7 H71 SPN sing 703 n n C7 H72 SPN sing 704 n n C8 C9 SPN doub 705 e n C8 H8 SPN sing 706 n n C9 CM4 SPN sing 707 n n C9 C10 SPN sing 708 n n CM4 HM41 SPN sing 709 n n CM4 HM42 SPN sing 710 n n CM4 HM43 SPN sing 711 n n C10 C11 SPN sing 712 n n C10 H101 SPN sing 713 n n C10 H102 SPN sing 714 n n C11 C12 SPN sing 715 n n C11 H111 SPN sing 716 n n C11 H112 SPN sing 717 n n C12 C13 SPN doub 718 e n C12 H12 SPN sing 719 n n C13 CM5 SPN sing 720 n n C13 C14 SPN sing 721 n n CM5 HM51 SPN sing 722 n n CM5 HM52 SPN sing 723 n n CM5 HM53 SPN sing 724 n n C14 C15 SPN sing 725 n n C14 H141 SPN sing 726 n n C14 H142 SPN sing 727 n n C15 C16 SPN sing 728 n n C15 H151 SPN sing 729 n n C15 H152 SPN sing 730 n n C16 C17 SPN sing 731 n n C16 H161 SPN sing 732 n n C16 H162 SPN sing 733 n n C17 C18 SPN sing 734 n n C17 H171 SPN sing 735 n n C17 H172 SPN sing 736 n n C18 CM6 SPN sing 737 n n C18 C19 SPN doub 738 e n CM6 HM61 SPN sing 739 n n CM6 HM62 SPN sing 740 n n CM6 HM63 SPN sing 741 n n C19 C20 SPN sing 742 n n C19 H19 SPN sing 743 n n C20 C21 SPN sing 744 n n C20 H201 SPN sing 745 n n C20 H202 SPN sing 746 n n C21 C22 SPN sing 747 n n C21 H211 SPN sing 748 n n C21 H212 SPN sing 749 n n C22 CM7 SPN sing 750 n n C22 C23 SPN sing 751 n n C22 H22 SPN sing 752 n n CM7 HM71 SPN sing 753 n n CM7 HM72 SPN sing 754 n n CM7 HM73 SPN sing 755 n n C23 C24 SPN sing 756 n n C23 H231 SPN sing 757 n n C23 H232 SPN sing 758 n n C24 C25 SPN sing 759 n n C24 H241 SPN sing 760 n n C24 H242 SPN sing 761 n n C25 C26 SPN doub 762 e n C25 H25 SPN sing 763 n n C26 CM8 SPN sing 764 n n C26 C27 SPN sing 765 n n CM8 HM81 SPN sing 766 n n CM8 HM82 SPN sing 767 n n CM8 HM83 SPN sing 768 n n C27 C28 SPN sing 769 n n C27 H271 SPN sing 770 n n C27 H272 SPN sing 771 n n C28 C29 SPN sing 772 n n C28 H281 SPN sing 773 n n C28 H282 SPN sing 774 n n C29 C30 SPN doub 775 n n C29 H29 SPN sing 776 n n C30 CM9 SPN sing 777 n n C30 CMB SPN sing 778 n n CM9 HM91 SPN sing 779 n n CM9 HM92 SPN sing 780 n n CM9 HM93 SPN sing 781 n n CMB HMB1 SPN sing 782 n n CMB HMB2 SPN sing 783 n n CMB HMB3 SPN sing 784 n n # _atom_sites.entry_id 3V3Z _atom_sites.fract_transf_matrix[1][1] 0.007136 _atom_sites.fract_transf_matrix[1][2] 0.00412 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00824 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005375 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 LDA H 1 704 704 LDA LDA . E 5 PO4 H 1 803 803 PO4 PO4 . F 5 PO4 H 1 804 804 PO4 PO4 . G 6 HTO H 1 2 2 HTO HTO . H 6 HTO H 1 3 3 HTO HTO . I 7 DIO H 1 251 41 DIO DIO . J 8 K H 1 1 1 K K . K 9 BCL L 1 301 301 BCL BCL . L 9 BCL L 1 302 302 BCL BCL . M 9 BCL L 1 304 304 BCL BCL . N 10 BPH L 1 402 402 BPH BPH . O 11 U10 L 1 502 502 U10 U10 . P 6 HTO L 1 282 1 HTO HTO . Q 7 DIO L 1 283 40 DIO DIO . R 9 BCL M 1 303 303 BCL BCL . S 10 BPH M 1 401 401 BPH BPH . T 12 FE M 1 500 500 FE FE . U 11 U10 M 1 501 501 U10 U10 . V 13 SPN M 1 600 600 SPN SPN . W 4 LDA M 1 701 701 LDA LDA . X 4 LDA M 1 702 702 LDA LDA . Y 4 LDA M 1 703 703 LDA LDA . Z 4 LDA M 1 705 705 LDA LDA . AA 5 PO4 M 1 800 800 PO4 PO4 . BA 5 PO4 M 1 801 801 PO4 PO4 . CA 5 PO4 M 1 802 802 PO4 PO4 . DA 14 CL M 1 304 1 CL CL . EA 15 HOH H 1 6 6 HOH HOH . EA 15 HOH H 2 252 19 HOH HOH . EA 15 HOH H 3 253 29 HOH HOH . EA 15 HOH H 4 254 30 HOH HOH . EA 15 HOH H 5 255 32 HOH HOH . EA 15 HOH H 6 256 33 HOH HOH . EA 15 HOH H 7 257 34 HOH HOH . EA 15 HOH H 8 258 35 HOH HOH . EA 15 HOH H 9 259 36 HOH HOH . EA 15 HOH H 10 260 38 HOH HOH . EA 15 HOH H 11 261 41 HOH HOH . EA 15 HOH H 12 262 43 HOH HOH . EA 15 HOH H 13 263 46 HOH HOH . FA 15 HOH L 1 284 1 HOH HOH . FA 15 HOH L 2 285 2 HOH HOH . FA 15 HOH L 3 286 3 HOH HOH . FA 15 HOH L 4 287 4 HOH HOH . FA 15 HOH L 5 288 5 HOH HOH . FA 15 HOH L 6 289 8 HOH HOH . FA 15 HOH L 7 290 9 HOH HOH . FA 15 HOH L 8 291 11 HOH HOH . FA 15 HOH L 9 292 15 HOH HOH . FA 15 HOH L 10 293 16 HOH HOH . FA 15 HOH L 11 294 31 HOH HOH . FA 15 HOH L 12 295 37 HOH HOH . FA 15 HOH L 13 296 39 HOH HOH . FA 15 HOH L 14 297 40 HOH HOH . FA 15 HOH L 15 298 42 HOH HOH . FA 15 HOH L 16 299 45 HOH HOH . FA 15 HOH L 17 300 47 HOH HOH . FA 15 HOH L 18 303 49 HOH HOH . FA 15 HOH L 19 305 50 HOH HOH . GA 15 HOH M 1 305 7 HOH HOH . GA 15 HOH M 2 306 10 HOH HOH . GA 15 HOH M 3 307 12 HOH HOH . GA 15 HOH M 4 308 13 HOH HOH . GA 15 HOH M 5 309 14 HOH HOH . GA 15 HOH M 6 310 18 HOH HOH . GA 15 HOH M 7 311 20 HOH HOH . GA 15 HOH M 8 312 21 HOH HOH . GA 15 HOH M 9 313 22 HOH HOH . GA 15 HOH M 10 314 23 HOH HOH . GA 15 HOH M 11 315 24 HOH HOH . GA 15 HOH M 12 316 25 HOH HOH . GA 15 HOH M 13 317 26 HOH HOH . GA 15 HOH M 14 318 27 HOH HOH . GA 15 HOH M 15 319 28 HOH HOH . GA 15 HOH M 16 320 44 HOH HOH . GA 15 HOH M 17 321 48 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CMA SPN . . . V 13 -27.119 37.458 -24.714 1 86.7 ? CMA SPN 600 M 1 HETATM 2 O O1 SPN . . . V 13 -26.289 36.31 -24.494 1 86.72 ? O1 SPN 600 M 1 HETATM 3 C CM1 SPN . . . V 13 -24.202 35.235 -23.963 1 86.56 ? CM1 SPN 600 M 1 HETATM 4 C CM2 SPN . . . V 13 -24.567 37.593 -23.284 1 86.63 ? CM2 SPN 600 M 1 HETATM 5 C C1 SPN . . . V 13 -25.25 36.241 -23.498 1 86.76 ? C1 SPN 600 M 1 HETATM 6 C C2 SPN . . . V 13 -25.802 35.738 -22.179 1 86.89 ? C2 SPN 600 M 1 HETATM 7 O O2 SPN . . . V 13 -25.062 35.64 -21.209 1 87.55 ? O2 SPN 600 M 1 HETATM 8 C C3 SPN . . . V 13 -27.261 35.344 -22.048 1 86.89 ? C3 SPN 600 M 1 HETATM 9 C C4 SPN . . . V 13 -27.481 34.284 -20.98 1 86.06 ? C4 SPN 600 M 1 HETATM 10 C C5 SPN . . . V 13 -28.665 33.652 -20.828 1 84.65 ? C5 SPN 600 M 1 HETATM 11 C CM3 SPN . . . V 13 -29.814 33.985 -21.747 1 84.18 ? CM3 SPN 600 M 1 HETATM 12 C C6 SPN . . . V 13 -28.812 32.601 -19.735 1 82.36 ? C6 SPN 600 M 1 HETATM 13 C C7 SPN . . . V 13 -30.073 32.82 -18.899 1 79.58 ? C7 SPN 600 M 1 HETATM 14 C C8 SPN . . . V 13 -30.062 31.948 -17.656 1 77.59 ? C8 SPN 600 M 1 HETATM 15 C C9 SPN . . . V 13 -31.096 31.18 -17.235 1 75.35 ? C9 SPN 600 M 1 HETATM 16 C CM4 SPN . . . V 13 -32.395 31.108 -17.999 1 74.13 ? CM4 SPN 600 M 1 HETATM 17 C C10 SPN . . . V 13 -30.895 30.386 -15.959 1 73.13 ? C10 SPN 600 M 1 HETATM 18 C C11 SPN . . . V 13 -32.095 29.524 -15.564 1 70.65 ? C11 SPN 600 M 1 HETATM 19 C C12 SPN . . . V 13 -31.83 28.981 -14.18 1 68.51 ? C12 SPN 600 M 1 HETATM 20 C C13 SPN . . . V 13 -32.793 28.632 -13.317 1 67.32 ? C13 SPN 600 M 1 HETATM 21 C CM5 SPN . . . V 13 -34.24 28.756 -13.693 1 67.1 ? CM5 SPN 600 M 1 HETATM 22 C C14 SPN . . . V 13 -32.372 28.123 -11.954 1 66.42 ? C14 SPN 600 M 1 HETATM 23 C C15 SPN . . . V 13 -33.267 27.015 -11.41 1 66.08 ? C15 SPN 600 M 1 HETATM 24 C C16 SPN . . . V 13 -32.756 26.395 -10.111 1 65.82 ? C16 SPN 600 M 1 HETATM 25 C C17 SPN . . . V 13 -31.257 26.123 -10.111 1 66.25 ? C17 SPN 600 M 1 HETATM 26 C C18 SPN . . . V 13 -30.825 25.275 -8.934 1 67.52 ? C18 SPN 600 M 1 HETATM 27 C CM6 SPN . . . V 13 -31.843 24.654 -8.013 1 67.15 ? CM6 SPN 600 M 1 HETATM 28 C C19 SPN . . . V 13 -29.496 25.097 -8.757 1 68.38 ? C19 SPN 600 M 1 HETATM 29 C C20 SPN . . . V 13 -28.853 24.292 -7.645 1 68.33 ? C20 SPN 600 M 1 HETATM 30 C C21 SPN . . . V 13 -27.343 24.524 -7.661 1 68.24 ? C21 SPN 600 M 1 HETATM 31 C C22 SPN . . . V 13 -26.626 23.613 -6.675 1 69.05 ? C22 SPN 600 M 1 HETATM 32 C CM7 SPN . . . V 13 -26.913 23.977 -5.221 1 68.72 ? CM7 SPN 600 M 1 HETATM 33 C C23 SPN . . . V 13 -25.131 23.622 -6.956 1 71 ? C23 SPN 600 M 1 HETATM 34 C C24 SPN . . . V 13 -24.636 22.19 -7.092 1 73.3 ? C24 SPN 600 M 1 HETATM 35 C C25 SPN . . . V 13 -23.13 22.112 -7.253 1 76.04 ? C25 SPN 600 M 1 HETATM 36 C C26 SPN . . . V 13 -22.519 21.375 -8.213 1 77.95 ? C26 SPN 600 M 1 HETATM 37 C CM8 SPN . . . V 13 -23.306 20.568 -9.212 1 77.78 ? CM8 SPN 600 M 1 HETATM 38 C C27 SPN . . . V 13 -21.005 21.332 -8.285 1 79.48 ? C27 SPN 600 M 1 HETATM 39 C C28 SPN . . . V 13 -20.523 20.222 -7.346 1 81.12 ? C28 SPN 600 M 1 HETATM 40 C C29 SPN . . . V 13 -19.012 20.099 -7.258 1 83.46 ? C29 SPN 600 M 1 HETATM 41 C C30 SPN . . . V 13 -18.234 20.683 -6.309 1 85 ? C30 SPN 600 M 1 HETATM 42 C CM9 SPN . . . V 13 -18.786 21.572 -5.21 1 84.41 ? CM9 SPN 600 M 1 HETATM 43 C CMB SPN . . . V 13 -16.749 20.443 -6.368 1 84.83 ? CMB SPN 600 M 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #